Wall clock time and date at job start Thu Apr 9 2020 13:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.58361 * 2 1 4 4 C 1.53190 * 109.58558 * 120.28352 * 2 1 3 5 5 H 1.09005 * 109.51965 * 294.53547 * 4 2 1 6 6 N 1.46494 * 109.49749 * 54.61119 * 4 2 1 7 7 C 1.34777 * 120.00049 * 204.83530 * 6 4 2 8 8 O 1.21628 * 120.00138 * 0.02562 * 7 6 4 9 9 C 1.47264 * 119.99921 * 180.02562 * 7 6 4 10 10 C 1.46687 * 126.94343 * 359.69013 * 9 7 6 11 11 C 1.34486 * 106.33131 * 179.83193 * 10 9 7 12 12 N 1.36447 * 108.85666 * 0.43075 * 11 10 9 13 13 H 0.97006 * 124.85091 * 179.73738 * 12 11 10 14 14 C 1.34657 * 110.29845 * 359.71780 * 12 11 10 15 15 C 1.53036 * 109.31361 * 174.56807 * 4 2 1 16 16 C 1.53047 * 109.52369 * 298.63975 * 15 4 2 17 17 C 1.53162 * 109.32569 * 61.37577 * 16 15 4 18 18 N 1.46921 * 109.70358 * 239.64571 * 2 1 3 19 19 C 1.36936 * 120.63215 * 6.50706 * 18 2 1 20 20 H 1.07997 * 120.00178 * 330.20749 * 19 18 2 21 21 C 1.38814 * 119.99902 * 150.20057 * 19 18 2 22 22 N 1.31627 * 119.99987 * 344.47779 * 21 19 18 23 23 Si 1.86799 * 119.99883 * 164.47171 * 21 19 18 24 24 H 1.48489 * 109.47406 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46874 * 120.00550 * 23 21 19 26 26 H 1.48499 * 109.47144 * 240.00045 * 23 21 19 27 27 H 1.08999 * 109.47280 * 299.71882 * 1 2 3 28 28 H 1.09004 * 109.46693 * 59.72184 * 1 2 3 29 29 H 1.08997 * 109.46811 * 179.71639 * 1 2 3 30 30 H 0.97003 * 120.00330 * 24.84211 * 6 4 2 31 31 H 1.07994 * 126.83484 * 359.97438 * 10 9 7 32 32 H 1.08007 * 125.57181 * 180.14529 * 11 10 9 33 33 H 1.08002 * 125.79889 * 180.02562 * 14 12 11 34 34 H 1.08999 * 109.45964 * 58.65175 * 15 4 2 35 35 H 1.08998 * 109.46245 * 178.62855 * 15 4 2 36 36 H 1.08999 * 109.49388 * 181.31090 * 16 15 4 37 37 H 1.08999 * 109.49492 * 301.40638 * 16 15 4 38 38 H 1.09005 * 109.58803 * 185.57516 * 17 16 15 39 39 H 1.08998 * 109.71367 * 65.20487 * 17 16 15 40 40 H 0.96996 * 119.99377 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 1 1.7637 -0.1659 2.1375 6 7 1.4540 -2.0675 1.3079 7 6 1.3339 -2.6970 2.4935 8 8 1.7146 -2.1527 3.5124 9 6 0.7418 -4.0440 2.5553 10 6 0.2300 -4.8345 1.4307 11 6 -0.2092 -5.9937 1.9521 12 7 -0.0162 -5.9709 3.3027 13 1 -0.2543 -6.6899 3.9089 14 6 0.5524 -4.8081 3.6738 15 6 3.5678 -0.8433 1.1730 16 6 3.9601 -1.6607 -0.0600 17 6 3.4686 -0.9435 -1.3210 18 7 2.0254 -0.6990 -1.1936 19 6 1.1585 -1.1152 -2.1685 20 1 0.1448 -1.3840 -1.9108 21 6 1.5827 -1.1914 -3.4880 22 7 2.6925 -0.5883 -3.8584 23 14 0.5787 -2.1500 -4.7379 24 1 -0.6161 -2.7295 -4.0735 25 1 0.1454 -1.2393 -5.8281 26 1 1.4084 -3.2427 -5.3062 27 1 -0.3634 0.5094 0.8925 28 1 -0.3633 0.5182 -0.8875 29 1 -0.3633 -1.0276 -0.0051 30 1 1.1502 -2.5015 0.4954 31 1 0.2119 -4.5444 0.3906 32 1 -0.6477 -6.8077 1.3938 33 1 0.8148 -4.5269 4.6830 34 1 4.0045 0.1529 1.1022 35 1 3.9381 -1.3392 2.0702 36 1 5.0446 -1.7624 -0.0991 37 1 3.5034 -2.6487 -0.0019 38 1 3.6576 -1.5684 -2.1939 39 1 3.9918 0.0063 -1.4312 40 1 2.9890 -0.6420 -4.7804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993362767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:28 Heat of formation + Delta-G solvation = 7.518231 kcal Electronic energy + Delta-G solvation = -22470.058879 eV Core-core repulsion = 19285.059304 eV Total energy + Delta-G solvation = -3184.999576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94789 -40.68020 -38.83151 -35.51090 -33.99080 -33.37648 -32.03226 -30.76929 -29.92510 -27.85836 -26.81220 -24.54375 -23.20104 -22.32774 -21.51290 -20.55774 -20.12593 -19.58223 -18.20997 -17.18898 -16.90520 -16.41295 -16.12369 -15.65055 -15.26548 -15.06256 -14.76180 -14.60605 -14.43793 -14.33886 -14.15295 -13.83833 -13.52871 -12.96825 -12.90534 -12.86008 -12.69995 -12.41447 -12.27890 -12.14034 -11.87128 -11.64705 -11.33131 -10.99672 -10.81529 -10.47552 -9.93135 -9.60881 -9.21732 -8.56869 -7.78341 -5.24929 0.89193 1.50521 1.53654 1.60875 1.62395 2.31793 2.56531 2.71008 2.74596 3.37871 3.62543 3.99987 4.12002 4.13847 4.24473 4.29804 4.42846 4.45139 4.59339 4.61194 4.69860 4.81273 4.97829 5.01966 5.04483 5.07472 5.15766 5.23373 5.26866 5.37792 5.48658 5.58655 5.73620 5.78797 5.81469 5.84499 6.02895 6.47974 6.73371 6.89217 7.22875 7.50122 7.92733 8.47020 9.28553 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.006385 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.518982 B = 4384.101050 C = 5327.718741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.156 3.844 3 H 0.031 0.969 4 C 0.143 3.857 5 H 0.076 0.924 6 N -0.694 5.694 7 C 0.581 3.419 8 O -0.603 6.603 9 C -0.269 4.269 10 C -0.195 4.195 11 C -0.002 4.002 12 N -0.536 5.536 13 H 0.437 0.563 14 C 0.077 3.923 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.181 3.819 18 N -0.595 5.595 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.959 3.041 24 H -0.261 1.261 25 H -0.300 1.300 26 H -0.296 1.296 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.406 0.594 31 H 0.138 0.862 32 H 0.204 0.796 33 H 0.188 0.812 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.054 0.946 39 H -0.004 1.004 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 -11.059 12.892 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.049 0.951 4 C 0.036 3.964 5 H 0.094 0.906 6 N -0.343 5.343 7 C 0.372 3.628 8 O -0.487 6.487 9 C -0.279 4.279 10 C -0.219 4.219 11 C -0.130 4.130 12 N -0.132 5.132 13 H 0.277 0.723 14 C -0.062 4.062 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.055 3.945 18 N -0.319 5.319 19 C -0.374 4.374 20 H 0.096 0.904 21 C -0.245 4.245 22 N -0.583 5.583 23 Si 0.788 3.212 24 H -0.185 1.185 25 H -0.228 1.228 26 H -0.223 1.223 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.156 0.844 32 H 0.221 0.779 33 H 0.205 0.795 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.014 0.986 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.353 -10.782 13.480 18.073 hybrid contribution -0.177 -0.398 -1.349 1.417 sum -5.529 -11.180 12.131 17.399 Atomic orbital electron populations 1.21681 0.94280 1.01626 1.00758 1.20845 0.94500 0.93413 0.86253 0.95112 1.21295 0.92844 0.83787 0.98455 0.90569 1.45729 1.61605 1.17762 1.09185 1.17837 0.77157 0.85046 0.82776 1.90672 1.53740 1.68830 1.35456 1.20489 1.15171 0.96393 0.95821 1.22255 1.05877 0.95542 0.98244 1.22232 1.06669 1.00734 0.83378 1.41613 1.47563 1.15597 1.08394 0.72272 1.21959 0.98502 0.86418 0.99293 1.21715 0.95711 1.00401 0.97498 1.21933 0.99592 0.98991 0.95882 1.20553 0.83394 0.95745 0.94826 1.44308 1.02872 1.65396 1.19298 1.19507 0.95600 1.35954 0.86380 0.90386 1.25787 0.99004 1.00919 0.98806 1.70196 1.25965 1.45701 1.16454 0.85326 0.78695 0.77938 0.79228 1.18480 1.22792 1.22292 0.91909 0.93285 0.92699 0.75764 0.84369 0.77936 0.79459 0.91451 0.92868 0.92057 0.93162 0.92743 0.98622 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.73 71.98 0.56 -4.06 16 2 C 0.16 6.34 3.19 44.98 0.14 6.48 16 3 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.14 5.31 2.32 45.07 0.10 5.41 16 5 H 0.08 2.84 7.58 -2.38 -0.02 2.82 16 6 N -0.69 -24.88 3.47 -445.59 -1.54 -26.43 16 7 C 0.58 20.85 7.77 86.62 0.67 21.52 16 8 O -0.60 -24.61 16.58 -4.12 -0.07 -24.68 16 9 C -0.27 -7.86 6.29 -19.04 -0.12 -7.98 16 10 C -0.20 -4.95 10.56 23.62 0.25 -4.70 16 11 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 12 N -0.54 -7.69 5.90 -194.55 -1.15 -8.83 16 13 H 0.44 2.53 8.96 -92.70 -0.83 1.70 16 14 C 0.08 1.66 11.69 83.92 0.98 2.64 16 15 C -0.11 -4.21 5.58 30.62 0.17 -4.04 16 16 C -0.12 -4.91 5.93 30.66 0.18 -4.73 16 17 C 0.18 8.59 5.28 86.35 0.46 9.05 16 18 N -0.59 -28.08 2.64 -675.27 -1.78 -29.86 16 19 C -0.24 -12.40 8.59 84.03 0.72 -11.68 16 20 H 0.08 3.79 6.24 -2.91 -0.02 3.77 16 21 C -0.05 -2.68 4.94 84.86 0.42 -2.26 16 22 N -0.94 -54.20 11.23 21.65 0.24 -53.96 16 23 Si 0.96 43.33 29.58 68.60 2.03 45.36 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.91 7.67 -2.39 -0.02 1.89 16 29 H 0.05 2.00 6.38 -2.39 -0.02 1.98 16 30 H 0.41 14.96 6.90 -92.71 -0.64 14.32 16 31 H 0.14 3.66 7.69 -2.91 -0.02 3.64 16 32 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 2.02 7.53 -2.39 -0.02 2.00 16 38 H 0.05 2.93 6.14 -2.38 -0.01 2.91 16 39 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -67.82 320.87 2.84 -64.97 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.41 Total: 26.79 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.53 Total: 6.63 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -4.23 Total: -119.08 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.07 Total: -24.68 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -67.82 2.84 -64.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.492 kcal (2) G-P(sol) polarization free energy of solvation -67.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds