Wall clock time and date at job start Thu Apr 9 2020 13:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 110.88330 * 2 1 4 4 C 1.55130 * 110.94255 * 124.08154 * 2 1 3 5 5 N 1.47422 * 104.72165 * 155.29155 * 4 2 1 6 6 C 1.34777 * 125.64713 * 155.82175 * 5 4 2 7 7 O 1.21633 * 119.99864 * 359.97438 * 6 5 4 8 8 C 1.47266 * 119.99891 * 179.71298 * 6 5 4 9 9 C 1.46685 * 126.94134 * 0.02562 * 8 6 5 10 10 C 1.34488 * 106.32886 * 180.02562 * 9 8 6 11 11 N 1.36445 * 108.85722 * 359.97438 * 10 9 8 12 12 C 1.46507 * 124.84886 * 180.02562 * 11 10 9 13 13 C 1.34654 * 110.30058 * 359.73124 * 11 10 9 14 14 C 1.47026 * 108.70233 * 335.54939 * 5 4 2 15 15 C 1.54323 * 107.27136 * 1.29358 * 14 5 4 16 16 H 1.09005 * 110.71823 * 263.82546 * 15 14 5 17 17 N 1.46492 * 110.71940 * 140.73334 * 15 14 5 18 18 C 1.36941 * 120.00288 * 86.45055 * 17 15 14 19 19 H 1.07998 * 120.00166 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99928 * 179.97438 * 18 17 15 21 21 N 1.31625 * 119.99930 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00262 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47323 * 90.00054 * 22 20 18 24 24 H 1.48499 * 109.46891 * 210.00232 * 22 20 18 25 25 H 1.48507 * 109.46944 * 329.99599 * 22 20 18 26 26 H 1.09002 * 109.46881 * 183.87463 * 1 2 3 27 27 H 1.09001 * 109.46875 * 303.87511 * 1 2 3 28 28 H 1.08998 * 109.47337 * 63.87655 * 1 2 3 29 29 H 1.08997 * 110.49580 * 36.44701 * 4 2 1 30 30 H 1.08995 * 110.34073 * 274.05519 * 4 2 1 31 31 H 1.07993 * 126.83619 * 359.97438 * 9 8 6 32 32 H 1.08002 * 125.56936 * 179.97438 * 10 9 8 33 33 H 1.09003 * 109.46693 * 89.97828 * 12 11 10 34 34 H 1.08998 * 109.47288 * 209.97502 * 12 11 10 35 35 H 1.08999 * 109.47504 * 329.98015 * 12 11 10 36 36 H 1.07998 * 125.80546 * 180.27561 * 13 11 10 37 37 H 1.08999 * 109.87550 * 120.71048 * 14 5 4 38 38 H 1.08999 * 109.87857 * 241.87221 * 14 5 4 39 39 H 0.97002 * 120.00232 * 266.45186 * 17 15 14 40 40 H 0.97002 * 120.00154 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0845 -0.8119 1.2000 5 7 3.4281 -1.2421 0.7723 6 6 4.4491 -1.5603 1.5926 7 8 4.3008 -1.5035 2.7985 8 6 5.7425 -1.9824 1.0288 9 6 6.0858 -2.1089 -0.3917 10 6 7.3652 -2.5211 -0.4362 11 7 7.8298 -2.6556 0.8396 12 6 9.1839 -3.0866 1.1964 13 6 6.8681 -2.3295 1.7239 14 6 3.4679 -1.2729 -0.6971 15 6 2.0862 -0.8073 -1.2026 16 1 1.4471 -1.6629 -1.4213 17 7 2.2275 0.0470 -2.3842 18 6 2.3004 -0.5150 -3.6308 19 1 2.2540 -1.5882 -3.7429 20 6 2.4338 0.2945 -4.7505 21 7 2.5033 -0.2457 -5.9487 22 14 2.5147 2.1508 -4.5567 23 1 3.9297 2.5700 -4.3918 24 1 1.9436 2.7998 -5.7641 25 1 1.7350 2.5580 -3.3602 26 1 -0.3633 -1.0253 0.0694 27 1 -0.3633 0.5728 0.8532 28 1 -0.3634 0.4525 -0.9227 29 1 1.4539 -1.6785 1.3984 30 1 2.1524 -0.1803 2.0857 31 1 5.4396 -1.9112 -1.2341 32 1 7.9321 -2.7141 -1.3350 33 1 9.8341 -2.2151 1.2732 34 1 9.1591 -3.6069 2.1539 35 1 9.5658 -3.7583 0.4276 36 1 6.9676 -2.3431 2.7992 37 1 4.2426 -0.5980 -1.0611 38 1 3.6659 -2.2880 -1.0413 39 1 2.2696 1.0109 -2.2837 40 1 2.5969 0.3200 -6.7311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054566015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:06 Heat of formation + Delta-G solvation = 40.793225 kcal Electronic energy + Delta-G solvation = -21641.949149 eV Core-core repulsion = 18458.392485 eV Total energy + Delta-G solvation = -3183.556664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17248 -39.39852 -37.33643 -34.11233 -33.09868 -32.12775 -31.00120 -29.12579 -27.83882 -27.36064 -25.59573 -23.93142 -22.18862 -20.69582 -20.40310 -19.95092 -18.90104 -17.51639 -17.13678 -15.96501 -15.85399 -15.44038 -14.92173 -14.51576 -14.18137 -13.84840 -13.34654 -13.25749 -13.18863 -12.97281 -12.73626 -12.56697 -12.48817 -12.17326 -12.03273 -11.91259 -11.50009 -11.36716 -11.04342 -10.63392 -10.59224 -10.30528 -9.97962 -9.66295 -9.59046 -8.97938 -8.54798 -8.39483 -8.07752 -7.36152 -5.82698 -3.19892 1.90109 2.55715 2.78945 3.34668 3.38193 3.42679 3.48691 3.83562 4.54083 4.54581 4.79654 4.88554 4.92258 5.04590 5.10923 5.12876 5.15589 5.35747 5.52441 5.54539 5.63139 5.76947 5.81430 5.85102 5.94812 6.03413 6.13131 6.18256 6.22453 6.38832 6.47240 6.53254 6.67536 6.84491 6.84991 7.10972 7.24314 7.91229 7.97145 8.36302 8.60771 9.13483 9.85933 10.04771 11.35051 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.005473 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.485296 B = 5114.414743 C = 6477.044027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.609 5.609 6 C 0.604 3.396 7 O -0.570 6.570 8 C -0.228 4.228 9 C -0.168 4.168 10 C -0.025 4.025 11 N -0.450 5.450 12 C 0.071 3.929 13 C 0.067 3.933 14 C 0.075 3.925 15 C 0.179 3.821 16 H 0.074 0.926 17 N -0.737 5.737 18 C -0.249 4.249 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.930 5.930 22 Si 0.881 3.119 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.171 0.829 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.364 0.636 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 -4.111 14.004 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.396 3.604 7 O -0.451 6.451 8 C -0.238 4.238 9 C -0.191 4.191 10 C -0.150 4.150 11 N -0.126 5.126 12 C -0.071 4.071 13 C -0.069 4.069 14 C -0.050 4.050 15 C 0.068 3.932 16 H 0.091 0.909 17 N -0.378 5.378 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.186 4.186 21 N -0.577 5.577 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.189 0.811 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.197 0.803 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.897 -4.369 14.480 17.547 hybrid contribution 0.292 1.326 -0.180 1.370 sum 9.189 -3.043 14.301 17.268 Atomic orbital electron populations 1.21626 0.93800 1.01861 1.01943 1.22697 0.96394 0.99621 0.95022 0.90087 1.22251 0.82934 0.98023 0.97462 1.48238 1.11621 1.66372 1.07879 1.17050 0.82250 0.76254 0.84889 1.90717 1.83659 1.56366 1.14397 1.20298 0.94412 1.15343 0.93750 1.22844 0.95618 1.04735 0.95927 1.21849 0.96525 1.09911 0.86760 1.43618 1.11095 1.51677 1.06253 1.22076 0.81167 1.01068 1.02807 1.21674 0.87604 1.02106 0.95469 1.23445 1.02149 1.01517 0.77920 1.21271 0.92254 0.93756 0.85947 0.90858 1.42704 1.88782 1.04068 1.02292 1.19072 1.43147 0.93970 0.81710 0.88963 1.24652 1.01602 0.97259 0.95102 1.69699 1.56511 1.34252 0.97278 0.86604 0.77933 0.87325 0.76996 1.21035 1.21720 1.20207 0.92516 0.93095 0.91541 0.91577 0.90962 0.81966 0.81598 0.90857 0.89830 0.89656 0.81130 0.90476 0.91528 0.80291 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.31 37.16 0.35 -1.48 16 2 C -0.12 -1.81 3.27 -88.35 -0.29 -2.10 16 3 H 0.08 1.29 8.01 -51.93 -0.42 0.87 16 4 C 0.12 1.78 6.38 -2.41 -0.02 1.77 16 5 N -0.61 -10.42 3.32 -171.71 -0.57 -10.99 16 6 C 0.60 10.97 7.84 -12.59 -0.10 10.87 16 7 O -0.57 -11.55 17.17 5.25 0.09 -11.46 16 8 C -0.23 -3.67 6.23 -103.35 -0.64 -4.31 16 9 C -0.17 -2.53 9.39 -37.50 -0.35 -2.88 16 10 C -0.02 -0.31 11.34 -16.82 -0.19 -0.50 16 11 N -0.45 -4.98 3.09 -124.52 -0.38 -5.36 16 12 C 0.07 0.44 11.03 59.85 0.66 1.10 16 13 C 0.07 0.89 11.12 -16.84 -0.19 0.70 16 14 C 0.08 1.31 4.74 -3.06 -0.01 1.30 16 15 C 0.18 3.26 3.05 -66.10 -0.20 3.06 16 16 H 0.07 1.37 8.02 -51.93 -0.42 0.95 16 17 N -0.74 -16.31 4.98 -51.66 -0.26 -16.56 16 18 C -0.25 -6.60 10.46 -15.06 -0.16 -6.76 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -28.14 13.97 55.49 0.78 -27.37 16 22 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 26 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.95 7.99 -51.93 -0.41 0.53 16 30 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.16 2.57 4.80 -52.49 -0.25 2.31 16 32 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 35 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 36 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.08 1.43 6.73 -51.93 -0.35 1.08 16 38 H 0.07 1.15 7.01 -51.93 -0.36 0.78 16 39 H 0.36 8.04 5.59 -40.82 -0.23 7.81 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -33.16 328.08 -7.18 -40.35 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.83 Total: 8.87 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.24 Total: 0.95 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.44 Total: -60.28 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.16 -7.18 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054566015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.142 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds