Wall clock time and date at job start Thu Apr 9 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58180 * 2 1 4 4 C 1.53190 * 109.58822 * 239.57096 * 2 1 3 5 5 H 1.08998 * 109.49304 * 305.52876 * 4 2 1 6 6 N 1.46498 * 109.49965 * 65.62037 * 4 2 1 7 7 C 1.34773 * 120.00329 * 204.99978 * 6 4 2 8 8 O 1.21625 * 120.00015 * 0.02562 * 7 6 4 9 9 C 1.47265 * 120.00160 * 179.97438 * 7 6 4 10 10 C 1.46685 * 126.94007 * 359.68990 * 9 7 6 11 11 C 1.34484 * 106.33117 * 179.88801 * 10 9 7 12 12 N 1.36451 * 108.85882 * 0.37377 * 11 10 9 13 13 H 0.96994 * 124.85641 * 179.73173 * 12 11 10 14 14 C 1.34659 * 110.29230 * 359.75007 * 12 11 10 15 15 C 1.53036 * 109.31413 * 185.57471 * 4 2 1 16 16 C 1.53045 * 109.53891 * 61.36269 * 15 4 2 17 17 C 1.53196 * 109.31092 * 298.63935 * 16 15 4 18 18 N 1.46923 * 109.58650 * 120.27720 * 2 1 3 19 19 C 1.36935 * 120.63511 * 353.37481 * 18 2 1 20 20 H 1.08002 * 119.99539 * 29.03172 * 19 18 2 21 21 C 1.38814 * 120.00426 * 209.03420 * 19 18 2 22 22 N 1.31612 * 119.99931 * 15.02171 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 195.02366 * 21 19 18 24 24 H 1.48501 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47119 * 119.99713 * 23 21 19 26 26 H 1.48497 * 109.46922 * 239.99906 * 23 21 19 27 27 H 1.09001 * 109.47119 * 299.72046 * 1 2 3 28 28 H 1.08997 * 109.47533 * 59.72113 * 1 2 3 29 29 H 1.09002 * 109.46826 * 179.72439 * 1 2 3 30 30 H 0.97009 * 119.99478 * 25.00454 * 6 4 2 31 31 H 1.07999 * 126.83704 * 0.02562 * 10 9 7 32 32 H 1.08004 * 125.57486 * 180.08859 * 11 10 9 33 33 H 1.08004 * 125.80061 * 179.97438 * 14 12 11 34 34 H 1.08998 * 109.45801 * 301.34685 * 15 4 2 35 35 H 1.08999 * 109.45969 * 181.38148 * 15 4 2 36 36 H 1.08995 * 109.50047 * 178.68742 * 16 15 4 37 37 H 1.09006 * 109.49321 * 58.58369 * 16 15 4 38 38 H 1.09007 * 109.58386 * 174.42345 * 17 16 15 39 39 H 1.09004 * 109.58479 * 294.84261 * 17 16 15 40 40 H 0.97000 * 120.00190 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2445 5 1 1.6030 -1.7269 -1.2890 6 7 1.6705 0.0235 -2.4435 7 6 1.5472 -0.6096 -3.6269 8 8 1.7452 -1.8075 -3.6993 9 6 1.1716 0.1487 -4.8321 10 6 0.8918 1.5861 -4.9177 11 6 0.5954 1.8376 -6.2051 12 7 0.6633 0.6709 -6.9094 13 1 0.4883 0.5861 -7.8597 14 6 1.0075 -0.3460 -6.0966 15 6 3.5675 -0.8494 -1.1691 16 6 3.9570 -1.6655 0.0657 17 6 3.4650 -0.9450 1.3250 18 7 2.0225 -0.6979 1.1954 19 6 1.1538 -1.1098 2.1705 20 1 0.1360 -1.3646 1.9143 21 6 1.5812 -1.1997 3.4881 22 7 2.7044 -0.6210 3.8566 23 14 0.5623 -2.1422 4.7383 24 1 -0.6461 -2.6956 4.0759 25 1 1.3715 -3.2539 5.2993 26 1 0.1519 -1.2270 5.8333 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0049 30 1 1.5123 0.9788 -2.3857 31 1 0.9206 2.3006 -4.1084 32 1 0.3404 2.8042 -6.6138 33 1 1.1323 -1.3771 -6.3927 34 1 4.0060 0.1461 -1.0995 35 1 3.9378 -1.3474 -2.0651 36 1 5.0413 -1.7692 0.1061 37 1 3.4984 -2.6527 0.0087 38 1 3.6519 -1.5687 2.1993 39 1 3.9903 0.0041 1.4317 40 1 3.0029 -0.6835 4.7774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993362768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:30 Heat of formation + Delta-G solvation = 26.082016 kcal Electronic energy + Delta-G solvation = -21851.621140 eV Core-core repulsion = 18667.426550 eV Total energy + Delta-G solvation = -3184.194589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16296 -39.17988 -37.34525 -34.12825 -32.51325 -31.70282 -30.97588 -29.32554 -28.85103 -26.15031 -24.95389 -23.27165 -21.36627 -20.81312 -20.51776 -19.61528 -19.12882 -18.59192 -16.32756 -15.86361 -15.53464 -14.87204 -14.73249 -13.98555 -13.95914 -13.78410 -13.64832 -13.36844 -13.19724 -13.11118 -12.65839 -12.44310 -12.14336 -11.59873 -11.45993 -11.02257 -10.86653 -10.69648 -10.46815 -10.19605 -10.03600 -9.95852 -9.79134 -9.48516 -9.25785 -8.97472 -8.57939 -8.44403 -8.31695 -6.61071 -5.73974 -3.17894 1.82642 2.32728 3.02699 3.40630 3.48607 3.50753 3.76511 3.82469 4.54529 4.79992 5.00608 5.17121 5.35403 5.38179 5.48419 5.62054 5.71259 5.74348 5.90227 5.97861 6.07481 6.20329 6.31637 6.44720 6.51431 6.59557 6.64242 6.74599 6.76238 6.83758 6.87710 6.98170 7.08397 7.19474 7.27056 7.48092 7.74418 7.87164 8.03021 8.49839 8.72124 9.26051 9.88939 10.45411 11.34602 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004082 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.776501 B = 6857.942538 C = 7158.969425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.027 0.973 4 C 0.133 3.867 5 H 0.085 0.915 6 N -0.713 5.713 7 C 0.586 3.414 8 O -0.558 6.558 9 C -0.227 4.227 10 C -0.169 4.169 11 C -0.022 4.022 12 N -0.557 5.557 13 H 0.416 0.584 14 C 0.068 3.932 15 C -0.117 4.117 16 C -0.140 4.140 17 C 0.169 3.831 18 N -0.583 5.583 19 C -0.249 4.249 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.395 0.605 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.018 0.982 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 5.428 -19.435 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.045 0.955 4 C 0.027 3.973 5 H 0.103 0.897 6 N -0.362 5.362 7 C 0.374 3.626 8 O -0.438 6.438 9 C -0.237 4.237 10 C -0.194 4.194 11 C -0.149 4.149 12 N -0.152 5.152 13 H 0.252 0.748 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.180 4.180 17 C 0.044 3.956 18 N -0.306 5.306 19 C -0.378 4.378 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.163 0.837 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.036 0.964 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.481 4.597 -19.393 20.085 hybrid contribution -0.530 0.079 0.283 0.606 sum -3.012 4.676 -19.110 19.903 Atomic orbital electron populations 1.21817 0.95713 1.01637 1.00228 1.20566 0.93228 0.93552 0.86685 0.95539 1.21725 0.94933 0.96865 0.83781 0.89696 1.45905 1.70134 1.12019 1.08159 1.17367 0.76437 0.86356 0.82455 1.90755 1.52207 1.14776 1.86017 1.20544 1.15232 0.94151 0.93788 1.22110 1.06415 0.94499 0.96327 1.21757 1.10116 0.90450 0.92612 1.41628 1.54995 1.07487 1.11063 0.74801 1.21833 1.01466 0.93596 0.89880 1.21763 0.95592 0.99949 0.98230 1.22188 0.99123 0.99742 0.96955 1.20850 0.83067 0.97168 0.94533 1.44051 1.03170 1.65238 1.18165 1.19238 0.94827 1.37617 0.86153 0.91128 1.25064 0.97830 0.99768 0.96918 1.70029 1.23341 1.44689 1.16736 0.86239 0.79699 0.79512 0.81438 1.20238 1.21614 1.21802 0.91861 0.94193 0.92740 0.77136 0.83689 0.81546 0.80705 0.92861 0.93201 0.93109 0.92559 0.89290 0.96373 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.83 37.16 0.29 -2.34 16 2 C 0.17 3.49 3.03 -67.60 -0.21 3.28 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.55 1.99 -67.81 -0.14 2.41 16 5 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 6 N -0.71 -11.45 4.58 -54.82 -0.25 -11.70 16 7 C 0.59 9.86 7.78 -12.59 -0.10 9.77 16 8 O -0.56 -11.39 16.57 5.26 0.09 -11.31 16 9 C -0.23 -3.01 6.29 -103.35 -0.65 -3.66 16 10 C -0.17 -1.77 10.56 -37.50 -0.40 -2.16 16 11 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 12 N -0.56 -4.09 5.90 -12.85 -0.08 -4.17 16 13 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 14 C 0.07 0.73 11.69 -16.84 -0.20 0.53 16 15 C -0.12 -2.22 5.46 -26.69 -0.15 -2.37 16 16 C -0.14 -2.88 6.08 -26.61 -0.16 -3.04 16 17 C 0.17 4.10 5.29 -3.71 -0.02 4.08 16 18 N -0.58 -14.53 2.99 -164.77 -0.49 -15.02 16 19 C -0.25 -6.73 8.60 -15.06 -0.13 -6.86 16 20 H 0.07 1.88 6.21 -52.49 -0.33 1.55 16 21 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 22 N -0.90 -26.10 11.14 55.49 0.62 -25.48 16 23 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 28 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 29 H 0.05 1.10 7.45 -51.93 -0.39 0.72 16 30 H 0.39 5.37 7.73 -40.82 -0.32 5.05 16 31 H 0.15 1.29 7.70 -52.49 -0.40 0.89 16 32 H 0.17 0.78 8.06 -52.48 -0.42 0.35 16 33 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -33.17 323.91 -8.22 -41.39 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.82 Total: 5.40 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.13 Total: -0.75 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.20 Total: -56.38 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.17 -8.22 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.476 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds