Wall clock time and date at job start Thu Apr 9 2020 13:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 N 1.46499 * 109.47191 * 120.00500 * 2 1 3 5 5 C 1.46505 * 119.99603 * 304.65040 * 4 2 1 6 6 C 1.50700 * 109.47242 * 263.46049 * 5 4 2 7 7 H 1.07999 * 119.99803 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99927 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00098 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99725 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47387 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46833 * 120.00341 * 10 8 6 13 13 H 1.48496 * 109.47003 * 239.99971 * 10 8 6 14 14 C 1.34778 * 120.00036 * 124.65408 * 4 2 1 15 15 O 1.21564 * 120.00052 * 4.37839 * 14 4 2 16 16 C 1.47705 * 119.99652 * 184.37696 * 14 4 2 17 17 C 1.41501 * 126.51772 * 174.07689 * 16 14 4 18 18 C 1.35365 * 105.50453 * 179.97438 * 17 16 14 19 19 C 1.50702 * 126.38411 * 179.97438 * 18 17 16 20 20 C 1.53001 * 117.51758 * 146.28419 * 19 18 17 21 21 C 1.52999 * 117.49996 * 214.91305 * 19 18 17 22 22 N 1.35030 * 107.22885 * 0.26210 * 18 17 16 23 23 H 0.97001 * 124.88283 * 179.71404 * 22 18 17 24 24 N 1.28474 * 110.23012 * 359.54993 * 22 18 17 25 25 H 1.09005 * 109.47171 * 299.99882 * 1 2 3 26 26 H 1.09000 * 109.47473 * 59.99721 * 1 2 3 27 27 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46280 * 240.00305 * 2 1 3 29 29 H 1.08996 * 109.47288 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47129 * 300.00489 * 3 2 1 31 31 H 1.08997 * 109.47222 * 60.00196 * 3 2 1 32 32 H 1.08994 * 109.47255 * 23.46210 * 5 4 2 33 33 H 1.08994 * 109.46641 * 143.46124 * 5 4 2 34 34 H 0.97001 * 120.00342 * 179.97438 * 9 8 6 35 35 H 1.07997 * 127.24541 * 0.02562 * 17 16 14 36 36 H 1.08997 * 115.55157 * 0.59072 * 19 18 17 37 37 H 1.08993 * 117.50196 * 214.97378 * 20 19 18 38 38 H 1.09000 * 117.49717 * 359.97438 * 20 19 18 39 39 H 1.09002 * 117.49393 * 359.97438 * 21 19 18 40 40 H 1.08994 * 117.50113 * 144.97607 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5824 -0.2524 2.5243 6 6 2.6177 0.6704 3.1138 7 1 3.5109 0.9071 2.5547 8 6 2.4246 1.2125 4.3667 9 7 1.3367 0.9247 5.0471 10 14 3.7084 2.3559 5.0976 11 1 4.8307 2.5175 4.1387 12 1 3.0943 3.6803 5.3694 13 1 4.2209 1.7783 6.3659 14 6 2.8687 -1.7293 1.0746 15 8 3.2929 -2.0426 -0.0207 16 6 3.2853 -2.4867 2.2723 17 6 4.0717 -3.6628 2.2934 18 6 4.1942 -3.9928 3.6005 19 6 4.9440 -5.1754 4.1575 20 6 5.6334 -5.0011 5.5122 21 6 4.3684 -5.8545 5.4019 22 7 3.5140 -3.0683 4.3118 23 1 3.4310 -3.0627 5.2782 24 7 2.9955 -2.1953 3.5247 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 0.6322 0.2747 2.4392 33 1 1.4594 -1.1209 3.1712 34 1 1.2010 1.3058 5.9288 35 1 4.4874 -4.1865 1.4453 36 1 5.4362 -5.8097 3.4203 37 1 6.5791 -5.5206 5.6662 38 1 5.5452 -4.0307 6.0006 39 1 3.4476 -5.4455 5.8179 40 1 4.4815 -6.9355 5.4831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578391105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:53:55 Heat of formation + Delta-G solvation = 50.659838 kcal Electronic energy + Delta-G solvation = -22157.021730 eV Core-core repulsion = 18973.892915 eV Total energy + Delta-G solvation = -3183.128815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.57003 -40.57830 -38.01431 -37.39370 -34.82615 -33.38748 -32.28614 -31.12099 -29.04167 -28.03630 -25.46454 -24.77250 -24.18658 -23.25849 -21.92393 -21.46310 -19.53339 -18.77811 -18.45166 -17.63690 -17.00916 -16.59721 -16.36037 -16.22125 -15.54334 -15.09294 -14.90955 -14.62225 -14.26430 -14.20792 -13.88402 -13.35410 -13.25176 -13.08427 -12.92742 -12.75145 -12.62359 -12.44769 -12.25987 -12.15411 -11.95645 -11.60691 -11.44256 -11.40108 -11.19053 -10.93674 -10.41751 -10.25579 -9.60109 -9.37420 -8.06373 -6.11851 0.77747 1.14259 1.34608 1.38892 1.48566 2.00107 2.35594 2.49745 2.56690 3.04333 3.25141 3.46829 3.64690 3.83710 4.00956 4.07925 4.21064 4.27974 4.35214 4.44189 4.71693 4.72070 4.76180 4.82542 4.88265 4.96301 4.99740 5.01316 5.19077 5.20405 5.20970 5.28739 5.43586 5.49207 5.56382 5.84025 5.96849 6.24484 6.29935 6.59494 6.89463 7.11833 7.37664 7.53361 9.00715 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.007344 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.980896 B = 3811.723741 C = 5308.068457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 C -0.143 4.143 4 N -0.582 5.582 5 C 0.245 3.755 6 C -0.499 4.499 7 H 0.033 0.967 8 C 0.031 3.969 9 N -0.915 5.915 10 Si 0.937 3.063 11 H -0.282 1.282 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.589 3.411 15 O -0.593 6.593 16 C -0.042 4.042 17 C -0.198 4.198 18 C 0.051 3.949 19 C -0.098 4.098 20 C -0.169 4.169 21 C -0.162 4.162 22 N -0.382 5.382 23 H 0.448 0.552 24 N -0.219 5.219 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.261 0.739 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 -10.877 0.272 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.201 4.201 4 N -0.311 5.311 5 C 0.125 3.875 6 C -0.538 4.538 7 H 0.051 0.949 8 C -0.168 4.168 9 N -0.556 5.556 10 Si 0.764 3.236 11 H -0.207 1.207 12 H -0.204 1.204 13 H -0.207 1.207 14 C 0.377 3.623 15 O -0.475 6.475 16 C -0.202 4.202 17 C -0.226 4.226 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.206 4.206 21 C -0.200 4.200 22 N -0.097 5.097 23 H 0.293 0.707 24 N -0.054 5.054 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.310 -10.166 0.473 10.701 hybrid contribution 0.948 0.504 0.594 1.227 sum 4.257 -9.662 1.067 10.612 Atomic orbital electron populations 1.22051 0.93350 1.02032 1.03153 1.21179 0.95359 0.93543 0.87731 1.21983 1.00041 0.95486 1.02607 1.48294 1.43723 1.29535 1.09592 1.19444 0.94340 0.96062 0.77694 1.21313 1.04674 1.26689 1.01116 0.94912 1.25298 0.96792 0.97773 0.96985 1.70012 1.27079 1.45572 1.12950 0.85840 0.79931 0.79554 0.78225 1.20745 1.20446 1.20653 1.17304 0.78529 0.79956 0.86470 1.90612 1.58449 1.70948 1.27504 1.21934 1.06923 0.99769 0.91553 1.21506 1.05657 0.98316 0.97109 1.20894 1.00462 0.95118 0.90926 1.20637 1.03168 0.95104 0.92837 1.23176 0.98388 1.01952 0.97118 1.23182 0.97390 1.00917 0.98471 1.43689 1.37387 1.18065 1.10541 0.70681 1.74485 1.16936 1.12517 1.01488 0.92942 0.88756 0.92989 0.89658 0.94768 0.89381 0.92865 0.96106 0.92555 0.93004 0.81707 0.83455 0.85650 0.89610 0.89247 0.85482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 9.10 71.98 0.65 -4.23 16 2 C 0.12 4.89 3.24 44.99 0.15 5.03 16 3 C -0.14 -5.34 8.92 71.98 0.64 -4.70 16 4 N -0.58 -27.06 2.38 -805.69 -1.91 -28.97 16 5 C 0.25 12.49 4.12 85.63 0.35 12.84 16 6 C -0.50 -27.17 7.51 25.60 0.19 -26.98 16 7 H 0.03 1.89 7.81 -2.91 -0.02 1.87 16 8 C 0.03 1.66 5.46 84.66 0.46 2.12 16 9 N -0.92 -51.08 13.29 21.44 0.28 -50.80 16 10 Si 0.94 43.79 29.54 68.60 2.03 45.82 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.59 28.32 7.62 86.74 0.66 28.98 16 15 O -0.59 -29.52 16.28 -3.92 -0.06 -29.59 16 16 C -0.04 -1.87 6.81 42.46 0.29 -1.58 16 17 C -0.20 -7.16 10.73 22.41 0.24 -6.92 16 18 C 0.05 1.53 6.64 41.40 0.28 1.80 16 19 C -0.10 -1.90 6.26 -11.54 -0.07 -1.97 16 20 C -0.17 -2.64 10.22 30.59 0.31 -2.33 16 21 C -0.16 -2.41 10.22 30.59 0.31 -2.10 16 22 N -0.38 -12.95 6.80 -47.93 -0.33 -13.27 16 23 H 0.45 12.61 8.96 -219.99 -1.97 10.64 16 24 N -0.22 -9.64 8.08 -48.18 -0.39 -10.03 16 25 H 0.05 1.88 6.50 -2.38 -0.02 1.87 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 3.36 6.93 -2.39 -0.02 3.34 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.05 2.20 7.28 -2.39 -0.02 2.18 16 32 H 0.02 1.11 6.20 -2.39 -0.01 1.10 16 33 H 0.06 3.05 5.33 -2.39 -0.01 3.04 16 34 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 36 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.41 333.19 3.17 -65.25 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.92 Total: 21.62 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.47 Total: -0.03 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -2.34 Total: -103.07 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.59 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.41 3.17 -65.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578391105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.906 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds