Wall clock time and date at job start Thu Apr 9 2020 13:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 N 1.46499 * 109.47191 * 120.00500 * 2 1 3 5 5 C 1.46505 * 119.99603 * 304.65040 * 4 2 1 6 6 C 1.50700 * 109.47242 * 263.46049 * 5 4 2 7 7 H 1.07999 * 119.99803 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99927 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00098 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99725 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47387 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46833 * 120.00341 * 10 8 6 13 13 H 1.48496 * 109.47003 * 239.99971 * 10 8 6 14 14 C 1.34778 * 120.00036 * 124.65408 * 4 2 1 15 15 O 1.21564 * 120.00052 * 4.37839 * 14 4 2 16 16 C 1.47705 * 119.99652 * 184.37696 * 14 4 2 17 17 C 1.41501 * 126.51772 * 174.07689 * 16 14 4 18 18 C 1.35365 * 105.50453 * 179.97438 * 17 16 14 19 19 C 1.50702 * 126.38411 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.51758 * 146.28419 * 19 18 17 21 21 C 1.52999 * 117.49996 * 214.91305 * 19 18 17 22 22 N 1.35030 * 107.22885 * 0.26210 * 18 17 16 23 23 H 0.97001 * 124.88283 * 179.71404 * 22 18 17 24 24 N 1.28474 * 110.23012 * 359.54993 * 22 18 17 25 25 H 1.09005 * 109.47171 * 299.99882 * 1 2 3 26 26 H 1.09000 * 109.47473 * 59.99721 * 1 2 3 27 27 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46280 * 240.00305 * 2 1 3 29 29 H 1.08996 * 109.47288 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47129 * 300.00489 * 3 2 1 31 31 H 1.08997 * 109.47222 * 60.00196 * 3 2 1 32 32 H 1.08994 * 109.47255 * 23.46210 * 5 4 2 33 33 H 1.08994 * 109.46641 * 143.46124 * 5 4 2 34 34 H 0.97001 * 120.00342 * 179.97438 * 9 8 6 35 35 H 1.07997 * 127.24541 * 0.02562 * 17 16 14 36 36 H 1.08997 * 115.55157 * 0.59072 * 19 18 17 37 37 H 1.08993 * 117.50196 * 214.97378 * 20 19 18 38 38 H 1.09000 * 117.49717 * 359.97438 * 20 19 18 39 39 H 1.09002 * 117.49393 * 359.97438 * 21 19 18 40 40 H 1.08994 * 117.50113 * 144.97607 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5824 -0.2524 2.5243 6 6 2.6177 0.6704 3.1138 7 1 3.5109 0.9071 2.5547 8 6 2.4246 1.2125 4.3667 9 7 1.3367 0.9247 5.0471 10 14 3.7084 2.3559 5.0976 11 1 4.8307 2.5175 4.1387 12 1 3.0943 3.6803 5.3694 13 1 4.2209 1.7783 6.3659 14 6 2.8687 -1.7293 1.0746 15 8 3.2929 -2.0426 -0.0207 16 6 3.2853 -2.4867 2.2723 17 6 4.0717 -3.6628 2.2934 18 6 4.1942 -3.9928 3.6005 19 6 4.9440 -5.1754 4.1575 20 6 5.6334 -5.0011 5.5122 21 6 4.3684 -5.8545 5.4019 22 7 3.5140 -3.0683 4.3118 23 1 3.4310 -3.0627 5.2782 24 7 2.9955 -2.1953 3.5247 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.6322 0.2747 2.4392 33 1 1.4594 -1.1209 3.1712 34 1 1.2010 1.3058 5.9288 35 1 4.4874 -4.1865 1.4453 36 1 5.4362 -5.8097 3.4203 37 1 6.5791 -5.5206 5.6662 38 1 5.5452 -4.0307 6.0006 39 1 3.4476 -5.4455 5.8179 40 1 4.4815 -6.9355 5.4831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578391105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:55 Heat of formation + Delta-G solvation = 69.039871 kcal Electronic energy + Delta-G solvation = -22156.224712 eV Core-core repulsion = 18973.892915 eV Total energy + Delta-G solvation = -3182.331797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13517 -38.83937 -37.13832 -35.63208 -32.88207 -31.67835 -30.80935 -29.70037 -27.03923 -26.57132 -23.85378 -23.05380 -22.80955 -22.55060 -20.56950 -19.96876 -17.82897 -17.41883 -16.42561 -16.18065 -15.44074 -15.22075 -15.01559 -14.33912 -13.93881 -13.82145 -13.42040 -13.05839 -12.84725 -12.33695 -12.24577 -12.10878 -11.76691 -11.57327 -11.49113 -11.40449 -11.03665 -10.89839 -10.80065 -10.66625 -10.57161 -10.32848 -9.84345 -9.57449 -9.44604 -9.16939 -8.76359 -8.40501 -8.22984 -7.54707 -5.98746 -3.98657 2.30844 2.53189 3.26975 3.35697 3.36543 3.41778 3.85052 3.99550 4.26027 4.45230 4.50370 4.67851 4.83820 5.06611 5.27165 5.36106 5.44043 5.52545 5.65302 5.77435 5.78158 5.88829 5.91983 5.95939 6.12322 6.19029 6.26239 6.34181 6.46113 6.50052 6.78283 6.91168 6.97808 7.10052 7.41858 7.60754 7.87037 7.95271 8.32345 8.43486 8.59199 9.03121 9.15872 9.63054 11.09159 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.007344 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.980896 B = 3811.723741 C = 5308.068457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 C -0.153 4.153 4 N -0.579 5.579 5 C 0.227 3.773 6 C -0.500 4.500 7 H 0.053 0.947 8 C 0.067 3.933 9 N -0.893 5.893 10 Si 0.884 3.116 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.287 1.287 14 C 0.600 3.400 15 O -0.574 6.574 16 C -0.013 4.013 17 C -0.176 4.176 18 C 0.020 3.980 19 C -0.077 4.077 20 C -0.178 4.178 21 C -0.177 4.177 22 N -0.389 5.389 23 H 0.437 0.563 24 N -0.177 5.177 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.258 0.742 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -9.861 -0.401 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 C -0.211 4.211 4 N -0.308 5.308 5 C 0.107 3.893 6 C -0.539 4.539 7 H 0.072 0.928 8 C -0.134 4.134 9 N -0.533 5.533 10 Si 0.712 3.288 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.214 1.214 14 C 0.387 3.613 15 O -0.455 6.455 16 C -0.174 4.174 17 C -0.205 4.205 18 C -0.104 4.104 19 C -0.097 4.097 20 C -0.215 4.215 21 C -0.215 4.215 22 N -0.103 5.103 23 H 0.281 0.719 24 N -0.012 5.012 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.558 -9.163 -0.205 9.516 hybrid contribution 1.156 0.259 0.784 1.421 sum 3.714 -8.904 0.579 9.665 Atomic orbital electron populations 1.22133 0.95605 1.01713 1.02194 1.20878 0.93501 0.93483 0.88927 1.22074 1.01352 0.95847 1.01836 1.48229 1.43819 1.29390 1.09407 1.19821 0.95485 0.97112 0.76840 1.21358 1.05193 1.26352 1.01018 0.92827 1.24768 0.95295 0.96629 0.96744 1.69937 1.25972 1.44775 1.12638 0.86668 0.82148 0.80896 0.79040 1.19980 1.21148 1.21368 1.16938 0.78670 0.79781 0.85935 1.90654 1.57711 1.70338 1.26755 1.21887 1.05291 0.98333 0.91852 1.21287 1.05003 0.98778 0.95399 1.20351 1.02792 0.95304 0.91935 1.20432 1.01901 0.96017 0.91365 1.23073 0.97086 1.01931 0.99421 1.23068 0.97715 0.99544 1.01138 1.43696 1.37992 1.18494 1.10153 0.71937 1.74631 1.15037 1.10454 1.01064 0.91450 0.92309 0.92969 0.89618 0.92879 0.93232 0.90704 0.94851 0.91413 0.93243 0.82871 0.85467 0.87971 0.88732 0.88772 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.10 37.16 0.34 -2.32 16 2 C 0.14 2.65 3.24 -67.93 -0.22 2.43 16 3 C -0.15 -2.85 8.92 37.16 0.33 -2.52 16 4 N -0.58 -13.04 2.38 -168.63 -0.40 -13.45 16 5 C 0.23 5.60 4.12 -5.19 -0.02 5.58 16 6 C -0.50 -13.28 7.51 -34.44 -0.26 -13.54 16 7 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 10 Si 0.88 21.25 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.60 13.95 7.62 -12.39 -0.09 13.86 16 15 O -0.57 -13.93 16.28 5.31 0.09 -13.85 16 16 C -0.01 -0.28 6.81 -82.77 -0.56 -0.84 16 17 C -0.18 -3.19 10.73 -39.36 -0.42 -3.61 16 18 C 0.02 0.31 6.64 -82.21 -0.55 -0.23 16 19 C -0.08 -0.86 6.26 -91.77 -0.57 -1.43 16 20 C -0.18 -1.68 10.22 -26.73 -0.27 -1.95 16 21 C -0.18 -1.61 10.22 -26.73 -0.27 -1.89 16 22 N -0.39 -6.64 6.80 33.50 0.23 -6.41 16 23 H 0.44 6.26 8.96 -190.44 -1.71 4.56 16 24 N -0.18 -3.81 8.08 33.42 0.27 -3.54 16 25 H 0.07 1.21 6.50 -51.93 -0.34 0.87 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.68 6.93 -51.93 -0.36 1.32 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.53 7.28 -51.93 -0.38 1.15 16 32 H 0.03 0.86 6.20 -51.93 -0.32 0.53 16 33 H 0.07 1.77 5.33 -51.93 -0.28 1.49 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -31.16 333.19 -8.91 -40.07 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.15 Total: 4.73 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.68 Total: -4.78 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.83 Total: -47.41 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.16 -8.91 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578391105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.106 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds