Wall clock time and date at job start Thu Apr 9 2020 13:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47195 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47151 * 120.00429 * 9 7 5 12 12 H 1.48503 * 109.46944 * 240.00418 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.34777 * 119.99828 * 274.72131 * 13 3 2 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 3 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 3 17 17 H 1.08999 * 109.47428 * 300.00343 * 16 14 13 18 18 C 1.53111 * 109.47909 * 179.97438 * 16 14 13 19 19 C 1.53356 * 109.52797 * 169.99206 * 18 16 14 20 20 C 1.50866 * 108.41148 * 49.97994 * 19 18 16 21 21 N 1.33580 * 128.03120 * 163.22615 * 20 19 18 22 22 C 1.30755 * 109.14538 * 180.15752 * 21 20 19 23 23 N 1.35310 * 108.76673 * 359.97438 * 22 21 20 24 24 H 0.97000 * 126.49032 * 179.97438 * 23 22 21 25 25 C 1.35028 * 123.98915 * 343.34292 * 20 19 18 26 26 C 1.50652 * 124.45391 * 359.82411 * 25 20 19 27 27 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 31 31 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 32 32 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 33 33 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 34 34 H 1.09005 * 109.46285 * 290.01363 * 18 16 14 35 35 H 1.09001 * 109.46589 * 49.97069 * 18 16 14 36 36 H 1.08994 * 109.68627 * 290.24616 * 19 18 16 37 37 H 1.09001 * 109.69543 * 169.72108 * 19 18 16 38 38 H 1.07997 * 125.60880 * 179.97438 * 22 21 20 39 39 H 1.09005 * 109.67913 * 223.88334 * 26 25 20 40 40 H 1.08992 * 109.68106 * 103.32822 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5989 1.5452 -0.1937 11 1 6.4963 -0.5192 -1.4626 12 1 6.4001 1.6156 -2.6091 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3650 15 8 -0.3373 2.6371 0.4323 16 6 0.0409 3.3485 2.6505 17 1 0.0693 2.6266 3.4667 18 6 -1.3767 3.9107 2.5149 19 6 -1.8765 4.3779 3.8874 20 6 -0.8201 5.2613 4.5037 21 7 -0.9526 6.1135 5.5238 22 6 0.1979 6.6915 5.7519 23 7 1.1068 6.2150 4.8701 24 1 2.0409 6.4695 4.8102 25 6 0.4619 5.3111 4.0828 26 6 1.0183 4.4932 2.9465 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8293 -0.0606 -2.9502 33 1 2.2720 2.1232 1.9978 34 1 -1.3683 4.7545 1.8248 35 1 -2.0399 3.1352 2.1316 36 1 -2.0516 3.5137 4.5281 37 1 -2.8024 4.9407 3.7691 38 1 0.3907 7.4279 6.5179 39 1 1.9882 4.0840 3.2293 40 1 1.1277 5.1205 2.0619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597507356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:21 Heat of formation + Delta-G solvation = -2.900587 kcal Electronic energy + Delta-G solvation = -21793.143930 eV Core-core repulsion = 18607.692560 eV Total energy + Delta-G solvation = -3185.451369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33231 -39.35497 -36.24449 -34.88318 -33.25952 -32.36702 -31.04484 -29.71947 -29.08684 -26.91520 -24.07472 -23.24875 -22.41605 -21.60324 -20.21528 -19.34225 -18.81844 -17.94120 -17.08075 -15.77795 -15.51763 -15.27103 -14.95891 -14.48041 -14.14206 -13.92869 -13.62603 -13.37319 -13.21004 -12.70760 -12.58897 -12.17388 -11.80033 -11.44886 -11.40306 -11.22568 -11.02737 -10.90405 -10.86147 -10.78116 -10.32906 -10.16673 -9.93596 -9.89004 -9.63343 -9.06065 -8.91728 -8.51866 -8.20270 -7.82304 -6.14892 -4.24391 1.94775 2.94779 3.04457 3.20478 3.28579 3.30399 3.43303 4.05599 4.33368 4.40486 4.74095 4.84861 4.98925 5.16327 5.19071 5.20593 5.36500 5.54490 5.56724 5.69133 5.80405 5.99546 6.02340 6.18062 6.32538 6.39392 6.43304 6.46437 6.66351 6.72338 7.04004 7.19748 7.28137 7.36711 7.45582 7.60386 7.72179 7.88874 8.00250 8.17074 8.66542 8.76084 9.13883 9.43452 10.90378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.004429 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.765836 B = 6320.661831 C = 7296.133312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.506 3.494 15 O -0.544 6.544 16 C -0.102 4.102 17 H 0.095 0.905 18 C -0.097 4.097 19 C -0.034 4.034 20 C 0.004 3.996 21 N -0.487 5.487 22 C 0.170 3.830 23 N -0.561 5.561 24 H 0.420 0.580 25 C -0.019 4.019 26 C -0.033 4.033 27 H 0.022 0.978 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.206 0.794 39 H 0.080 0.920 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 8.664 13.299 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.423 6.423 16 C -0.124 4.124 17 H 0.113 0.887 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.126 4.126 21 N -0.206 5.206 22 C -0.112 4.112 23 N -0.164 5.164 24 H 0.257 0.743 25 C -0.135 4.135 26 C -0.072 4.072 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.223 0.777 39 H 0.098 0.902 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.689 8.664 12.861 16.200 hybrid contribution 2.710 0.080 -0.036 2.712 sum -1.979 8.743 12.825 15.647 Atomic orbital electron populations 1.21835 0.98315 0.98036 1.01248 1.21932 0.92657 0.99845 1.02217 1.18781 0.94115 0.89219 0.81132 0.93304 1.21263 0.90789 1.38955 1.06210 0.92161 1.24883 0.98503 0.94837 0.95430 1.69903 1.35003 1.37635 1.09315 0.86429 0.85001 0.77796 0.78059 1.19839 1.20865 1.20904 1.46519 1.14793 1.55835 1.18429 1.20199 0.82767 0.79342 0.88693 1.90672 1.51261 1.60099 1.40227 1.21352 0.96464 0.96977 0.97614 0.88722 1.21403 0.94508 1.01665 0.95921 1.19993 0.95352 0.96762 0.95098 1.20595 0.93642 1.01201 0.97112 1.69965 1.23787 1.10346 1.16544 1.24987 0.84718 1.03425 0.98080 1.42942 1.12997 1.33161 1.27279 0.74276 1.20990 0.94271 0.98878 0.99388 1.20028 0.98147 0.94871 0.94159 0.95891 0.94236 0.93150 0.88364 0.95097 0.92614 0.78150 0.91129 0.89849 0.90696 0.90333 0.77718 0.90185 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.54 2.24 -69.08 -0.15 6.38 16 4 H 0.05 1.39 7.57 -51.93 -0.39 0.99 16 5 C -0.53 -13.65 8.73 -34.44 -0.30 -13.95 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.71 -13.77 4.92 -54.93 -0.27 -14.04 16 14 C 0.51 9.29 5.71 -10.98 -0.06 9.23 16 15 O -0.54 -11.99 12.97 5.55 0.07 -11.91 16 16 C -0.10 -1.41 2.50 -91.50 -0.23 -1.63 16 17 H 0.09 1.20 8.12 -51.93 -0.42 0.77 16 18 C -0.10 -1.30 4.64 -26.49 -0.12 -1.42 16 19 C -0.03 -0.41 6.30 -27.62 -0.17 -0.59 16 20 C 0.00 0.06 6.98 -82.89 -0.58 -0.52 16 21 N -0.49 -6.62 11.25 -10.74 -0.12 -6.74 16 22 C 0.17 1.70 13.05 -89.92 -1.17 0.52 16 23 N -0.56 -5.23 6.14 -10.28 -0.06 -5.29 16 24 H 0.42 2.51 8.96 -40.82 -0.37 2.14 16 25 C -0.02 -0.23 7.08 -81.86 -0.58 -0.81 16 26 C -0.03 -0.40 5.43 -27.70 -0.15 -0.55 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.83 5.66 -51.93 -0.29 0.54 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.51 8.21 -40.82 -0.34 6.18 16 34 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 35 H 0.08 1.17 7.76 -51.93 -0.40 0.77 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 40 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 LS Contribution 320.25 15.07 4.83 4.83 Total: -1.00 -31.70 320.25 -9.24 -40.94 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.84 Total: 8.26 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -3.45 Total: -7.55 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.17 Total: -49.70 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.70 -9.24 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597507356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.039 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds