Wall clock time and date at job start Thu Apr 9 2020 13:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.32374 * 2 1 4 4 C 1.54903 * 110.36439 * 122.23710 * 2 1 3 5 5 C 1.55157 * 101.58068 * 155.95914 * 4 2 1 6 6 H 1.09006 * 110.71864 * 83.04100 * 5 4 2 7 7 N 1.46504 * 110.71782 * 206.13309 * 5 4 2 8 8 C 1.36943 * 119.99781 * 205.00102 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31622 * 119.99400 * 179.72313 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 359.72086 * 10 8 7 13 13 H 1.48506 * 109.46719 * 90.00417 * 12 10 8 14 14 H 1.48501 * 109.46793 * 210.00071 * 12 10 8 15 15 H 1.48489 * 109.47333 * 330.00315 * 12 10 8 16 16 C 1.54321 * 102.94190 * 324.49837 * 5 4 2 17 17 N 1.47020 * 107.27051 * 22.19438 * 16 5 4 18 18 C 1.34781 * 125.64571 * 181.02599 * 17 16 5 19 19 O 1.21620 * 119.99700 * 180.02562 * 18 17 16 20 20 C 1.47259 * 119.99898 * 0.03721 * 18 17 16 21 21 C 1.46691 * 126.94665 * 359.68927 * 20 18 17 22 22 C 1.34487 * 106.33179 * 179.88871 * 21 20 18 23 23 N 1.36441 * 108.85750 * 0.37436 * 22 21 20 24 24 C 1.46500 * 124.85199 * 179.73399 * 23 22 21 25 25 C 1.34659 * 110.30002 * 359.74916 * 23 22 21 26 26 H 1.08998 * 109.47270 * 297.76483 * 1 2 3 27 27 H 1.09002 * 109.46903 * 57.76215 * 1 2 3 28 28 H 1.08995 * 109.46868 * 177.75859 * 1 2 3 29 29 H 1.08998 * 111.00847 * 37.88713 * 4 2 1 30 30 H 1.09004 * 111.00401 * 274.03263 * 4 2 1 31 31 H 0.97000 * 120.00410 * 25.00427 * 7 5 4 32 32 H 0.97009 * 119.99492 * 179.97438 * 11 10 8 33 33 H 1.09002 * 109.88174 * 141.61248 * 16 5 4 34 34 H 1.09006 * 109.87852 * 262.77475 * 16 5 4 35 35 H 1.08006 * 126.82767 * 0.02562 * 21 20 18 36 36 H 1.07996 * 125.56443 * 180.09082 * 22 21 20 37 37 H 1.09004 * 109.46720 * 270.02584 * 24 23 22 38 38 H 1.09004 * 109.46913 * 30.01586 * 24 23 22 39 39 H 1.08991 * 109.47544 * 150.02257 * 24 23 22 40 40 H 1.07994 * 125.80073 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7746 1.2283 5 6 3.4788 -1.1965 0.7364 6 1 4.1949 -0.3869 0.8778 7 7 3.9272 -2.4087 1.4262 8 6 5.2656 -2.6701 1.5511 9 1 5.9906 -1.9827 1.1408 10 6 5.6903 -3.8216 2.1996 11 7 6.9766 -4.0755 2.3149 12 14 4.4362 -5.0107 2.9087 13 1 4.0758 -6.0207 1.8813 14 1 5.0165 -5.6942 4.0925 15 1 3.2198 -4.2628 3.3157 16 6 3.2523 -1.4744 -0.7645 17 7 2.0454 -0.7379 -1.1675 18 6 1.5007 -0.7371 -2.4004 19 8 0.4964 -0.0876 -2.6210 20 6 2.1215 -1.5229 -3.4801 21 6 3.3291 -2.3504 -3.3861 22 6 3.5207 -2.8798 -4.6075 23 7 2.5345 -2.4368 -5.4398 24 6 2.4103 -2.7941 -6.8552 25 6 1.6918 -1.6240 -4.7746 26 1 -0.3634 0.4787 0.9093 27 1 -0.3633 0.5482 -0.8693 28 1 -0.3633 -1.0268 -0.0402 29 1 1.4522 -1.6477 1.4413 30 1 2.1379 -0.1247 2.1007 31 1 3.2760 -3.0263 1.7944 32 1 7.2735 -4.8800 2.7684 33 1 4.1095 -1.1245 -1.3398 34 1 3.1061 -2.5425 -0.9258 35 1 3.9411 -2.5054 -2.5098 36 1 4.3263 -3.5433 -4.8851 37 1 2.9591 -2.0732 -7.4613 38 1 2.8210 -3.7909 -7.0156 39 1 1.3588 -2.7839 -7.1416 40 1 0.8240 -1.1353 -5.1922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988607707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:07 Heat of formation + Delta-G solvation = 23.319412 kcal Electronic energy + Delta-G solvation = -21737.974409 eV Core-core repulsion = 18553.660024 eV Total energy + Delta-G solvation = -3184.314385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.19402 -40.81368 -38.56384 -36.01822 -34.08218 -33.46518 -32.38218 -30.50895 -30.08871 -27.47450 -26.75511 -25.59462 -23.89518 -22.12539 -21.81034 -20.89878 -19.93162 -19.59898 -18.02344 -17.62108 -16.99179 -16.41725 -16.28340 -15.98625 -15.50714 -15.11476 -14.90509 -14.60270 -14.51263 -14.34317 -13.89246 -13.64030 -13.42355 -13.20289 -13.18143 -13.02716 -12.94952 -12.87832 -12.79025 -12.20508 -12.14191 -11.92074 -11.80151 -11.52362 -11.01663 -10.61853 -9.67663 -9.50435 -9.34719 -9.21036 -7.99450 -5.34326 0.78844 1.42189 1.43654 1.50847 1.51262 1.90856 2.24831 2.51039 2.58881 3.30675 3.44971 3.72373 3.86549 4.00283 4.04698 4.07656 4.16378 4.28918 4.33938 4.45897 4.47754 4.51543 4.61730 4.74289 4.75780 4.83383 4.88274 5.02653 5.07677 5.14813 5.15470 5.31152 5.33466 5.61004 5.77136 5.80518 6.09413 6.24096 6.36735 6.65293 7.08802 7.32426 7.83125 8.02495 9.21461 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.005508 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.095615 B = 5082.519448 C = 6418.719298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.166 3.834 6 H 0.072 0.928 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.064 0.936 10 C -0.055 4.055 11 N -0.980 5.980 12 Si 0.947 3.053 13 H -0.281 1.281 14 H -0.298 1.298 15 H -0.251 1.251 16 C 0.093 3.907 17 N -0.608 5.608 18 C 0.599 3.401 19 O -0.587 6.587 20 C -0.268 4.268 21 C -0.200 4.200 22 C -0.014 4.014 23 N -0.442 5.442 24 C 0.062 3.938 25 C 0.075 3.925 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.367 0.633 32 H 0.257 0.743 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.145 0.855 36 H 0.194 0.806 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.225 4.010 -15.740 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.100 0.900 4 C -0.166 4.166 5 C 0.057 3.943 6 H 0.090 0.910 7 N -0.381 5.381 8 C -0.362 4.362 9 H 0.082 0.918 10 C -0.247 4.247 11 N -0.631 5.631 12 Si 0.775 3.225 13 H -0.208 1.208 14 H -0.225 1.225 15 H -0.175 1.175 16 C -0.033 4.033 17 N -0.340 5.340 18 C 0.392 3.608 19 O -0.471 6.471 20 C -0.278 4.278 21 C -0.223 4.223 22 C -0.141 4.141 23 N -0.116 5.116 24 C -0.078 4.078 25 C -0.062 4.062 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.201 0.799 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.211 0.789 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.525 4.253 -16.283 20.979 hybrid contribution 0.013 -1.013 0.659 1.209 sum -12.512 3.240 -15.623 20.276 Atomic orbital electron populations 1.22010 0.93481 1.01879 1.03275 1.21973 0.95422 0.95640 0.83857 0.89964 1.23130 0.95282 1.00742 0.97442 1.21372 0.95046 0.88779 0.89146 0.90972 1.42668 1.03357 1.24708 1.67334 1.19050 0.83286 1.04475 1.29368 0.91835 1.25393 0.97294 1.00163 1.01880 1.69874 1.14880 1.28495 1.49809 0.85527 0.79650 0.79520 0.77801 1.20782 1.22473 1.17550 1.23053 0.86116 0.96035 0.98083 1.48379 1.28249 1.48312 1.09082 1.17366 0.82388 0.80001 0.81069 1.90637 1.26949 1.46696 1.82803 1.20431 1.02496 1.10038 0.94825 1.22753 0.98644 1.02019 0.98885 1.22201 0.96593 1.05246 0.90020 1.43935 1.20751 1.35605 1.11305 1.22464 1.05614 1.03671 0.76049 1.21928 0.96928 0.96262 0.91105 0.89791 0.91603 0.93925 0.90788 0.87912 0.79896 0.93374 0.91970 0.91900 0.83791 0.78911 0.89259 0.87798 0.88056 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 8.60 71.98 0.62 -3.45 16 2 C 0.13 3.90 3.76 45.47 0.17 4.07 16 3 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.13 -3.70 6.13 31.98 0.20 -3.51 16 5 C 0.17 6.02 3.61 46.18 0.17 6.18 16 6 H 0.07 2.67 8.09 -2.38 -0.02 2.66 16 7 N -0.74 -32.64 4.95 -317.31 -1.57 -34.21 16 8 C -0.23 -12.51 10.44 84.03 0.88 -11.64 16 9 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 10 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 11 N -0.98 -61.11 13.97 21.65 0.30 -60.81 16 12 Si 0.95 44.21 27.73 68.60 1.90 46.11 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 15 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 16 C 0.09 3.25 4.74 86.73 0.41 3.66 16 17 N -0.61 -20.33 3.24 -792.19 -2.57 -22.90 16 18 C 0.60 21.17 7.62 86.61 0.66 21.83 16 19 O -0.59 -22.50 14.64 -4.09 -0.06 -22.56 16 20 C -0.27 -8.43 6.23 -19.04 -0.12 -8.55 16 21 C -0.20 -5.96 9.39 23.62 0.22 -5.74 16 22 C -0.01 -0.31 11.34 83.12 0.94 0.63 16 23 N -0.44 -8.56 3.09 -547.91 -1.69 -10.25 16 24 C 0.06 0.53 11.03 127.77 1.41 1.94 16 25 C 0.08 1.85 11.12 83.92 0.93 2.78 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.05 6.09 -2.39 -0.01 2.03 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 30 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.37 15.76 5.62 -92.71 -0.52 15.24 16 32 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 33 H 0.06 2.21 6.99 -2.39 -0.02 2.19 16 34 H 0.06 2.37 6.74 -2.38 -0.02 2.35 16 35 H 0.14 4.70 4.80 -2.91 -0.01 4.69 16 36 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.10 0.55 8.13 -2.39 -0.02 0.53 16 39 H 0.10 0.56 8.13 -2.39 -0.02 0.54 16 40 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -72.43 323.59 3.73 -68.69 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.47 Total: 30.40 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.96 Total: 5.52 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -5.53 Total: -128.16 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.90 Total: 46.11 kcal Total: -72.43 3.73 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988607707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.013 kcal (2) G-P(sol) polarization free energy of solvation -72.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds