Wall clock time and date at job start Thu Apr 9 2020 13:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47377 * 2 1 4 4 H 1.09006 * 109.46993 * 305.42787 * 3 2 1 5 5 C 1.50701 * 109.47251 * 185.42287 * 3 2 1 6 6 H 1.07993 * 119.99991 * 275.00769 * 5 3 2 7 7 C 1.37881 * 119.99774 * 95.01465 * 5 3 2 8 8 N 1.31509 * 119.99363 * 184.74527 * 7 5 3 9 9 Si 1.86799 * 119.99931 * 4.73895 * 7 5 3 10 10 H 1.48499 * 109.47136 * 85.09217 * 9 7 5 11 11 H 1.48505 * 109.46683 * 205.09063 * 9 7 5 12 12 H 1.48500 * 109.47595 * 325.08880 * 9 7 5 13 13 N 1.46499 * 109.46809 * 65.42324 * 3 2 1 14 14 C 1.34781 * 119.99778 * 275.00117 * 13 3 2 15 15 O 1.21582 * 120.00330 * 0.02562 * 14 13 3 16 16 N 1.34784 * 119.99646 * 179.97438 * 14 13 3 17 17 C 1.39938 * 119.99911 * 184.78122 * 16 14 13 18 18 C 1.38950 * 120.03354 * 332.04494 * 17 16 14 19 19 C 1.38146 * 120.07835 * 179.71785 * 18 17 16 20 20 C 1.38164 * 120.14138 * 0.55490 * 19 18 17 21 21 C 1.38946 * 120.06854 * 359.72334 * 20 19 18 22 22 N 1.39666 * 120.04551 * 180.02562 * 21 20 19 23 23 C 1.38705 * 120.03478 * 152.31922 * 17 16 14 24 24 C 1.50706 * 120.06865 * 0.02562 * 23 17 16 25 25 H 1.09000 * 109.47602 * 59.99432 * 1 2 3 26 26 H 1.09009 * 109.46789 * 299.99422 * 1 2 3 27 27 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47602 * 120.00568 * 2 1 3 29 29 H 1.08999 * 109.46761 * 240.00687 * 2 1 3 30 30 H 0.97006 * 119.99655 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00018 * 95.00465 * 13 3 2 32 32 H 0.97000 * 119.99772 * 4.78655 * 16 14 13 33 33 H 1.07999 * 119.95710 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.92461 * 180.28047 * 19 18 17 35 35 H 1.08006 * 119.96813 * 179.74300 * 20 19 18 36 36 H 0.97000 * 120.00481 * 179.97438 * 22 21 20 37 37 H 0.97007 * 119.99532 * 359.97438 * 22 21 20 38 38 H 1.08996 * 109.47197 * 90.00272 * 24 23 17 39 39 H 1.08995 * 109.47090 * 210.00338 * 24 23 17 40 40 H 1.09005 * 109.46911 * 330.00077 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9837 -0.8374 5 6 3.5411 1.4446 -0.1343 6 1 4.1618 1.3344 0.7426 7 6 4.1218 1.5873 -1.3766 8 7 5.4273 1.4958 -1.5065 9 14 3.0543 1.9105 -2.8751 10 1 2.7910 3.3674 -2.9903 11 1 3.7567 1.4364 -4.0946 12 1 1.7668 1.1846 -2.7316 13 7 1.6612 2.0943 1.2561 14 6 0.4447 2.6610 1.3811 15 8 -0.3385 2.6307 0.4516 16 7 0.0960 3.2602 2.5369 17 6 -1.2005 3.7601 2.7025 18 6 -1.9306 4.1795 1.5972 19 6 -3.2128 4.6677 1.7590 20 6 -3.7693 4.7513 3.0208 21 6 -3.0424 4.3389 4.1309 22 7 -3.6056 4.4231 5.4062 23 6 -1.7561 3.8426 3.9708 24 6 -0.9645 3.3949 5.1725 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8932 -0.5137 -0.8901 30 1 5.8359 1.5959 -2.3806 31 1 2.2859 2.1182 1.9978 32 1 0.7438 3.3450 3.2539 33 1 -1.4967 4.1200 0.6100 34 1 -3.7797 4.9888 0.8976 35 1 -4.7704 5.1373 3.1445 36 1 -3.0978 4.1347 6.1807 37 1 -4.5047 4.7701 5.5174 38 1 -0.3947 4.2364 5.5664 39 1 -1.6456 3.0264 5.9395 40 1 -0.2806 2.5978 4.8806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599608674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:48 Heat of formation + Delta-G solvation = -7.097907 kcal Electronic energy + Delta-G solvation = -21728.088735 eV Core-core repulsion = 18542.455356 eV Total energy + Delta-G solvation = -3185.633379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41517 -38.83985 -35.88233 -34.57844 -33.96751 -32.39477 -31.80362 -30.82904 -28.27496 -27.28846 -26.54710 -23.11351 -22.39148 -21.18847 -20.50072 -19.68633 -18.41252 -17.58888 -16.94465 -16.38489 -15.70895 -15.20469 -15.10794 -14.42560 -14.30589 -14.00213 -13.78526 -13.34888 -13.15795 -12.76839 -12.63553 -12.49604 -12.23508 -11.90136 -11.83535 -11.43467 -11.14102 -10.93719 -10.82564 -10.66665 -10.60339 -10.01642 -9.84228 -9.69394 -9.27103 -9.14232 -8.71289 -8.12490 -7.80367 -7.29912 -6.24682 -4.28472 1.55232 1.85335 3.12145 3.29212 3.35214 3.43090 3.68958 3.88389 4.14859 4.32522 4.78912 4.96371 5.02021 5.18482 5.26621 5.52803 5.60014 5.63181 5.81922 5.93080 6.09190 6.10874 6.13213 6.27796 6.37999 6.56757 6.60748 6.70171 6.82628 6.89637 6.99306 7.03761 7.21407 7.24829 7.36342 7.53297 7.56130 7.60693 7.70111 8.25267 8.67717 8.78024 9.16420 9.38053 10.86864 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.004371 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.231161 B = 6404.344978 C = 6676.495370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.253 3.747 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.874 3.126 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.714 5.714 14 C 0.692 3.308 15 O -0.576 6.576 16 N -0.690 5.690 17 C 0.225 3.775 18 C -0.183 4.183 19 C -0.060 4.060 20 C -0.224 4.224 21 C 0.230 3.770 22 N -0.881 5.881 23 C -0.207 4.207 24 C -0.101 4.101 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.268 0.732 31 H 0.389 0.611 32 H 0.402 0.598 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.394 0.606 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 5.065 12.978 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.150 3.850 4 H 0.070 0.930 5 C -0.569 4.569 6 H 0.096 0.904 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.336 5.336 17 C 0.127 3.873 18 C -0.205 4.205 19 C -0.079 4.079 20 C -0.247 4.247 21 C 0.126 3.874 22 N -0.422 5.422 23 C -0.215 4.215 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.237 0.763 33 H 0.169 0.831 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.224 0.776 37 H 0.223 0.777 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.181 4.942 11.870 19.894 hybrid contribution 0.028 0.223 0.277 0.357 sum -15.153 5.165 12.146 20.095 Atomic orbital electron populations 1.21885 0.97282 0.98700 1.02173 1.22085 0.93781 0.99468 1.01139 1.19092 0.95194 0.88804 0.81867 0.93011 1.21009 0.88657 1.51754 0.95467 0.90382 1.24933 0.94873 0.93592 0.98851 1.69881 1.09622 1.48217 1.24700 0.86897 0.81271 0.79675 0.82154 1.19836 1.21234 1.18214 1.45991 1.13163 1.58457 1.18998 1.16201 0.83604 0.78656 0.82267 1.90821 1.51244 1.64642 1.38697 1.42876 1.11986 1.60855 1.17930 1.17151 0.84182 0.93184 0.92763 1.21483 0.95621 1.03309 1.00123 1.20767 0.94687 0.96341 0.96116 1.20435 1.00758 1.11620 0.91935 1.17187 0.90999 0.93698 0.85533 1.42456 1.19543 1.74858 1.05338 1.18877 0.95232 1.13242 0.94184 1.20467 0.99251 1.00802 0.95296 0.93043 0.93116 0.95291 0.93109 0.92089 0.92208 0.77743 0.76300 0.83052 0.86263 0.86858 0.77639 0.77735 0.91985 0.92278 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.72 5.59 -26.73 -0.15 -2.87 16 3 C 0.25 5.89 1.89 -69.08 -0.13 5.76 16 4 H 0.05 1.32 4.73 -51.93 -0.25 1.08 16 5 C -0.53 -14.02 9.05 -34.44 -0.31 -14.33 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 9 Si 0.87 21.41 26.99 -169.99 -4.59 16.83 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.22 6.81 56.52 0.39 -5.84 16 13 N -0.71 -14.07 5.03 -59.81 -0.30 -14.37 16 14 C 0.69 13.29 7.03 -86.91 -0.61 12.68 16 15 O -0.58 -12.70 10.49 5.29 0.06 -12.65 16 16 N -0.69 -10.59 4.92 -14.24 -0.07 -10.66 16 17 C 0.23 3.48 6.40 -83.72 -0.54 2.94 16 18 C -0.18 -3.02 8.77 -39.35 -0.34 -3.36 16 19 C -0.06 -0.82 10.03 -39.64 -0.40 -1.22 16 20 C -0.22 -2.73 9.89 -39.35 -0.39 -3.12 16 21 C 0.23 2.73 6.73 -83.82 -0.56 2.16 16 22 N -0.88 -7.20 8.99 32.40 0.29 -6.91 16 23 C -0.21 -2.67 5.91 -104.24 -0.62 -3.29 16 24 C -0.10 -0.99 9.01 36.01 0.32 -0.66 16 25 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 26 H 0.05 1.04 5.63 -51.92 -0.29 0.75 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.39 6.71 8.61 -40.82 -0.35 6.36 16 32 H 0.40 4.94 7.54 -40.82 -0.31 4.63 16 33 H 0.15 2.87 5.66 -52.49 -0.30 2.57 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.39 2.65 6.82 -40.82 -0.28 2.37 16 37 H 0.39 2.45 8.84 -40.82 -0.36 2.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 40 H 0.06 0.64 7.04 -51.93 -0.37 0.27 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -31.40 320.04 -7.88 -39.28 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.36 Total: 14.51 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.51 Total: -5.73 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.69 Total: -57.07 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.06 Total: -12.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.59 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.40 -7.88 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599608674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.185 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds