Wall clock time and date at job start Thu Apr 9 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08998 * 109.47083 * 54.99682 * 3 2 1 5 5 C 1.50691 * 109.47416 * 175.00252 * 3 2 1 6 6 H 1.08008 * 120.00338 * 119.99921 * 5 3 2 7 7 C 1.37874 * 120.00158 * 299.72057 * 5 3 2 8 8 N 1.31519 * 120.00526 * 180.27598 * 7 5 3 9 9 Si 1.86808 * 119.99916 * 0.28064 * 7 5 3 10 10 H 1.48499 * 109.47126 * 89.99426 * 9 7 5 11 11 H 1.48494 * 109.47155 * 209.99912 * 9 7 5 12 12 H 1.48507 * 109.46619 * 329.99756 * 9 7 5 13 13 N 1.46501 * 109.46812 * 295.00220 * 3 2 1 14 14 C 1.34780 * 120.00035 * 84.99926 * 13 3 2 15 15 O 1.21624 * 120.00032 * 355.66969 * 14 13 3 16 16 C 1.47164 * 119.99936 * 175.66975 * 14 13 3 17 17 C 1.38406 * 126.88669 * 269.52777 * 16 14 13 18 18 C 1.50700 * 127.31682 * 359.97438 * 17 16 14 19 19 C 1.53002 * 117.50001 * 188.62653 * 18 17 16 20 20 C 1.53002 * 117.50033 * 120.00077 * 18 17 16 21 21 C 1.39671 * 105.36231 * 179.97438 * 17 16 14 22 22 N 1.30866 * 107.85921 * 0.34720 * 21 17 16 23 23 N 1.28446 * 110.92953 * 359.77728 * 22 21 17 24 24 C 1.46493 * 125.19079 * 180.02562 * 23 22 21 25 25 H 1.09001 * 109.46670 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47208 * 300.00051 * 1 2 3 27 27 H 1.09001 * 109.46959 * 60.00238 * 1 2 3 28 28 H 1.09007 * 109.47271 * 240.00050 * 2 1 3 29 29 H 1.09004 * 109.47705 * 120.00301 * 2 1 3 30 30 H 0.97000 * 120.00099 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99941 * 264.99632 * 13 3 2 32 32 H 1.09007 * 115.55157 * 334.33184 * 18 17 16 33 33 H 1.09006 * 117.49711 * 359.97438 * 19 18 17 34 34 H 1.08997 * 117.50518 * 145.02026 * 19 18 17 35 35 H 1.08993 * 117.50133 * 214.97716 * 20 18 17 36 36 H 1.09004 * 117.49492 * 0.02562 * 20 18 17 37 37 H 1.08002 * 126.07107 * 180.11218 * 21 17 16 38 38 H 1.08999 * 109.47298 * 274.96317 * 24 23 22 39 39 H 1.09003 * 109.47260 * 34.95843 * 24 23 22 40 40 H 1.09001 * 109.46972 * 154.96312 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1431 0.8835 1.2306 8 7 5.4536 0.8899 1.3412 9 14 3.0962 0.1145 2.5731 10 1 2.8804 -1.3231 2.2701 11 1 3.7907 0.2464 3.8790 12 1 1.7851 0.8091 2.6373 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3705 2.5642 -0.4612 16 6 0.0806 3.4045 -2.5885 17 6 0.2637 4.7561 -2.8235 18 6 0.8639 5.7731 -1.8872 19 6 0.7764 7.2456 -2.2935 20 6 2.1180 6.5127 -2.3574 21 6 -0.2261 4.9772 -4.1127 22 7 -0.6645 3.8349 -4.5769 23 7 -0.5015 2.8965 -3.7150 24 6 -0.8814 1.4953 -3.9106 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8765 0.4951 2.1198 31 1 2.2719 2.1231 -1.9978 32 1 0.7865 5.5381 -0.8256 33 1 0.2851 7.4787 -3.2382 34 1 0.6413 7.9797 -1.4992 35 1 2.8654 6.7647 -1.6052 36 1 2.5087 6.2640 -3.3442 37 1 -0.2437 5.9237 -4.6326 38 1 -1.9319 1.3640 -3.6511 39 1 -0.7277 1.2194 -4.9539 40 1 -0.2673 0.8599 -3.2725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:30 Heat of formation + Delta-G solvation = 48.832918 kcal Electronic energy + Delta-G solvation = -22167.961801 eV Core-core repulsion = 18984.753765 eV Total energy + Delta-G solvation = -3183.208036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.55216 -40.68911 -38.14693 -37.17082 -34.47078 -34.09263 -33.49110 -31.60792 -29.43578 -28.04364 -25.30147 -24.47116 -23.87313 -23.16400 -21.91101 -21.18738 -20.85613 -19.47368 -18.27306 -17.69372 -17.12524 -16.91045 -16.56633 -16.24593 -15.95636 -15.31221 -15.14130 -14.94873 -14.40201 -14.12830 -13.82841 -13.73338 -13.69668 -13.66037 -13.04670 -12.89454 -12.79796 -12.43705 -12.31861 -11.96814 -11.87335 -11.67679 -11.42815 -11.28959 -11.24581 -11.07234 -10.87840 -10.17388 -9.92108 -9.50502 -8.39080 -6.45557 0.60219 1.11307 1.26481 1.35277 1.44136 1.60658 1.73887 2.24675 2.35945 2.96380 3.07802 3.42076 3.64966 3.93153 3.98712 4.14580 4.19151 4.24430 4.28862 4.29780 4.31214 4.41453 4.51474 4.54074 4.77692 4.83493 4.93296 4.98475 5.07297 5.07962 5.18609 5.27561 5.32057 5.33483 5.47605 5.49686 5.52582 5.75261 6.08504 6.54356 6.68010 7.02381 7.08926 7.25544 8.76005 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.006003 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.956573 B = 4662.945532 C = 5558.881011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.251 3.749 4 H 0.025 0.975 5 C -0.534 4.534 6 H 0.055 0.945 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.934 3.066 10 H -0.257 1.257 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.680 5.680 14 C 0.589 3.411 15 O -0.560 6.560 16 C -0.042 4.042 17 C -0.129 4.129 18 C -0.113 4.113 19 C -0.144 4.144 20 C -0.165 4.165 21 C 0.008 3.992 22 N -0.294 5.294 23 N -0.274 5.274 24 C 0.078 3.922 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.271 0.729 31 H 0.405 0.595 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.215 0.785 38 H 0.096 0.904 39 H 0.122 0.878 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 5.487 -11.041 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.147 3.853 4 H 0.043 0.957 5 C -0.572 4.572 6 H 0.073 0.927 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.761 3.239 10 H -0.183 1.183 11 H -0.221 1.221 12 H -0.183 1.183 13 N -0.328 5.328 14 C 0.373 3.627 15 O -0.439 6.439 16 C -0.171 4.171 17 C -0.140 4.140 18 C -0.133 4.133 19 C -0.181 4.181 20 C -0.202 4.202 21 C -0.169 4.169 22 N -0.125 5.125 23 N -0.062 5.062 24 C -0.061 4.061 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.231 0.769 38 H 0.115 0.885 39 H 0.140 0.860 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.118 4.666 -11.237 17.172 hybrid contribution 0.765 -0.170 1.426 1.627 sum -11.353 4.495 -9.811 15.664 Atomic orbital electron populations 1.21821 0.95036 1.00775 1.01697 1.22221 0.95941 0.98024 1.01439 1.18903 0.93501 0.89909 0.82973 0.95708 1.21216 0.90088 1.38984 1.06960 0.92660 1.25519 0.95711 0.95786 0.99725 1.69973 1.10308 1.46003 1.30734 0.86077 0.79373 0.80103 0.78376 1.18282 1.22086 1.18349 1.46023 1.14936 1.54458 1.17346 1.17138 0.82318 0.77938 0.85329 1.90795 1.50716 1.60502 1.41867 1.21302 1.09283 0.95258 0.91262 1.20010 1.06058 0.91044 0.96878 1.20159 1.03935 0.92779 0.96423 1.23099 0.99229 0.91500 1.04238 1.23056 0.91061 1.02918 1.03204 1.23772 1.02056 0.97441 0.93595 1.73089 1.22555 0.97716 1.19104 1.45741 1.42457 1.09787 1.08232 1.22470 1.03243 0.73907 1.06480 0.91861 0.94473 0.92707 0.90914 0.93523 0.92014 0.76022 0.89795 0.86439 0.87397 0.88580 0.87922 0.76882 0.88507 0.85982 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.46 71.98 0.61 -4.34 16 2 C -0.14 -5.67 5.11 30.59 0.16 -5.51 16 3 C 0.25 11.54 1.83 44.24 0.08 11.62 16 4 H 0.03 1.28 6.69 -2.39 -0.02 1.27 16 5 C -0.53 -28.57 9.31 25.60 0.24 -28.33 16 6 H 0.06 3.18 7.98 -2.91 -0.02 3.15 16 7 C 0.03 1.81 5.45 84.65 0.46 2.27 16 8 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 9 Si 0.93 43.65 24.41 68.60 1.67 45.32 16 10 H -0.26 -11.23 6.84 99.48 0.68 -10.55 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 12 H -0.26 -11.98 6.52 99.48 0.65 -11.33 16 13 N -0.68 -26.59 5.02 -449.64 -2.26 -28.84 16 14 C 0.59 22.37 5.56 86.59 0.48 22.85 16 15 O -0.56 -24.57 13.91 -4.11 -0.06 -24.63 16 16 C -0.04 -1.38 6.71 40.79 0.27 -1.11 16 17 C -0.13 -3.81 5.94 -19.48 -0.12 -3.93 16 18 C -0.11 -3.16 6.12 -11.54 -0.07 -3.23 16 19 C -0.14 -2.78 10.05 30.60 0.31 -2.47 16 20 C -0.17 -3.79 10.23 30.60 0.31 -3.48 16 21 C 0.01 0.20 11.41 85.18 0.97 1.18 16 22 N -0.29 -7.98 11.90 -57.14 -0.68 -8.66 16 23 N -0.27 -7.62 3.75 -356.03 -1.33 -8.96 16 24 C 0.08 1.57 11.22 127.77 1.43 3.00 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.47 7.80 -2.39 -0.02 1.45 16 27 H 0.05 1.93 5.54 -2.39 -0.01 1.91 16 28 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 29 H 0.05 2.02 3.24 -2.38 -0.01 2.01 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.40 14.69 8.53 -92.71 -0.79 13.90 16 32 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 33 H 0.12 1.74 7.12 -2.38 -0.02 1.72 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.21 3.58 7.34 -2.91 -0.02 3.56 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 1.88 7.65 -2.39 -0.02 1.87 16 Total: -1.00 -67.65 326.15 2.97 -64.68 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.18 Total: 27.33 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.14 Total: -11.48 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.97 Total: -101.23 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Total: -67.65 2.97 -64.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.509 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds