Wall clock time and date at job start Thu Apr 9 2020 13:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.47211 * 109.47138 * 2 1 4 4 N 2.60803 * 109.46947 * 359.97438 * 2 1 3 5 5 N 1.46494 * 109.47535 * 120.00150 * 2 1 3 6 6 C 1.34783 * 119.99874 * 300.00242 * 5 2 1 7 7 O 1.21285 * 119.99910 * 359.97438 * 6 5 2 8 8 C 1.50697 * 119.99925 * 179.97438 * 6 5 2 9 9 N 1.46500 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.36942 * 120.00061 * 270.00389 * 9 8 6 11 11 H 1.08002 * 119.99575 * 192.55198 * 10 9 8 12 12 C 1.38804 * 119.99939 * 12.54836 * 10 9 8 13 13 N 1.31626 * 120.00165 * 25.36412 * 12 10 9 14 14 Si 1.86803 * 120.00177 * 205.35592 * 12 10 9 15 15 H 1.48501 * 109.46905 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46906 * 120.00183 * 14 12 10 17 17 H 1.48494 * 109.47215 * 240.00771 * 14 12 10 18 18 C 1.46499 * 119.99877 * 89.99732 * 9 8 6 19 19 C 1.53007 * 117.50098 * 194.08436 * 18 9 8 20 20 C 1.52998 * 60.00006 * 252.50990 * 19 18 9 21 21 C 1.52999 * 109.47463 * 240.00402 * 2 1 3 22 22 C 1.52991 * 117.50364 * 123.74216 * 21 2 1 23 23 C 1.53000 * 117.49948 * 55.08062 * 21 2 1 24 24 H 1.08999 * 109.46986 * 300.00102 * 1 2 3 25 25 H 1.08994 * 109.46944 * 59.99697 * 1 2 3 26 26 H 1.08995 * 109.46839 * 179.97438 * 1 2 3 27 27 H 0.97000 * 120.00669 * 119.99869 * 5 2 1 28 28 H 1.08997 * 109.47245 * 59.99884 * 8 6 5 29 29 H 1.08998 * 109.47094 * 299.99485 * 8 6 5 30 30 H 0.96989 * 119.99895 * 175.13151 * 13 12 10 31 31 H 1.08996 * 115.55512 * 339.79251 * 18 9 8 32 32 H 1.09004 * 117.49594 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.50115 * 145.02270 * 19 18 9 34 34 H 1.09000 * 117.50141 * 252.50550 * 20 19 18 35 35 H 1.09002 * 117.51725 * 107.47674 * 20 19 18 36 36 H 1.08997 * 115.55034 * 269.41798 * 21 2 1 37 37 H 1.09006 * 117.50346 * 0.02562 * 22 21 2 38 38 H 1.09004 * 117.50280 * 145.02076 * 22 21 2 39 39 H 1.08998 * 117.50343 * 214.98416 * 23 21 2 40 40 H 1.09004 * 117.49923 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3879 0.0000 4 7 2.3993 2.4589 -0.0011 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -0.2302 2.4203 7 8 0.9958 0.7562 2.5316 8 6 2.1948 -0.9409 3.6506 9 7 1.7070 -0.2499 4.8469 10 6 2.4478 0.7571 5.4058 11 1 2.1995 1.1281 6.3892 12 6 3.5178 1.3008 4.7085 13 7 3.5417 1.2475 3.3936 14 14 4.9238 2.1083 5.6362 15 1 4.6588 2.0379 7.0957 16 1 6.1916 1.3988 5.3289 17 1 5.0387 3.5295 5.2216 18 6 0.4267 -0.6362 5.4450 19 6 -0.1882 0.3151 6.4737 20 6 0.4244 -1.0111 6.9284 21 6 2.0401 -0.7211 -1.2493 22 6 2.9863 0.0487 -2.1726 23 6 1.5432 -0.2199 -2.6067 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 2.5761 -1.4792 1.1071 28 1 3.2847 -0.9413 3.6508 29 1 1.8310 -1.9684 3.6505 30 1 4.2528 1.6886 2.9032 31 1 -0.2550 -1.1767 4.7884 32 1 0.3598 1.2285 6.7050 33 1 -1.2746 0.4007 6.4937 34 1 -0.2589 -1.7980 7.2477 35 1 1.3757 -0.9707 7.4591 36 1 2.2062 -1.7927 -1.1386 37 1 3.2458 1.0690 -1.8900 38 1 3.7748 -0.5163 -2.6698 39 1 1.3829 -0.9615 -3.3892 40 1 0.8532 0.6240 -2.6098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573035432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:52 Heat of formation + Delta-G solvation = 67.025949 kcal Electronic energy + Delta-G solvation = -22404.987554 eV Core-core repulsion = 19222.568427 eV Total energy + Delta-G solvation = -3182.419127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95810 -39.25207 -38.15289 -36.62163 -35.29556 -34.85934 -32.48408 -31.32083 -28.29032 -26.14374 -25.20078 -23.26158 -22.95530 -22.68223 -21.71200 -20.97376 -18.84240 -18.00855 -17.75393 -17.47934 -16.73822 -16.09317 -15.81935 -15.64406 -15.14820 -14.93424 -14.66594 -14.18299 -14.04685 -13.74222 -13.70951 -13.37717 -13.22347 -13.01832 -12.75248 -12.71148 -12.40466 -12.28335 -12.18593 -12.10995 -12.04929 -11.80908 -11.65858 -11.33817 -11.09884 -10.96825 -10.41092 -10.10078 -9.83212 -8.63507 -7.89672 -5.13272 1.37422 1.42764 1.50910 1.71745 1.95045 2.42100 2.52885 2.74293 2.85200 3.14189 3.22405 3.49269 3.52105 3.67737 3.95024 4.10884 4.31117 4.31852 4.38581 4.46760 4.54714 4.66427 4.77035 4.85887 4.93299 4.95324 5.01935 5.03730 5.08279 5.17458 5.25227 5.29107 5.36169 5.38450 5.53793 5.70944 5.90245 6.25301 6.74725 7.02648 7.18679 7.84833 8.11743 8.26462 9.13831 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018513 B = 0.006475 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.116168 B = 4323.467666 C = 5299.847404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.305 3.695 3 C 0.233 3.767 4 N -0.492 5.492 5 N -0.723 5.723 6 C 0.532 3.468 7 O -0.559 6.559 8 C 0.165 3.835 9 N -0.554 5.554 10 C -0.249 4.249 11 H 0.069 0.931 12 C -0.044 4.044 13 N -0.898 5.898 14 Si 0.952 3.048 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.314 1.314 18 C 0.110 3.890 19 C -0.209 4.209 20 C -0.192 4.192 21 C -0.148 4.148 22 C -0.198 4.198 23 C -0.146 4.146 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.413 0.587 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.237 0.763 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -13.747 -9.780 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.214 3.786 3 C -0.085 4.085 4 N -0.170 5.170 5 N -0.381 5.381 6 C 0.319 3.681 7 O -0.434 6.434 8 C 0.035 3.965 9 N -0.270 5.270 10 C -0.379 4.379 11 H 0.087 0.913 12 C -0.241 4.241 13 N -0.543 5.543 14 Si 0.783 3.217 15 H -0.195 1.195 16 H -0.212 1.212 17 H -0.243 1.243 18 C 0.001 3.999 19 C -0.248 4.248 20 C -0.232 4.232 21 C -0.167 4.167 22 C -0.235 4.235 23 C -0.183 4.183 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.250 0.750 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.182 0.818 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.924 -11.409 -9.730 15.783 hybrid contribution 1.281 1.074 0.655 1.796 sum -3.643 -10.335 -9.075 14.228 Atomic orbital electron populations 1.22144 0.90942 1.05013 1.02715 1.17390 0.95016 0.78753 0.87454 1.30158 0.91740 0.95746 0.90892 1.81006 1.10637 1.15042 1.10275 1.46160 1.56129 1.32342 1.03457 1.22030 0.77226 0.84110 0.84713 1.90517 1.40044 1.26497 1.86386 1.20656 0.99481 0.93202 0.83153 1.43657 1.18260 1.37579 1.27498 1.19226 1.06273 1.13761 0.98654 0.91313 1.25272 1.01867 1.01090 0.95834 1.69937 1.32506 1.46992 1.04892 0.85434 0.81038 0.76429 0.78842 1.19522 1.21166 1.24309 1.21230 0.88449 1.00861 0.89350 1.23100 0.99460 0.94451 1.07822 1.23358 1.01697 0.97622 1.00545 1.22468 1.05414 1.00912 0.87940 1.23181 0.95538 1.00330 1.04420 1.23133 0.95437 1.03600 0.96157 0.93599 0.90366 0.87576 0.75003 0.90454 0.89521 0.95343 0.87173 0.91796 0.88293 0.86912 0.90901 0.81789 0.92471 0.85932 0.84419 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.14 71.98 0.59 -3.44 16 2 C 0.30 9.02 0.86 1.80 0.00 9.02 16 3 C 0.23 9.60 10.47 89.45 0.94 10.54 16 4 N -0.49 -23.84 18.32 20.01 0.37 -23.47 16 5 N -0.72 -22.96 5.08 -431.19 -2.19 -25.15 16 6 C 0.53 22.62 5.20 87.65 0.46 23.08 16 7 O -0.56 -29.50 13.07 -3.04 -0.04 -29.54 16 8 C 0.16 6.91 5.48 85.63 0.47 7.38 16 9 N -0.55 -26.31 2.38 -682.35 -1.62 -27.93 16 10 C -0.25 -13.52 8.90 84.03 0.75 -12.77 16 11 H 0.07 3.81 6.27 -2.91 -0.02 3.79 16 12 C -0.04 -2.48 4.83 84.86 0.41 -2.07 16 13 N -0.90 -51.50 8.86 21.65 0.19 -51.31 16 14 Si 0.95 46.87 29.63 68.60 2.03 48.90 16 15 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 17 H -0.31 -16.43 7.11 99.48 0.71 -15.73 16 18 C 0.11 4.39 6.60 44.99 0.30 4.69 16 19 C -0.21 -8.15 9.77 30.60 0.30 -7.85 16 20 C -0.19 -6.61 10.13 30.59 0.31 -6.30 16 21 C -0.15 -2.82 5.33 -10.80 -0.06 -2.88 16 22 C -0.20 -4.19 9.67 30.61 0.30 -3.90 16 23 C -0.15 -2.33 9.55 30.62 0.29 -2.04 16 24 H 0.04 1.66 6.17 -2.39 -0.01 1.65 16 25 H 0.08 1.80 7.00 -2.39 -0.02 1.79 16 26 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.41 9.85 8.40 -92.71 -0.78 9.07 16 28 H 0.08 3.55 6.61 -2.39 -0.02 3.54 16 29 H 0.09 2.82 8.07 -2.39 -0.02 2.80 16 30 H 0.24 14.13 8.32 -92.72 -0.77 13.36 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.06 2.90 6.44 -2.38 -0.02 2.88 16 33 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 34 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.16 1.90 8.04 -2.39 -0.02 1.88 16 37 H 0.06 1.70 6.34 -2.38 -0.02 1.68 16 38 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.58 7.30 -2.38 -0.02 1.56 16 Total: -1.00 -77.62 329.54 4.06 -73.55 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.28 Total: 21.49 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.04 Total: 13.46 kcal Atomic # 7 Polarization: -124.61 SS G_CDS: -3.26 Total: -127.86 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.04 Total: -29.54 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.62 4.06 -73.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573035432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.580 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds