Wall clock time and date at job start Thu Apr 9 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08998 * 109.47083 * 54.99682 * 3 2 1 5 5 C 1.50691 * 109.47416 * 175.00252 * 3 2 1 6 6 H 1.08008 * 120.00338 * 119.99921 * 5 3 2 7 7 C 1.37874 * 120.00158 * 299.72057 * 5 3 2 8 8 N 1.31519 * 120.00526 * 180.27598 * 7 5 3 9 9 Si 1.86808 * 119.99916 * 0.28064 * 7 5 3 10 10 H 1.48499 * 109.47126 * 89.99426 * 9 7 5 11 11 H 1.48494 * 109.47155 * 209.99912 * 9 7 5 12 12 H 1.48507 * 109.46619 * 329.99756 * 9 7 5 13 13 N 1.46501 * 109.46812 * 295.00220 * 3 2 1 14 14 C 1.34780 * 120.00035 * 84.99926 * 13 3 2 15 15 O 1.21624 * 120.00032 * 355.66969 * 14 13 3 16 16 C 1.47164 * 119.99936 * 175.66975 * 14 13 3 17 17 C 1.38406 * 126.88669 * 269.52777 * 16 14 13 18 18 C 1.50700 * 127.31682 * 359.97438 * 17 16 14 19 19 C 1.53002 * 117.50001 * 188.62653 * 18 17 16 20 20 C 1.53002 * 117.50033 * 120.00077 * 18 17 16 21 21 C 1.39671 * 105.36231 * 179.97438 * 17 16 14 22 22 N 1.30866 * 107.85921 * 0.34720 * 21 17 16 23 23 N 1.28446 * 110.92953 * 359.77728 * 22 21 17 24 24 C 1.46493 * 125.19079 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.46670 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47208 * 300.00051 * 1 2 3 27 27 H 1.09001 * 109.46959 * 60.00238 * 1 2 3 28 28 H 1.09007 * 109.47271 * 240.00050 * 2 1 3 29 29 H 1.09004 * 109.47705 * 120.00301 * 2 1 3 30 30 H 0.97000 * 120.00099 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99941 * 264.99632 * 13 3 2 32 32 H 1.09007 * 115.55157 * 334.33184 * 18 17 16 33 33 H 1.09006 * 117.49711 * 359.97438 * 19 18 17 34 34 H 1.08997 * 117.50518 * 145.02026 * 19 18 17 35 35 H 1.08993 * 117.50133 * 214.97716 * 20 18 17 36 36 H 1.09004 * 117.49492 * 0.02562 * 20 18 17 37 37 H 1.08002 * 126.07107 * 180.11218 * 21 17 16 38 38 H 1.08999 * 109.47298 * 274.96317 * 24 23 22 39 39 H 1.09003 * 109.47260 * 34.95843 * 24 23 22 40 40 H 1.09001 * 109.46972 * 154.96312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1431 0.8835 1.2306 8 7 5.4536 0.8899 1.3412 9 14 3.0962 0.1145 2.5731 10 1 2.8804 -1.3231 2.2701 11 1 3.7907 0.2464 3.8790 12 1 1.7851 0.8091 2.6373 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3705 2.5642 -0.4612 16 6 0.0806 3.4045 -2.5885 17 6 0.2637 4.7561 -2.8235 18 6 0.8639 5.7731 -1.8872 19 6 0.7764 7.2456 -2.2935 20 6 2.1180 6.5127 -2.3574 21 6 -0.2261 4.9772 -4.1127 22 7 -0.6645 3.8349 -4.5769 23 7 -0.5015 2.8965 -3.7150 24 6 -0.8814 1.4953 -3.9106 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8765 0.4951 2.1198 31 1 2.2719 2.1231 -1.9978 32 1 0.7865 5.5381 -0.8256 33 1 0.2851 7.4787 -3.2382 34 1 0.6413 7.9797 -1.4992 35 1 2.8654 6.7647 -1.6052 36 1 2.5087 6.2640 -3.3442 37 1 -0.2437 5.9237 -4.6326 38 1 -1.9319 1.3640 -3.6511 39 1 -0.7277 1.2194 -4.9539 40 1 -0.2673 0.8599 -3.2725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:30 Heat of formation + Delta-G solvation = 69.610495 kcal Electronic energy + Delta-G solvation = -22167.060818 eV Core-core repulsion = 18984.753765 eV Total energy + Delta-G solvation = -3182.307053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.42323 -39.09675 -37.14889 -35.41586 -33.10215 -32.50915 -31.82647 -30.34181 -27.59884 -27.06188 -23.87081 -23.01759 -22.44884 -22.19862 -20.34863 -19.91947 -19.50530 -18.00217 -16.53259 -16.22534 -15.71521 -15.56722 -15.36589 -14.76599 -14.45730 -14.16585 -13.73160 -13.20483 -13.02355 -12.91128 -12.75756 -12.44582 -12.01940 -11.94874 -11.78598 -11.44899 -11.17256 -11.01930 -10.89626 -10.71947 -10.59606 -10.22689 -10.00159 -9.74501 -9.41606 -9.32499 -9.03840 -8.82483 -8.39745 -8.21865 -6.26396 -4.29790 1.80206 2.33636 2.67625 3.08564 3.18373 3.31184 3.34788 3.79593 4.06925 4.25766 4.42199 4.86990 4.96241 5.02775 5.05971 5.06443 5.18618 5.25188 5.30433 5.38939 5.59610 5.70317 5.86208 5.92372 5.94951 6.04144 6.06855 6.20589 6.35963 6.52777 6.58432 6.60441 6.71756 6.81162 6.84846 7.12633 7.17632 7.39785 8.02430 8.13573 8.39548 8.63982 8.76472 9.33162 10.85472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.006003 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.956573 B = 4662.945532 C = 5558.881011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.082 0.918 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.881 3.119 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.260 1.260 13 N -0.682 5.682 14 C 0.578 3.422 15 O -0.530 6.530 16 C -0.012 4.012 17 C -0.129 4.129 18 C -0.080 4.080 19 C -0.173 4.173 20 C -0.167 4.167 21 C 0.006 3.994 22 N -0.291 5.291 23 N -0.276 5.276 24 C 0.088 3.912 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.398 0.602 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 5.241 -9.617 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.140 3.860 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.100 0.900 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.330 5.330 14 C 0.359 3.641 15 O -0.407 6.407 16 C -0.140 4.140 17 C -0.139 4.139 18 C -0.100 4.100 19 C -0.210 4.210 20 C -0.204 4.204 21 C -0.172 4.172 22 N -0.121 5.121 23 N -0.063 5.063 24 C -0.052 4.052 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.198 0.802 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.522 4.427 -9.783 15.034 hybrid contribution 0.248 -0.185 1.053 1.098 sum -10.274 4.242 -8.729 14.134 Atomic orbital electron populations 1.21925 0.96898 0.99063 1.02328 1.22311 0.94333 0.99826 1.01356 1.19245 0.95938 0.88536 0.82276 0.93153 1.21010 0.88355 1.40203 1.07885 0.90035 1.24817 0.94857 0.95092 0.97583 1.69862 1.08684 1.44332 1.29705 0.86938 0.81013 0.79979 0.81049 1.20183 1.22033 1.18431 1.46221 1.14293 1.54251 1.18233 1.16991 0.83270 0.78927 0.84906 1.90820 1.49950 1.59477 1.40411 1.21597 1.06662 0.94660 0.91121 1.19744 1.06652 0.91462 0.96058 1.20184 1.01339 0.90531 0.97907 1.22955 1.01015 0.93917 1.03087 1.23009 0.90985 1.03313 1.03090 1.23273 1.03149 0.96472 0.94326 1.73085 1.22599 0.97290 1.19171 1.45457 1.43054 1.08712 1.09102 1.22167 1.02611 0.75612 1.04835 0.94835 0.92692 0.93156 0.92193 0.92511 0.92198 0.76833 0.86944 0.88745 0.88593 0.88305 0.88652 0.80220 0.89723 0.88506 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.46 37.16 0.31 -2.44 16 2 C -0.14 -2.95 5.11 -26.73 -0.14 -3.08 16 3 C 0.24 5.52 1.83 -69.09 -0.13 5.40 16 4 H 0.05 1.27 6.69 -51.93 -0.35 0.92 16 5 C -0.54 -14.02 9.31 -34.45 -0.32 -14.34 16 6 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 9 Si 0.88 21.08 24.41 -169.99 -4.15 16.93 16 10 H -0.27 -6.37 6.84 56.52 0.39 -5.99 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.14 6.52 56.52 0.37 -5.77 16 13 N -0.68 -13.19 5.02 -56.10 -0.28 -13.47 16 14 C 0.58 10.90 5.56 -12.64 -0.07 10.83 16 15 O -0.53 -11.50 13.91 5.26 0.07 -11.43 16 16 C -0.01 -0.19 6.71 -82.06 -0.55 -0.74 16 17 C -0.13 -1.97 5.94 -104.03 -0.62 -2.59 16 18 C -0.08 -1.14 6.12 -91.77 -0.56 -1.70 16 19 C -0.17 -1.88 10.05 -26.73 -0.27 -2.15 16 20 C -0.17 -2.02 10.23 -26.73 -0.27 -2.29 16 21 C 0.01 0.08 11.41 -17.43 -0.20 -0.12 16 22 N -0.29 -4.30 11.90 30.59 0.36 -3.94 16 23 N -0.28 -4.06 3.75 -63.88 -0.24 -4.30 16 24 C 0.09 0.97 11.22 59.84 0.67 1.64 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 1.12 7.80 -51.93 -0.40 0.71 16 27 H 0.05 0.92 5.54 -51.93 -0.29 0.63 16 28 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 29 H 0.06 1.27 3.24 -51.93 -0.17 1.10 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.40 7.11 8.53 -40.82 -0.35 6.76 16 32 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.09 0.89 7.12 -51.93 -0.37 0.52 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.18 1.87 7.34 -52.49 -0.39 1.49 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.04 7.65 -51.93 -0.40 0.65 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -31.04 326.15 -6.47 -37.52 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.69 Total: 8.22 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.24 Total: -9.48 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.62 Total: -46.68 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.15 Total: 16.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.04 -6.47 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.128 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds