Wall clock time and date at job start Thu Apr 9 2020 13:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.58180 * 2 1 4 4 C 1.53190 * 109.58822 * 239.57096 * 2 1 3 5 5 H 1.08998 * 109.49304 * 305.52876 * 4 2 1 6 6 N 1.46498 * 109.49965 * 65.62037 * 4 2 1 7 7 C 1.34773 * 120.00329 * 204.99978 * 6 4 2 8 8 O 1.21625 * 120.00015 * 0.02562 * 7 6 4 9 9 C 1.47265 * 120.00160 * 179.97438 * 7 6 4 10 10 C 1.46685 * 126.94007 * 359.68990 * 9 7 6 11 11 C 1.34484 * 106.33117 * 179.88801 * 10 9 7 12 12 N 1.36451 * 108.85882 * 0.37377 * 11 10 9 13 13 H 0.96994 * 124.85641 * 179.73173 * 12 11 10 14 14 C 1.34659 * 110.29230 * 359.75007 * 12 11 10 15 15 C 1.53036 * 109.31413 * 185.57471 * 4 2 1 16 16 C 1.53045 * 109.53891 * 61.36269 * 15 4 2 17 17 C 1.53196 * 109.31092 * 298.63935 * 16 15 4 18 18 N 1.46923 * 109.58650 * 120.27720 * 2 1 3 19 19 C 1.36935 * 120.63511 * 353.37481 * 18 2 1 20 20 H 1.08002 * 119.99539 * 29.03172 * 19 18 2 21 21 C 1.38814 * 120.00426 * 209.03420 * 19 18 2 22 22 N 1.31612 * 119.99931 * 15.02171 * 21 19 18 23 23 Si 1.86801 * 120.00047 * 195.02366 * 21 19 18 24 24 H 1.48501 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47119 * 119.99713 * 23 21 19 26 26 H 1.48497 * 109.46922 * 239.99906 * 23 21 19 27 27 H 1.09001 * 109.47119 * 299.72046 * 1 2 3 28 28 H 1.08997 * 109.47533 * 59.72113 * 1 2 3 29 29 H 1.09002 * 109.46826 * 179.72439 * 1 2 3 30 30 H 0.97009 * 119.99478 * 25.00454 * 6 4 2 31 31 H 1.07999 * 126.83704 * 0.02562 * 10 9 7 32 32 H 1.08004 * 125.57486 * 180.08859 * 11 10 9 33 33 H 1.08004 * 125.80061 * 179.97438 * 14 12 11 34 34 H 1.08998 * 109.45801 * 301.34685 * 15 4 2 35 35 H 1.08999 * 109.45969 * 181.38148 * 15 4 2 36 36 H 1.08995 * 109.50047 * 178.68742 * 16 15 4 37 37 H 1.09006 * 109.49321 * 58.58369 * 16 15 4 38 38 H 1.09007 * 109.58386 * 174.42345 * 17 16 15 39 39 H 1.09004 * 109.58479 * 294.84261 * 17 16 15 40 40 H 0.97000 * 120.00190 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 -1.2445 5 1 1.6030 -1.7269 -1.2890 6 7 1.6705 0.0235 -2.4435 7 6 1.5472 -0.6096 -3.6269 8 8 1.7452 -1.8075 -3.6993 9 6 1.1716 0.1487 -4.8321 10 6 0.8918 1.5861 -4.9177 11 6 0.5954 1.8376 -6.2051 12 7 0.6633 0.6709 -6.9094 13 1 0.4883 0.5861 -7.8597 14 6 1.0075 -0.3460 -6.0966 15 6 3.5675 -0.8494 -1.1691 16 6 3.9570 -1.6655 0.0657 17 6 3.4650 -0.9450 1.3250 18 7 2.0225 -0.6979 1.1954 19 6 1.1538 -1.1098 2.1705 20 1 0.1360 -1.3646 1.9143 21 6 1.5812 -1.1997 3.4881 22 7 2.7044 -0.6210 3.8566 23 14 0.5623 -2.1422 4.7383 24 1 -0.6461 -2.6956 4.0759 25 1 1.3715 -3.2539 5.2993 26 1 0.1519 -1.2270 5.8333 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5181 -0.8874 29 1 -0.3633 -1.0277 -0.0049 30 1 1.5123 0.9788 -2.3857 31 1 0.9206 2.3006 -4.1084 32 1 0.3404 2.8042 -6.6138 33 1 1.1323 -1.3771 -6.3927 34 1 4.0060 0.1461 -1.0995 35 1 3.9378 -1.3474 -2.0651 36 1 5.0413 -1.7692 0.1061 37 1 3.4984 -2.6527 0.0087 38 1 3.6519 -1.5687 2.1993 39 1 3.9903 0.0041 1.4317 40 1 3.0029 -0.6835 4.7774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993362768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:29 Heat of formation + Delta-G solvation = 3.654242 kcal Electronic energy + Delta-G solvation = -21852.593681 eV Core-core repulsion = 18667.426550 eV Total energy + Delta-G solvation = -3185.167131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95059 -40.59626 -38.95933 -35.80276 -34.23791 -33.41081 -32.06806 -30.65100 -29.91654 -27.85043 -26.86173 -24.67276 -22.87903 -22.30178 -21.50621 -21.09476 -20.31616 -19.56091 -18.23658 -17.24413 -17.00476 -16.59669 -15.97414 -15.59054 -15.48866 -15.06230 -14.79726 -14.73509 -14.52185 -14.34803 -14.19467 -13.82669 -13.33541 -13.22354 -12.96199 -12.81548 -12.69139 -12.49194 -12.33899 -11.97841 -11.80145 -11.74774 -11.59289 -11.15873 -10.84022 -10.51677 -10.01288 -9.64421 -9.22619 -8.63523 -7.83508 -5.29550 0.85854 1.47071 1.49848 1.59468 1.62788 2.20637 2.52491 2.67326 2.68986 3.31909 3.66069 3.90693 4.05117 4.12109 4.23170 4.27298 4.38623 4.46073 4.54996 4.59174 4.64511 4.79475 4.91183 4.95164 5.04167 5.06680 5.15417 5.18541 5.29383 5.32313 5.46251 5.54411 5.66213 5.72332 5.79080 5.82949 6.01980 6.43877 6.69929 6.82175 7.18329 7.45231 7.88501 8.40376 9.23585 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033059 B = 0.004082 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.776501 B = 6857.942538 C = 7158.969425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.165 3.835 3 H 0.033 0.967 4 C 0.149 3.851 5 H 0.054 0.946 6 N -0.704 5.704 7 C 0.583 3.417 8 O -0.603 6.603 9 C -0.267 4.267 10 C -0.190 4.190 11 C -0.002 4.002 12 N -0.537 5.537 13 H 0.436 0.564 14 C 0.072 3.928 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.176 3.824 18 N -0.601 5.601 19 C -0.253 4.253 20 H 0.072 0.928 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.293 1.293 26 H -0.291 1.291 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.409 0.591 31 H 0.156 0.844 32 H 0.207 0.793 33 H 0.181 0.819 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.004 0.996 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 6.817 -21.925 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.058 3.942 3 H 0.051 0.949 4 C 0.042 3.958 5 H 0.072 0.928 6 N -0.354 5.354 7 C 0.374 3.626 8 O -0.487 6.487 9 C -0.277 4.277 10 C -0.214 4.214 11 C -0.131 4.131 12 N -0.133 5.133 13 H 0.276 0.724 14 C -0.067 4.067 15 C -0.147 4.147 16 C -0.169 4.169 17 C 0.051 3.949 18 N -0.325 5.325 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.244 4.244 22 N -0.580 5.580 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.220 1.220 26 H -0.218 1.218 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.245 0.755 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.198 0.802 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.022 0.978 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.469 6.029 -21.943 23.019 hybrid contribution -0.252 -0.304 0.927 1.007 sum -3.721 5.725 -21.017 22.098 Atomic orbital electron populations 1.21718 0.94507 1.00952 1.01224 1.20709 0.94269 0.93456 0.85732 0.94904 1.21250 0.94749 0.95450 0.84377 0.92765 1.45683 1.70073 1.12467 1.07138 1.17929 0.75343 0.86022 0.83334 1.90721 1.54383 1.16847 1.86705 1.20408 1.18448 0.95728 0.93150 1.22322 1.07704 0.93233 0.98097 1.22346 1.07339 0.91656 0.91709 1.41659 1.53130 1.06625 1.11913 0.72390 1.21940 1.00552 0.94560 0.89641 1.21682 0.95512 1.00231 0.97311 1.22031 1.00296 0.98727 0.95867 1.20647 0.83137 0.96141 0.95019 1.44287 1.03202 1.65985 1.18998 1.19505 0.95138 1.36910 0.86783 0.91055 1.25754 0.99045 1.00956 0.98637 1.70167 1.24890 1.46192 1.16760 0.85286 0.78496 0.78025 0.79143 1.19326 1.21953 1.21785 0.93080 0.90853 0.94241 0.75464 0.82664 0.77619 0.80157 0.91670 0.92937 0.90900 0.93807 0.92487 0.97762 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 7.83 71.98 0.56 -4.25 16 2 C 0.17 6.85 3.03 44.98 0.14 6.99 16 3 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 4 C 0.15 5.69 1.99 45.07 0.09 5.78 16 5 H 0.05 2.44 7.58 -2.39 -0.02 2.43 16 6 N -0.70 -22.03 4.58 -445.60 -2.04 -24.07 16 7 C 0.58 19.40 7.78 86.62 0.67 20.08 16 8 O -0.60 -25.01 16.57 -4.11 -0.07 -25.07 16 9 C -0.27 -6.67 6.29 -19.04 -0.12 -6.79 16 10 C -0.19 -3.43 10.56 23.62 0.25 -3.18 16 11 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 12 N -0.54 -5.91 5.90 -194.55 -1.15 -7.06 16 13 H 0.44 1.38 8.96 -92.71 -0.83 0.55 16 14 C 0.07 1.37 11.69 83.91 0.98 2.35 16 15 C -0.11 -4.09 5.46 30.62 0.17 -3.92 16 16 C -0.13 -5.35 6.08 30.67 0.19 -5.16 16 17 C 0.18 8.74 5.29 86.36 0.46 9.20 16 18 N -0.60 -30.48 2.99 -675.21 -2.02 -32.49 16 19 C -0.25 -13.93 8.60 84.03 0.72 -13.20 16 20 H 0.07 3.84 6.21 -2.91 -0.02 3.82 16 21 C -0.05 -2.73 4.96 84.86 0.42 -2.31 16 22 N -0.93 -55.31 11.14 21.65 0.24 -55.07 16 23 Si 0.96 45.53 29.58 68.60 2.03 47.56 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 27 H 0.05 2.05 7.62 -2.39 -0.02 2.03 16 28 H 0.07 2.26 7.80 -2.39 -0.02 2.24 16 29 H 0.04 1.60 7.45 -2.39 -0.02 1.58 16 30 H 0.41 10.45 7.73 -92.70 -0.72 9.73 16 31 H 0.16 2.33 7.70 -2.91 -0.02 2.30 16 32 H 0.21 0.73 8.06 -2.91 -0.02 0.70 16 33 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 3.19 6.06 -2.38 -0.01 3.18 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -73.86 323.91 2.02 -71.84 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.49 Total: 17.83 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.52 Total: 6.54 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.97 Total: -118.70 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.07 Total: -25.07 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.86 2.02 -71.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993362768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.495 kcal (2) G-P(sol) polarization free energy of solvation -73.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds