Wall clock time and date at job start Thu Apr 9 2020 13:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.58361 * 2 1 4 4 C 1.53190 * 109.58558 * 120.28352 * 2 1 3 5 5 H 1.09005 * 109.51965 * 294.53547 * 4 2 1 6 6 N 1.46494 * 109.49749 * 54.61119 * 4 2 1 7 7 C 1.34777 * 120.00049 * 204.83530 * 6 4 2 8 8 O 1.21628 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.47264 * 119.99921 * 180.02562 * 7 6 4 10 10 C 1.46687 * 126.94343 * 359.69013 * 9 7 6 11 11 C 1.34486 * 106.33131 * 179.83193 * 10 9 7 12 12 N 1.36447 * 108.85666 * 0.43075 * 11 10 9 13 13 H 0.97006 * 124.85091 * 179.73738 * 12 11 10 14 14 C 1.34657 * 110.29845 * 359.71780 * 12 11 10 15 15 C 1.53036 * 109.31361 * 174.56807 * 4 2 1 16 16 C 1.53047 * 109.52369 * 298.63975 * 15 4 2 17 17 C 1.53162 * 109.32569 * 61.37577 * 16 15 4 18 18 N 1.46921 * 109.70358 * 239.64571 * 2 1 3 19 19 C 1.36936 * 120.63215 * 6.50706 * 18 2 1 20 20 H 1.07997 * 120.00178 * 330.20749 * 19 18 2 21 21 C 1.38814 * 119.99902 * 150.20057 * 19 18 2 22 22 N 1.31627 * 119.99987 * 344.47779 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.47171 * 21 19 18 24 24 H 1.48489 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46874 * 120.00550 * 23 21 19 26 26 H 1.48499 * 109.47144 * 240.00045 * 23 21 19 27 27 H 1.08999 * 109.47280 * 299.71882 * 1 2 3 28 28 H 1.09004 * 109.46693 * 59.72184 * 1 2 3 29 29 H 1.08997 * 109.46811 * 179.71639 * 1 2 3 30 30 H 0.97003 * 120.00330 * 24.84211 * 6 4 2 31 31 H 1.07994 * 126.83484 * 359.97438 * 10 9 7 32 32 H 1.08007 * 125.57181 * 180.14529 * 11 10 9 33 33 H 1.08002 * 125.79889 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.45964 * 58.65175 * 15 4 2 35 35 H 1.08998 * 109.46245 * 178.62855 * 15 4 2 36 36 H 1.08999 * 109.49388 * 181.31090 * 16 15 4 37 37 H 1.08999 * 109.49492 * 301.40638 * 16 15 4 38 38 H 1.09005 * 109.58803 * 185.57516 * 17 16 15 39 39 H 1.08998 * 109.71367 * 65.20487 * 17 16 15 40 40 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7637 -0.1659 2.1375 6 7 1.4540 -2.0675 1.3079 7 6 1.3339 -2.6970 2.4935 8 8 1.7146 -2.1527 3.5124 9 6 0.7418 -4.0440 2.5553 10 6 0.2300 -4.8345 1.4307 11 6 -0.2092 -5.9937 1.9521 12 7 -0.0162 -5.9709 3.3027 13 1 -0.2543 -6.6899 3.9089 14 6 0.5524 -4.8081 3.6738 15 6 3.5678 -0.8433 1.1730 16 6 3.9601 -1.6607 -0.0600 17 6 3.4686 -0.9435 -1.3210 18 7 2.0254 -0.6990 -1.1936 19 6 1.1585 -1.1152 -2.1685 20 1 0.1448 -1.3840 -1.9108 21 6 1.5827 -1.1914 -3.4880 22 7 2.6925 -0.5883 -3.8584 23 14 0.5787 -2.1500 -4.7379 24 1 -0.6161 -2.7295 -4.0735 25 1 0.1454 -1.2393 -5.8281 26 1 1.4084 -3.2427 -5.3062 27 1 -0.3634 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8875 29 1 -0.3633 -1.0276 -0.0051 30 1 1.1502 -2.5015 0.4954 31 1 0.2119 -4.5444 0.3906 32 1 -0.6477 -6.8077 1.3938 33 1 0.8148 -4.5269 4.6830 34 1 4.0045 0.1529 1.1022 35 1 3.9381 -1.3392 2.0702 36 1 5.0446 -1.7624 -0.0991 37 1 3.5034 -2.6487 -0.0019 38 1 3.6576 -1.5684 -2.1939 39 1 3.9918 0.0063 -1.4312 40 1 2.9890 -0.6420 -4.7804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993362767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:28 Heat of formation + Delta-G solvation = 26.850803 kcal Electronic energy + Delta-G solvation = -22469.220556 eV Core-core repulsion = 19285.059304 eV Total energy + Delta-G solvation = -3184.161252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99366 -39.20642 -37.24755 -33.77901 -32.35311 -31.71151 -30.79463 -29.28041 -28.88527 -26.19908 -24.95541 -23.15295 -21.56511 -20.67465 -20.57875 -19.27781 -18.67135 -18.50749 -16.34645 -15.83045 -15.24211 -14.77047 -14.72893 -14.03137 -13.83310 -13.80105 -13.54881 -13.16052 -12.94651 -12.89497 -12.83927 -12.47119 -11.95083 -11.75567 -11.19283 -11.14126 -10.94847 -10.65747 -10.53568 -10.43543 -10.04972 -9.94168 -9.58243 -9.39090 -9.21908 -8.79316 -8.47914 -8.39651 -8.16497 -6.61719 -5.77537 -3.22447 1.97927 2.52455 3.19047 3.36064 3.44271 3.45520 3.97599 4.01832 4.48401 4.98788 5.14649 5.35360 5.38266 5.43356 5.56242 5.68574 5.72740 5.85590 5.93450 6.06236 6.18147 6.23173 6.31837 6.44743 6.52367 6.62178 6.76573 6.78754 6.80185 6.87551 6.94893 7.02574 7.06991 7.28929 7.43240 7.45000 7.71486 7.82384 8.29906 8.46519 8.90268 9.22426 9.85640 10.43611 11.30475 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.006385 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.518982 B = 4384.101050 C = 5327.718741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.135 3.865 5 H 0.074 0.926 6 N -0.695 5.695 7 C 0.584 3.416 8 O -0.571 6.571 9 C -0.225 4.225 10 C -0.164 4.164 11 C -0.024 4.024 12 N -0.558 5.558 13 H 0.414 0.586 14 C 0.064 3.936 15 C -0.121 4.121 16 C -0.140 4.140 17 C 0.172 3.828 18 N -0.585 5.585 19 C -0.252 4.252 20 H 0.070 0.930 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.290 1.290 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.408 0.592 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -8.984 11.396 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.056 0.944 4 C 0.029 3.971 5 H 0.092 0.908 6 N -0.345 5.345 7 C 0.372 3.628 8 O -0.453 6.453 9 C -0.236 4.236 10 C -0.188 4.188 11 C -0.152 4.152 12 N -0.153 5.153 13 H 0.250 0.750 14 C -0.072 4.072 15 C -0.159 4.159 16 C -0.179 4.179 17 C 0.046 3.954 18 N -0.309 5.309 19 C -0.382 4.382 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.217 1.217 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.245 0.755 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.036 0.964 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.872 -8.669 11.947 15.260 hybrid contribution -0.601 -1.018 -0.966 1.526 sum -4.473 -9.686 10.981 15.311 Atomic orbital electron populations 1.21776 0.95667 1.01532 1.00296 1.20726 0.93334 0.93887 0.86867 0.94425 1.21489 0.92821 0.83274 0.99556 0.90752 1.45779 1.61498 1.18155 1.09026 1.17397 0.77799 0.84087 0.83562 1.90706 1.52142 1.67747 1.34705 1.20545 1.12403 0.96899 0.93718 1.22220 1.03750 0.94108 0.98726 1.21755 1.09105 1.01235 0.83078 1.41606 1.49421 1.15996 1.08248 0.74964 1.21774 0.99773 0.86155 0.99461 1.21768 0.95688 1.00257 0.98212 1.22128 0.98784 0.99701 0.97285 1.20776 0.83198 0.97113 0.94278 1.44145 1.03039 1.64912 1.18817 1.19193 0.95242 1.37630 0.86127 0.91196 1.25100 0.97827 0.99495 0.96973 1.70042 1.24092 1.43664 1.16610 0.86293 0.79605 0.79616 0.81655 1.20226 1.21870 1.21708 0.94234 0.91916 0.92693 0.75524 0.83399 0.81587 0.80884 0.92100 0.93141 0.93618 0.92729 0.89742 0.96448 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.73 37.16 0.29 -2.25 16 2 C 0.16 3.24 3.19 -67.60 -0.22 3.02 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.14 2.54 2.32 -67.82 -0.16 2.39 16 5 H 0.07 1.41 7.58 -51.93 -0.39 1.02 16 6 N -0.69 -12.60 3.47 -54.82 -0.19 -12.79 16 7 C 0.58 10.62 7.77 -12.59 -0.10 10.53 16 8 O -0.57 -11.81 16.58 5.25 0.09 -11.73 16 9 C -0.23 -3.45 6.29 -103.35 -0.65 -4.10 16 10 C -0.16 -2.21 10.56 -37.50 -0.40 -2.61 16 11 C -0.02 -0.25 11.89 -16.82 -0.20 -0.45 16 12 N -0.56 -5.08 5.90 -12.84 -0.08 -5.15 16 13 H 0.41 2.15 8.96 -40.82 -0.37 1.79 16 14 C 0.06 0.78 11.69 -16.84 -0.20 0.59 16 15 C -0.12 -2.25 5.58 -26.69 -0.15 -2.40 16 16 C -0.14 -2.75 5.93 -26.62 -0.16 -2.91 16 17 C 0.17 4.00 5.28 -3.72 -0.02 3.98 16 18 N -0.59 -13.67 2.64 -164.79 -0.44 -14.10 16 19 C -0.25 -6.38 8.59 -15.06 -0.13 -6.51 16 20 H 0.07 1.72 6.24 -52.49 -0.33 1.39 16 21 C 0.01 0.13 4.94 -17.43 -0.09 0.05 16 22 N -0.90 -25.32 11.23 55.49 0.62 -24.70 16 23 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 29 H 0.05 1.03 6.38 -51.93 -0.33 0.69 16 30 H 0.41 7.55 6.90 -40.82 -0.28 7.27 16 31 H 0.15 2.00 7.69 -52.49 -0.40 1.60 16 32 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 1.10 7.53 -51.93 -0.39 0.71 16 38 H 0.08 2.20 6.14 -51.93 -0.32 1.88 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 320.87 15.07 4.84 4.84 Total: -1.00 -31.01 320.87 -8.08 -39.09 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.73 Total: 9.37 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.17 Total: -0.68 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.08 Total: -56.74 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.01 -8.08 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.943 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds