Wall clock time and date at job start Thu Apr 9 2020 13:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47414 * 2 1 4 4 H 1.08994 * 109.47195 * 54.33697 * 3 2 1 5 5 C 1.50698 * 109.47297 * 174.34315 * 3 2 1 6 6 H 1.07995 * 119.99909 * 114.40532 * 5 3 2 7 7 C 1.37875 * 120.00091 * 294.40592 * 5 3 2 8 8 N 1.31505 * 120.00223 * 153.65437 * 7 5 3 9 9 Si 1.86799 * 119.99775 * 333.65742 * 7 5 3 10 10 H 1.48504 * 109.47171 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47048 * 299.99647 * 9 7 5 12 12 H 1.48500 * 109.47547 * 59.99905 * 9 7 5 13 13 N 1.46507 * 109.46822 * 294.34322 * 3 2 1 14 14 C 1.34777 * 119.99962 * 84.99711 * 13 3 2 15 15 O 1.21582 * 120.00222 * 0.02562 * 14 13 3 16 16 N 1.34782 * 119.99669 * 180.02562 * 14 13 3 17 17 C 1.39938 * 119.99756 * 184.75302 * 16 14 13 18 18 C 1.38949 * 120.03313 * 331.41381 * 17 16 14 19 19 C 1.38144 * 120.07714 * 179.71700 * 18 17 16 20 20 C 1.38167 * 120.14416 * 0.56024 * 19 18 17 21 21 C 1.38942 * 120.06296 * 359.71802 * 20 19 18 22 22 N 1.39676 * 120.03740 * 180.02562 * 21 20 19 23 23 C 1.38712 * 120.03535 * 151.68919 * 17 16 14 24 24 C 1.50700 * 120.06399 * 0.02680 * 23 17 16 25 25 H 1.09002 * 109.47317 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47290 * 300.00424 * 1 2 3 27 27 H 1.08999 * 109.46961 * 60.00093 * 1 2 3 28 28 H 1.09001 * 109.47290 * 239.99576 * 2 1 3 29 29 H 1.08999 * 109.46961 * 119.99907 * 2 1 3 30 30 H 0.97001 * 120.00320 * 354.96336 * 8 7 5 31 31 H 0.96998 * 119.99893 * 265.00010 * 13 3 2 32 32 H 0.96997 * 119.99716 * 4.74856 * 16 14 13 33 33 H 1.08000 * 119.96010 * 359.97438 * 18 17 16 34 34 H 1.08006 * 119.92583 * 180.27600 * 19 18 17 35 35 H 1.08001 * 119.96685 * 179.73674 * 20 19 18 36 36 H 0.97000 * 119.99656 * 179.97438 * 22 21 20 37 37 H 0.96996 * 120.00097 * 359.97438 * 22 21 20 38 38 H 1.08997 * 109.47471 * 90.00481 * 24 23 17 39 39 H 1.09011 * 109.46885 * 209.99906 * 24 23 17 40 40 H 1.08995 * 109.47650 * 329.99148 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 0.8349 5 6 3.5405 1.4448 0.1400 6 1 4.1579 1.8038 -0.6700 7 6 4.1251 0.9885 1.3024 8 7 5.3461 0.5008 1.2768 9 14 3.1826 1.0629 2.9134 10 1 4.0259 0.5148 4.0060 11 1 2.8330 2.4738 3.2177 12 1 1.9396 0.2588 2.7975 13 7 1.6660 2.0927 -1.2585 14 6 0.4500 2.6591 -1.3890 15 8 -0.3364 2.6309 -0.4622 16 7 0.1058 3.2568 -2.5470 17 6 -1.1161 3.9309 -2.6501 18 6 -2.1977 3.5328 -1.8740 19 6 -3.4027 4.2014 -1.9708 20 6 -3.5401 5.2604 -2.8476 21 6 -2.4642 5.6598 -3.6307 22 7 -2.6035 6.7307 -4.5165 23 6 -1.2505 4.9937 -3.5314 24 6 -0.0814 5.4236 -4.3795 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 5.8082 0.3942 0.4306 31 1 2.2935 2.1154 -1.9978 32 1 0.7051 3.2196 -3.3087 33 1 -2.0950 2.7023 -1.1912 34 1 -4.2405 3.8927 -1.3631 35 1 -4.4847 5.7783 -2.9241 36 1 -1.8519 7.0093 -5.0626 37 1 -3.4519 7.1958 -4.5854 38 1 -0.0963 4.8774 -5.3226 39 1 -0.1505 6.4932 -4.5781 40 1 0.8482 5.2116 -3.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599608673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:45 Heat of formation + Delta-G solvation = -29.650497 kcal Electronic energy + Delta-G solvation = -21703.309463 eV Core-core repulsion = 18516.698130 eV Total energy + Delta-G solvation = -3186.611333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.75551 -40.08265 -37.45644 -36.02039 -35.04928 -34.43603 -33.24161 -32.07733 -29.49352 -28.69158 -27.49902 -24.54642 -23.76244 -22.24029 -22.00261 -21.38724 -20.17183 -19.17546 -18.47401 -17.67314 -17.08850 -16.81542 -16.08443 -15.74336 -15.64345 -15.19174 -15.12783 -14.60949 -14.48432 -14.37213 -14.14081 -14.05158 -13.61246 -13.40696 -13.11030 -12.64057 -12.51980 -12.45432 -12.33068 -12.15008 -11.83621 -11.75180 -11.53267 -11.22179 -10.97965 -10.65656 -10.39151 -9.85182 -8.95909 -8.81283 -8.26355 -6.39522 0.48888 0.78319 1.48418 1.50439 1.69734 1.77069 2.21709 2.43470 2.93736 3.04324 3.09396 3.40373 4.03164 4.14077 4.30676 4.33767 4.42286 4.52728 4.63809 4.70147 4.77989 4.81284 4.87289 4.90203 5.10592 5.21783 5.24453 5.31796 5.41252 5.48034 5.51708 5.58609 5.67512 5.71805 5.84500 6.04036 6.14456 6.22492 6.56180 6.66753 7.07942 7.16740 7.28656 7.64655 8.56117 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.004303 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.713707 B = 6505.089711 C = 6914.944952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.021 0.979 5 C -0.627 4.627 6 H 0.043 0.957 7 C 0.010 3.990 8 N -0.914 5.914 9 Si 1.061 2.939 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.255 1.255 13 N -0.714 5.714 14 C 0.694 3.306 15 O -0.601 6.601 16 N -0.675 5.675 17 C 0.198 3.802 18 C -0.213 4.213 19 C -0.065 4.065 20 C -0.221 4.221 21 C 0.232 3.768 22 N -0.864 5.864 23 C -0.210 4.210 24 C -0.101 4.101 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.262 0.738 31 H 0.400 0.600 32 H 0.415 0.585 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.404 0.596 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.876 10.113 -13.788 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.039 0.961 5 C -0.664 4.664 6 H 0.061 0.939 7 C -0.194 4.194 8 N -0.548 5.548 9 Si 0.884 3.116 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.179 1.179 13 N -0.366 5.366 14 C 0.395 3.605 15 O -0.481 6.481 16 N -0.322 5.322 17 C 0.101 3.899 18 C -0.235 4.235 19 C -0.085 4.085 20 C -0.245 4.245 21 C 0.125 3.875 22 N -0.406 5.406 23 C -0.218 4.218 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.234 0.766 32 H 0.253 0.747 33 H 0.139 0.861 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.235 0.765 37 H 0.238 0.762 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.311 9.726 -11.284 22.090 hybrid contribution 1.014 0.359 -2.373 2.605 sum -15.297 10.084 -13.657 22.851 Atomic orbital electron populations 1.21739 0.95607 1.00096 1.01365 1.22133 0.95206 0.98442 1.00922 1.18610 0.93327 0.89147 0.82046 0.96104 1.22131 0.91332 1.48795 1.04167 0.93904 1.26607 0.96661 0.91224 1.04879 1.70960 1.15247 1.38570 1.29983 0.83797 0.75916 0.78251 0.73685 1.20553 1.20128 1.17919 1.45287 1.13957 1.59203 1.18164 1.16146 0.82840 0.78648 0.82900 1.90825 1.51383 1.65073 1.40838 1.42529 1.20292 1.55763 1.13643 1.17352 0.84126 0.91670 0.96730 1.21314 0.92945 1.04702 1.04580 1.20952 0.96449 0.94396 0.96668 1.20755 0.99212 1.02422 1.02062 1.17334 0.92122 0.88074 0.89974 1.42418 1.17746 1.34954 1.45442 1.19151 0.97120 0.99206 1.06320 1.20541 0.94519 1.02159 0.98618 0.92767 0.94173 0.93415 0.92846 0.93014 0.92843 0.76607 0.74699 0.86138 0.84777 0.84041 0.76492 0.76197 0.90283 0.90321 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.53 71.98 0.61 -4.62 16 2 C -0.13 -5.67 5.37 30.59 0.16 -5.50 16 3 C 0.27 13.05 1.84 44.24 0.08 13.13 16 4 H 0.02 1.10 6.13 -2.39 -0.01 1.09 16 5 C -0.63 -33.95 8.92 25.60 0.23 -33.72 16 6 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 7 C 0.01 0.54 5.15 84.66 0.44 0.97 16 8 N -0.91 -54.50 13.69 21.44 0.29 -54.20 16 9 Si 1.06 50.54 26.57 68.60 1.82 52.37 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.25 -11.32 6.35 99.48 0.63 -10.69 16 13 N -0.71 -28.61 5.03 -461.40 -2.32 -30.93 16 14 C 0.69 26.88 7.04 179.05 1.26 28.14 16 15 O -0.60 -26.98 10.53 -3.97 -0.04 -27.02 16 16 N -0.67 -20.46 4.91 -317.23 -1.56 -22.02 16 17 C 0.20 5.98 6.39 38.13 0.24 6.22 16 18 C -0.21 -6.95 8.76 22.42 0.20 -6.76 16 19 C -0.07 -1.71 10.03 22.23 0.22 -1.48 16 20 C -0.22 -4.76 9.89 22.42 0.22 -4.54 16 21 C 0.23 4.81 6.73 38.19 0.26 5.06 16 22 N -0.86 -10.81 8.99 -51.42 -0.46 -11.28 16 23 C -0.21 -5.00 5.91 -19.62 -0.12 -5.12 16 24 C -0.10 -1.75 9.01 71.24 0.64 -1.10 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 27 H 0.05 1.91 5.63 -2.39 -0.01 1.90 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.05 2.39 5.79 -2.39 -0.01 2.38 16 30 H 0.26 15.58 8.73 -92.71 -0.81 14.77 16 31 H 0.40 14.10 8.54 -92.71 -0.79 13.31 16 32 H 0.42 9.84 7.57 -92.71 -0.70 9.14 16 33 H 0.12 4.64 5.71 -2.91 -0.02 4.62 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.40 3.82 6.82 -92.71 -0.63 3.19 16 37 H 0.41 3.35 8.84 -92.71 -0.82 2.53 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.04 6.55 -2.38 -0.02 1.03 16 40 H 0.06 1.08 7.05 -2.39 -0.02 1.07 16 Total: -1.00 -68.45 317.58 0.24 -68.21 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -1.95 Total: 34.17 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.45 Total: -9.30 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -4.05 Total: -118.43 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.04 Total: -27.02 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.82 Total: 52.37 kcal Total: -68.45 0.24 -68.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599608673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.562 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds