Wall clock time and date at job start Thu Apr 9 2020 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47271 * 2 1 4 4 H 1.09003 * 109.46946 * 173.93890 * 3 2 1 5 5 C 1.52995 * 109.47598 * 53.93434 * 3 2 1 6 6 C 1.53000 * 109.47165 * 64.99892 * 5 3 2 7 7 F 1.39895 * 109.47222 * 174.99994 * 6 5 3 8 8 F 1.39903 * 109.47082 * 295.00532 * 6 5 3 9 9 C 1.53007 * 109.47041 * 293.93141 * 3 2 1 10 10 N 1.46892 * 109.47141 * 297.20836 * 9 3 2 11 11 C 1.48563 * 111.00066 * 290.12050 * 10 9 3 12 12 C 1.54381 * 104.59664 * 200.96049 * 11 10 9 13 13 C 1.54261 * 105.06056 * 23.85446 * 12 11 10 14 14 O 1.42899 * 110.32426 * 118.99520 * 13 12 11 15 15 C 1.50697 * 110.32366 * 241.10358 * 13 12 11 16 16 H 1.08001 * 120.00329 * 117.17051 * 15 13 12 17 17 C 1.37879 * 119.99616 * 297.17073 * 15 13 12 18 18 N 1.31514 * 120.00626 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99773 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46830 * 60.00209 * 19 17 15 21 21 H 1.48501 * 109.47003 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47282 * 300.00103 * 19 17 15 23 23 C 1.48823 * 110.97383 * 174.70248 * 10 9 3 24 24 H 1.09001 * 109.47196 * 182.84711 * 1 2 3 25 25 H 1.09002 * 109.46711 * 302.83891 * 1 2 3 26 26 H 1.08998 * 109.47282 * 62.83764 * 1 2 3 27 27 H 1.08996 * 109.47040 * 239.99663 * 2 1 3 28 28 H 1.09007 * 109.46869 * 119.99709 * 2 1 3 29 29 H 1.08996 * 109.47365 * 185.00524 * 5 3 2 30 30 H 1.08998 * 109.46924 * 305.00396 * 5 3 2 31 31 H 1.09008 * 109.46841 * 55.00339 * 6 5 3 32 32 H 1.08997 * 109.47131 * 177.20258 * 9 3 2 33 33 H 1.09002 * 109.46734 * 57.20474 * 9 3 2 34 34 H 1.08998 * 110.41114 * 82.18409 * 11 10 9 35 35 H 1.09002 * 110.41151 * 319.74257 * 11 10 9 36 36 H 1.08994 * 110.32785 * 264.95301 * 12 11 10 37 37 H 1.09006 * 110.40893 * 142.79141 * 12 11 10 38 38 H 0.96698 * 114.00118 * 62.82972 * 14 13 12 39 39 H 0.96991 * 120.00364 * 180.02562 * 18 17 15 40 40 H 1.09003 * 110.45252 * 40.32316 * 23 10 9 41 41 H 1.08999 * 110.49910 * 277.79927 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1246 1.4443 0.1085 5 6 1.4095 2.2064 1.1660 6 6 1.8912 1.6068 2.4886 7 9 1.4064 2.3748 3.5527 8 9 1.4178 0.2956 2.6060 9 6 1.6583 2.1183 -1.3186 10 7 2.3178 1.4250 -2.4331 11 6 3.7836 1.6665 -2.4176 12 6 4.2423 1.3685 -3.8613 13 6 2.9844 1.5702 -4.7311 14 8 3.2025 2.6114 -5.6853 15 6 2.6214 0.2866 -5.4321 16 1 1.6779 -0.1952 -5.2223 17 6 3.4940 -0.2728 -6.3414 18 7 4.6427 0.3140 -6.5974 19 14 3.0444 -1.8644 -7.2098 20 1 1.7938 -1.6684 -7.9864 21 1 4.1426 -2.2531 -8.1308 22 1 2.8390 -2.9367 -6.2032 23 6 1.8703 1.9744 -3.7418 24 1 -0.3634 -1.0264 0.0510 25 1 -0.3633 0.5573 0.8635 26 1 -0.3634 0.4691 -0.9143 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7025 3.2550 1.1142 30 1 0.3239 2.1293 1.1061 31 1 2.9810 1.6030 2.5102 32 1 1.9779 3.1602 -1.2986 33 1 0.5773 2.0723 -1.4508 34 1 4.2728 0.9905 -1.7162 35 1 3.9954 2.7037 -2.1578 36 1 4.5972 0.3411 -3.9414 37 1 5.0261 2.0637 -4.1622 38 1 3.9073 2.4221 -6.3198 39 1 5.2563 -0.0793 -7.2373 40 1 1.7836 3.0597 -3.6896 41 1 0.9199 1.5301 -4.0373 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595557201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:14 Heat of formation + Delta-G solvation = -180.327329 kcal Electronic energy + Delta-G solvation = -22953.322346 eV Core-core repulsion = 19309.487989 eV Total energy + Delta-G solvation = -3643.834357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.85779 -47.87305 -40.29040 -38.16291 -35.95671 -34.11936 -31.53843 -31.50990 -29.76263 -28.09445 -26.21094 -24.95725 -23.93736 -22.06320 -21.27770 -20.01923 -19.02842 -18.50149 -18.07859 -17.23416 -16.91615 -16.66214 -16.30915 -16.03975 -15.61413 -15.37648 -14.84620 -14.62093 -14.28691 -14.09524 -13.92692 -13.83130 -13.64142 -13.26573 -13.15933 -12.98938 -12.81709 -12.75487 -12.59674 -12.34176 -12.24874 -12.05558 -11.89372 -11.71710 -11.41260 -11.32538 -11.12428 -10.86729 -10.57472 -10.09916 -9.25921 -8.17645 -6.29799 1.42966 1.43252 1.51047 2.41895 2.82819 3.06486 3.22332 3.46944 3.70290 3.73135 3.94121 4.02414 4.13947 4.26955 4.33961 4.38447 4.45114 4.58100 4.58926 4.67339 4.72131 4.77288 4.80320 4.89502 4.92170 5.07821 5.12628 5.22710 5.27942 5.39902 5.42618 5.53918 5.65952 5.68970 5.80583 6.02576 6.20811 6.32959 6.74802 7.38748 7.47401 8.88124 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.004244 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.241598 B = 6595.273930 C = 7043.589349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.071 4.071 4 H 0.081 0.919 5 C -0.164 4.164 6 C 0.259 3.741 7 F -0.220 7.220 8 F -0.212 7.212 9 C 0.049 3.951 10 N -0.500 5.500 11 C 0.043 3.957 12 C -0.114 4.114 13 C 0.230 3.770 14 O -0.604 6.604 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.027 3.973 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.274 1.274 23 C 0.062 3.938 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.377 0.623 39 H 0.267 0.733 40 H 0.033 0.967 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 3.067 16.269 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.090 4.090 4 H 0.099 0.901 5 C -0.202 4.202 6 C 0.206 3.794 7 F -0.202 7.202 8 F -0.193 7.193 9 C -0.079 4.079 10 N -0.225 5.225 11 C -0.085 4.085 12 C -0.153 4.153 13 C 0.191 3.809 14 O -0.413 6.413 15 C -0.579 4.579 16 H 0.068 0.932 17 C -0.172 4.172 18 N -0.557 5.557 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.200 1.200 23 C -0.066 4.066 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.227 0.773 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.869 2.754 16.588 17.254 hybrid contribution 0.486 -0.338 -1.217 1.353 sum -3.384 2.416 15.371 15.923 Atomic orbital electron populations 1.21782 0.96091 1.01258 1.01110 1.21633 0.96273 0.95914 1.02282 1.20967 1.00619 0.95278 0.92155 0.90075 1.22723 1.03837 1.01961 0.91708 1.22220 0.99288 0.73208 0.84670 1.92953 1.90923 1.75995 1.60316 1.92922 1.91085 1.38977 1.96331 1.22363 0.99734 0.95177 0.90632 1.65325 1.03947 1.52209 1.01013 1.23063 0.89274 0.99009 0.97140 1.22628 0.98187 0.99892 0.94551 1.19546 0.90633 0.84969 0.85771 1.86067 1.60838 1.46500 1.47903 1.21839 1.03794 1.08309 1.23937 0.93151 1.25631 0.94555 1.00158 0.96902 1.69725 1.09454 1.41208 1.35338 0.85667 0.77754 0.80134 0.78358 1.20125 1.20668 1.19975 1.22828 0.98171 0.96018 0.89616 0.93433 0.92082 0.93557 0.92668 0.90673 0.87358 0.89005 0.84723 0.94256 0.90538 0.89749 0.93789 0.93644 0.94238 0.77307 0.92324 0.94882 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.93 71.98 0.64 -2.72 16 2 C -0.12 -2.98 5.02 30.59 0.15 -2.83 16 3 C -0.07 -1.50 2.16 -10.79 -0.02 -1.52 16 4 H 0.08 1.62 7.14 -2.39 -0.02 1.60 16 5 C -0.16 -2.63 4.68 30.59 0.14 -2.49 16 6 C 0.26 4.14 5.25 71.98 0.38 4.52 16 7 F -0.22 -4.24 17.34 44.97 0.78 -3.46 16 8 F -0.21 -4.33 13.56 44.97 0.61 -3.72 16 9 C 0.05 1.30 4.06 86.31 0.35 1.65 16 10 N -0.50 -17.77 4.63 -880.75 -4.08 -21.85 16 11 C 0.04 1.52 5.74 86.45 0.50 2.02 16 12 C -0.11 -5.21 5.60 31.49 0.18 -5.04 16 13 C 0.23 11.47 1.05 -10.64 -0.01 11.46 16 14 O -0.60 -31.94 12.94 -148.98 -1.93 -33.87 16 15 C -0.54 -29.44 8.08 25.60 0.21 -29.23 16 16 H 0.05 2.78 7.54 -2.91 -0.02 2.76 16 17 C 0.03 1.44 5.04 84.66 0.43 1.87 16 18 N -0.92 -49.56 10.82 21.45 0.23 -49.33 16 19 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 23 C 0.06 2.61 5.78 86.40 0.50 3.11 16 24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.25 5.57 -2.39 -0.01 1.23 16 26 H 0.05 1.15 6.67 -2.39 -0.02 1.14 16 27 H 0.05 1.67 7.52 -2.39 -0.02 1.65 16 28 H 0.07 1.70 5.86 -2.38 -0.01 1.68 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.54 5.98 -2.39 -0.01 1.52 16 31 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.04 0.98 7.88 -2.39 -0.02 0.96 16 33 H 0.08 2.00 6.53 -2.39 -0.02 1.98 16 34 H 0.08 2.69 7.69 -2.39 -0.02 2.67 16 35 H 0.04 1.43 7.82 -2.39 -0.02 1.41 16 36 H 0.04 2.30 7.33 -2.39 -0.02 2.28 16 37 H 0.04 1.84 7.98 -2.38 -0.02 1.82 16 38 H 0.38 20.41 7.19 -74.06 -0.53 19.88 16 39 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.03 1.36 7.94 -2.39 -0.02 1.34 16 41 H 0.07 2.90 7.68 -2.39 -0.02 2.88 16 Total: -1.00 -58.94 318.60 1.58 -57.36 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.50 Total: 29.04 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 3.44 Total: -19.20 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -3.85 Total: -71.18 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.93 Total: -33.87 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.39 Total: -7.18 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -58.94 1.58 -57.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595557201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.965 kcal (2) G-P(sol) polarization free energy of solvation -58.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds