Wall clock time and date at job start Thu Apr 9 2020 13:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47414 * 2 1 4 4 H 1.08994 * 109.47195 * 54.33697 * 3 2 1 5 5 C 1.50698 * 109.47297 * 174.34315 * 3 2 1 6 6 H 1.07995 * 119.99909 * 114.40532 * 5 3 2 7 7 C 1.37875 * 120.00091 * 294.40592 * 5 3 2 8 8 N 1.31505 * 120.00223 * 153.65437 * 7 5 3 9 9 Si 1.86799 * 119.99775 * 333.65742 * 7 5 3 10 10 H 1.48504 * 109.47171 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47048 * 299.99647 * 9 7 5 12 12 H 1.48500 * 109.47547 * 59.99905 * 9 7 5 13 13 N 1.46507 * 109.46822 * 294.34322 * 3 2 1 14 14 C 1.34777 * 119.99962 * 84.99711 * 13 3 2 15 15 O 1.21582 * 120.00222 * 0.02562 * 14 13 3 16 16 N 1.34782 * 119.99669 * 180.02562 * 14 13 3 17 17 C 1.39938 * 119.99756 * 184.75302 * 16 14 13 18 18 C 1.38949 * 120.03313 * 331.41381 * 17 16 14 19 19 C 1.38144 * 120.07714 * 179.71700 * 18 17 16 20 20 C 1.38167 * 120.14416 * 0.56024 * 19 18 17 21 21 C 1.38942 * 120.06296 * 359.71802 * 20 19 18 22 22 N 1.39676 * 120.03740 * 180.02562 * 21 20 19 23 23 C 1.38712 * 120.03535 * 151.68919 * 17 16 14 24 24 C 1.50700 * 120.06399 * 0.02680 * 23 17 16 25 25 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47290 * 300.00424 * 1 2 3 27 27 H 1.08999 * 109.46961 * 60.00093 * 1 2 3 28 28 H 1.09001 * 109.47290 * 239.99576 * 2 1 3 29 29 H 1.08999 * 109.46961 * 119.99907 * 2 1 3 30 30 H 0.97001 * 120.00320 * 354.96336 * 8 7 5 31 31 H 0.96998 * 119.99893 * 265.00010 * 13 3 2 32 32 H 0.96997 * 119.99716 * 4.74856 * 16 14 13 33 33 H 1.08000 * 119.96010 * 359.97438 * 18 17 16 34 34 H 1.08006 * 119.92583 * 180.27600 * 19 18 17 35 35 H 1.08001 * 119.96685 * 179.73674 * 20 19 18 36 36 H 0.97000 * 119.99656 * 179.97438 * 22 21 20 37 37 H 0.96996 * 120.00097 * 359.97438 * 22 21 20 38 38 H 1.08997 * 109.47471 * 90.00481 * 24 23 17 39 39 H 1.09011 * 109.46885 * 209.99906 * 24 23 17 40 40 H 1.08995 * 109.47650 * 329.99148 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 0.8349 5 6 3.5405 1.4448 0.1400 6 1 4.1579 1.8038 -0.6700 7 6 4.1251 0.9885 1.3024 8 7 5.3461 0.5008 1.2768 9 14 3.1826 1.0629 2.9134 10 1 4.0259 0.5148 4.0060 11 1 2.8330 2.4738 3.2177 12 1 1.9396 0.2588 2.7975 13 7 1.6660 2.0927 -1.2585 14 6 0.4500 2.6591 -1.3890 15 8 -0.3364 2.6309 -0.4622 16 7 0.1058 3.2568 -2.5470 17 6 -1.1161 3.9309 -2.6501 18 6 -2.1977 3.5328 -1.8740 19 6 -3.4027 4.2014 -1.9708 20 6 -3.5401 5.2604 -2.8476 21 6 -2.4642 5.6598 -3.6307 22 7 -2.6035 6.7307 -4.5165 23 6 -1.2505 4.9937 -3.5314 24 6 -0.0814 5.4236 -4.3795 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8082 0.3942 0.4306 31 1 2.2935 2.1154 -1.9978 32 1 0.7051 3.2196 -3.3087 33 1 -2.0950 2.7023 -1.1912 34 1 -4.2405 3.8927 -1.3631 35 1 -4.4847 5.7783 -2.9241 36 1 -1.8519 7.0093 -5.0626 37 1 -3.4519 7.1958 -4.5854 38 1 -0.0963 4.8774 -5.3226 39 1 -0.1505 6.4932 -4.5781 40 1 0.8482 5.2116 -3.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599608673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:45 Heat of formation + Delta-G solvation = -7.154239 kcal Electronic energy + Delta-G solvation = -21702.333952 eV Core-core repulsion = 18516.698130 eV Total energy + Delta-G solvation = -3185.635822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44441 -38.86383 -35.90830 -34.62218 -33.99238 -32.49279 -31.76932 -30.85507 -28.23224 -27.08367 -26.51762 -22.92559 -22.19561 -21.21725 -20.58533 -19.67618 -18.50811 -17.73805 -17.12936 -16.66773 -15.60808 -15.47698 -14.79568 -14.54673 -14.12565 -13.99752 -13.66245 -13.32970 -13.18738 -12.61561 -12.56399 -12.51842 -12.28897 -12.25891 -11.76402 -11.43645 -11.16793 -10.81401 -10.76510 -10.69418 -10.41637 -9.85615 -9.79639 -9.72058 -9.25232 -9.17593 -8.24694 -8.19597 -7.84923 -7.32169 -6.62058 -4.20344 1.53012 1.83154 3.10652 3.42608 3.47808 3.63557 3.66122 3.86934 4.12308 4.44782 4.80703 4.95200 5.00827 5.07988 5.24627 5.51449 5.58080 5.61709 5.79606 5.90329 6.09274 6.11578 6.13344 6.30653 6.36203 6.55032 6.58889 6.72750 6.82602 6.87863 6.98585 7.07181 7.19045 7.25503 7.44163 7.52547 7.53868 7.68778 7.83154 8.24629 8.63794 8.74194 9.14571 9.44465 10.76175 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.004303 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.713707 B = 6505.089711 C = 6914.944952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.267 3.733 4 H 0.042 0.958 5 C -0.630 4.630 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.886 5.886 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.713 5.713 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.691 5.691 17 C 0.224 3.776 18 C -0.182 4.182 19 C -0.060 4.060 20 C -0.223 4.223 21 C 0.230 3.770 22 N -0.881 5.881 23 C -0.207 4.207 24 C -0.102 4.102 25 H 0.029 0.971 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.271 0.729 31 H 0.389 0.611 32 H 0.401 0.599 33 H 0.151 0.849 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.395 0.605 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 8.670 -12.298 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.164 3.836 4 H 0.059 0.941 5 C -0.667 4.667 6 H 0.080 0.920 7 C -0.158 4.158 8 N -0.517 5.517 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.364 5.364 14 C 0.394 3.606 15 O -0.451 6.451 16 N -0.337 5.337 17 C 0.127 3.873 18 C -0.204 4.204 19 C -0.079 4.079 20 C -0.247 4.247 21 C 0.126 3.874 22 N -0.422 5.422 23 C -0.214 4.214 24 C -0.159 4.159 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.222 0.778 32 H 0.236 0.764 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.224 0.776 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.390 8.233 -9.709 19.213 hybrid contribution 0.498 0.678 -2.692 2.820 sum -13.893 8.910 -12.401 20.644 Atomic orbital electron populations 1.21883 0.97338 0.98759 1.02057 1.22246 0.93792 0.99766 1.01312 1.18938 0.95531 0.88169 0.81009 0.94064 1.21970 0.89703 1.50054 1.04976 0.91981 1.25595 0.96552 0.91609 1.02093 1.70873 1.14141 1.36228 1.30459 0.84235 0.76081 0.77702 0.76414 1.20873 1.20634 1.19835 1.45592 1.13114 1.58768 1.18912 1.16120 0.83571 0.78756 0.82171 1.90831 1.50741 1.64122 1.39413 1.42839 1.19830 1.56531 1.14497 1.17144 0.84614 0.90293 0.95292 1.21440 0.91134 1.04209 1.03640 1.20766 0.96934 0.94123 0.96087 1.20441 0.97960 1.03177 1.03085 1.17191 0.92643 0.87668 0.89906 1.42459 1.16608 1.36380 1.46730 1.18887 0.95624 1.00115 1.06821 1.20471 0.96128 1.00727 0.98538 0.95227 0.92939 0.93225 0.93254 0.91863 0.91881 0.77834 0.76381 0.83134 0.86211 0.86809 0.77626 0.77713 0.92025 0.92224 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.53 37.16 0.32 -2.59 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.09 16 3 C 0.27 6.34 1.84 -69.08 -0.13 6.21 16 4 H 0.04 1.07 6.13 -51.93 -0.32 0.76 16 5 C -0.63 -16.82 8.92 -34.44 -0.31 -17.13 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.39 5.15 -17.82 -0.09 1.30 16 8 N -0.89 -25.95 13.69 55.43 0.76 -25.19 16 9 Si 1.03 24.96 26.57 -169.99 -4.52 20.44 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.27 6.35 56.52 0.36 -5.92 16 13 N -0.71 -14.24 5.03 -59.81 -0.30 -14.54 16 14 C 0.69 13.36 7.04 -86.91 -0.61 12.75 16 15 O -0.57 -12.63 10.53 5.29 0.06 -12.57 16 16 N -0.69 -10.61 4.91 -14.24 -0.07 -10.68 16 17 C 0.22 3.46 6.39 -83.72 -0.53 2.92 16 18 C -0.18 -2.95 8.76 -39.35 -0.34 -3.30 16 19 C -0.06 -0.81 10.03 -39.64 -0.40 -1.21 16 20 C -0.22 -2.70 9.89 -39.35 -0.39 -3.09 16 21 C 0.23 2.73 6.73 -83.82 -0.56 2.17 16 22 N -0.88 -7.24 8.99 32.40 0.29 -6.95 16 23 C -0.21 -2.68 5.91 -104.24 -0.62 -3.30 16 24 C -0.10 -1.02 9.01 36.01 0.32 -0.69 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 1.11 7.88 -51.93 -0.41 0.71 16 27 H 0.05 1.00 5.63 -51.93 -0.29 0.71 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.48 5.79 -51.93 -0.30 1.18 16 30 H 0.27 7.84 8.73 -40.82 -0.36 7.48 16 31 H 0.39 6.87 8.54 -40.82 -0.35 6.52 16 32 H 0.40 4.94 7.57 -40.82 -0.31 4.63 16 33 H 0.15 2.78 5.71 -52.49 -0.30 2.48 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.39 2.69 6.82 -40.82 -0.28 2.41 16 37 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 6.55 -51.92 -0.34 0.16 16 40 H 0.06 0.67 7.05 -51.93 -0.37 0.31 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -31.32 317.58 -7.83 -39.15 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.35 Total: 14.62 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.49 Total: -9.05 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.68 Total: -57.37 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.06 Total: -12.57 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.52 Total: 20.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.32 -7.83 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599608673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.992 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds