Wall clock time and date at job start Thu Apr 9 2020 13:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.58260 * 2 1 4 4 C 1.53191 * 109.58773 * 120.27721 * 2 1 3 5 5 C 1.53042 * 109.31437 * 174.56860 * 4 2 1 6 6 C 1.53047 * 109.53404 * 298.63683 * 5 4 2 7 7 H 1.09001 * 109.49718 * 301.41172 * 6 5 4 8 8 N 1.46501 * 109.49459 * 181.31340 * 6 5 4 9 9 C 1.34781 * 119.99754 * 154.99776 * 8 6 5 10 10 O 1.21618 * 119.99842 * 0.02562 * 9 8 6 11 11 C 1.47259 * 119.99767 * 180.02562 * 9 8 6 12 12 C 1.46687 * 126.94318 * 359.68904 * 11 9 8 13 13 C 1.34489 * 106.33332 * 179.88963 * 12 11 9 14 14 N 1.36451 * 108.85179 * 0.37550 * 13 12 11 15 15 H 0.97007 * 124.84581 * 179.77780 * 14 13 12 16 16 C 1.34648 * 110.29930 * 359.74749 * 14 13 12 17 17 C 1.53189 * 109.31332 * 61.36475 * 6 5 4 18 18 N 1.46920 * 109.58934 * 239.71289 * 2 1 3 19 19 C 1.36940 * 120.63146 * 6.46825 * 18 2 1 20 20 H 1.08008 * 119.99359 * 331.06885 * 19 18 2 21 21 C 1.38810 * 120.00700 * 151.07078 * 19 18 2 22 22 N 1.31615 * 120.00193 * 160.80709 * 21 19 18 23 23 Si 1.86806 * 119.99569 * 340.80720 * 21 19 18 24 24 H 1.48500 * 109.47035 * 92.35132 * 23 21 19 25 25 H 1.48496 * 109.46873 * 212.35381 * 23 21 19 26 26 H 1.48507 * 109.47127 * 332.35620 * 23 21 19 27 27 H 1.09005 * 109.47731 * 299.99915 * 1 2 3 28 28 H 1.09003 * 109.47690 * 60.00161 * 1 2 3 29 29 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.49827 * 294.52087 * 4 2 1 31 31 H 1.09002 * 109.49658 * 54.61666 * 4 2 1 32 32 H 1.08997 * 109.45974 * 58.65498 * 5 4 2 33 33 H 1.08998 * 109.46199 * 178.61865 * 5 4 2 34 34 H 0.96999 * 120.00178 * 335.00896 * 8 6 5 35 35 H 1.08001 * 126.83703 * 0.02562 * 12 11 9 36 36 H 1.08000 * 125.57522 * 180.15908 * 13 12 11 37 37 H 1.08013 * 125.80195 * 179.97438 * 16 14 13 38 38 H 1.09005 * 109.58795 * 65.15337 * 17 6 5 39 39 H 1.08994 * 109.58758 * 185.43527 * 17 6 5 40 40 H 0.97005 * 119.99195 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8431 1.1730 6 6 3.9604 -1.6607 -0.0598 7 1 3.5037 -2.6487 -0.0016 8 7 5.4181 -1.7973 -0.1120 9 6 5.9744 -2.8393 -0.7610 10 8 5.2663 -3.6659 -1.3036 11 6 7.4396 -2.9769 -0.8130 12 6 8.4316 -2.0725 -0.2217 13 6 9.6377 -2.5899 -0.5154 14 7 9.4627 -3.7303 -1.2440 15 1 10.1810 -4.2883 -1.5812 16 6 8.1506 -3.9706 -1.4275 17 6 3.4685 -0.9436 -1.3209 18 7 2.0225 -0.6981 -1.1952 19 6 1.1534 -1.1130 -2.1688 20 1 0.1360 -1.3682 -1.9112 21 6 1.5799 -1.2055 -3.4865 22 7 0.9061 -1.9397 -4.3462 23 14 3.1101 -0.2878 -4.0395 24 1 4.2939 -1.1746 -3.9072 25 1 2.9553 0.1229 -5.4581 26 1 3.2976 0.9176 -3.1926 27 1 -0.3635 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.7637 -0.1652 2.1372 31 1 1.6049 -1.7245 1.2923 32 1 4.0045 0.1530 1.1022 33 1 3.9381 -1.3388 2.0704 34 1 5.9828 -1.1379 0.3206 35 1 8.2330 -1.1717 0.3400 36 1 10.5893 -2.1695 -0.2253 37 1 7.7309 -4.8059 -1.9686 38 1 3.9920 0.0065 -1.4288 39 1 3.6599 -1.5673 -2.1941 40 1 1.2040 -2.0040 -5.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071526496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:19 Heat of formation + Delta-G solvation = 3.622730 kcal Electronic energy + Delta-G solvation = -22056.908337 eV Core-core repulsion = 18871.739840 eV Total energy + Delta-G solvation = -3185.168497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01505 -40.62904 -39.18593 -36.02924 -34.64337 -32.76435 -32.57887 -31.35712 -30.01701 -27.86571 -26.67700 -24.68778 -23.72487 -22.13084 -21.43623 -21.21030 -20.36697 -19.62458 -18.48339 -17.65689 -17.01061 -16.57744 -16.42073 -15.91298 -15.32992 -15.17796 -14.97678 -14.76785 -14.58884 -14.56983 -14.25987 -13.88146 -13.77250 -13.43304 -13.06347 -13.00357 -12.68450 -12.52367 -12.49135 -12.06039 -11.75147 -11.69158 -11.40127 -11.30667 -10.92481 -10.75579 -10.16797 -9.73602 -9.30007 -8.85536 -8.16656 -5.47457 0.77089 1.27636 1.28849 1.39311 1.57631 2.13119 2.40790 2.55604 2.61209 3.08956 3.35861 3.82074 4.03478 4.05342 4.12400 4.19434 4.28687 4.39493 4.41692 4.52224 4.61030 4.69182 4.84731 4.89072 4.96118 4.99997 5.02215 5.10583 5.16936 5.20442 5.29010 5.51848 5.53452 5.66198 5.76758 5.91095 5.95250 6.18331 6.63327 6.76052 6.93179 7.40414 7.65291 8.05495 9.03069 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.005891 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.187329 B = 4751.478448 C = 5693.439332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 H 0.047 0.953 4 C -0.120 4.120 5 C -0.106 4.106 6 C 0.137 3.863 7 H 0.051 0.949 8 N -0.707 5.707 9 C 0.573 3.427 10 O -0.606 6.606 11 C -0.269 4.269 12 C -0.187 4.187 13 C 0.001 3.999 14 N -0.536 5.536 15 H 0.436 0.564 16 C 0.065 3.935 17 C 0.121 3.879 18 N -0.614 5.614 19 C -0.234 4.234 20 H 0.069 0.931 21 C -0.036 4.036 22 N -0.958 5.958 23 Si 0.940 3.060 24 H -0.302 1.302 25 H -0.309 1.309 26 H -0.253 1.253 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.164 0.836 36 H 0.213 0.787 37 H 0.174 0.826 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.045 3.029 14.766 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.065 0.935 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.031 3.969 7 H 0.069 0.931 8 N -0.358 5.358 9 C 0.364 3.636 10 O -0.488 6.488 11 C -0.280 4.280 12 C -0.210 4.210 13 C -0.127 4.127 14 N -0.132 5.132 15 H 0.277 0.723 16 C -0.074 4.074 17 C -0.006 4.006 18 N -0.340 5.340 19 C -0.364 4.364 20 H 0.087 0.913 21 C -0.231 4.231 22 N -0.605 5.605 23 Si 0.771 3.229 24 H -0.231 1.231 25 H -0.238 1.238 26 H -0.177 1.177 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.182 0.818 36 H 0.230 0.770 37 H 0.191 0.809 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.640 2.394 14.239 24.377 hybrid contribution 0.662 -0.143 -1.312 1.477 sum 20.302 2.251 12.927 24.174 Atomic orbital electron populations 1.21759 0.94855 1.00911 1.01357 1.20896 0.94254 0.94097 0.85534 0.93539 1.21979 0.94596 1.00928 0.98453 1.21669 0.96935 1.00347 0.95444 1.21334 0.79577 0.99235 0.96791 0.93052 1.45684 1.07135 1.27173 1.55835 1.18150 0.88023 0.80550 0.76924 1.90790 1.65075 1.44679 1.48295 1.20446 0.91028 1.02981 1.13515 1.22339 0.91019 1.01557 1.06089 1.22435 1.00646 0.89359 1.00279 1.41651 1.06540 1.22453 1.42565 0.72350 1.21897 0.84018 1.00234 1.01211 1.21657 0.85068 0.96695 0.97140 1.44642 1.01584 1.66416 1.21325 1.18932 0.95254 1.35799 0.86434 0.91329 1.25881 1.00370 1.00297 0.96512 1.69943 1.43673 1.42022 1.04828 0.85986 0.80467 0.80293 0.76165 1.23057 1.23758 1.17701 0.89609 0.94265 0.94462 0.87723 0.93375 0.89630 0.89284 0.74838 0.81848 0.77033 0.80882 0.94886 0.95105 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 7.94 71.98 0.57 -4.21 16 2 C 0.16 5.90 3.49 44.97 0.16 6.06 16 3 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.12 -3.55 5.37 30.67 0.16 -3.39 16 5 C -0.11 -2.91 5.35 30.62 0.16 -2.75 16 6 C 0.14 5.28 2.61 45.07 0.12 5.40 16 7 H 0.05 2.39 7.58 -2.39 -0.02 2.37 16 8 N -0.71 -23.39 5.08 -445.58 -2.26 -25.65 16 9 C 0.57 22.17 7.78 86.61 0.67 22.85 16 10 O -0.61 -30.40 16.57 -4.09 -0.07 -30.47 16 11 C -0.27 -7.82 6.29 -19.04 -0.12 -7.94 16 12 C -0.19 -3.61 10.56 23.62 0.25 -3.36 16 13 C 0.00 0.01 11.89 83.12 0.99 1.00 16 14 N -0.54 -7.51 5.90 -194.55 -1.15 -8.66 16 15 H 0.44 2.63 8.96 -92.70 -0.83 1.80 16 16 C 0.06 1.55 11.69 83.92 0.98 2.54 16 17 C 0.12 5.74 3.78 86.31 0.33 6.06 16 18 N -0.61 -30.43 2.76 -674.54 -1.86 -32.29 16 19 C -0.23 -14.00 9.05 84.03 0.76 -13.24 16 20 H 0.07 4.34 6.39 -2.91 -0.02 4.32 16 21 C -0.04 -2.31 5.25 84.86 0.45 -1.86 16 22 N -0.96 -64.88 13.97 21.65 0.30 -64.58 16 23 Si 0.94 52.07 24.35 68.60 1.67 53.74 16 24 H -0.30 -17.33 6.62 99.48 0.66 -16.67 16 25 H -0.31 -17.02 7.11 99.48 0.71 -16.31 16 26 H -0.25 -12.97 6.62 99.48 0.66 -12.31 16 27 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.04 1.59 7.64 -2.39 -0.02 1.57 16 29 H 0.04 1.48 7.42 -2.39 -0.02 1.46 16 30 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.41 9.93 7.73 -92.71 -0.72 9.22 16 35 H 0.16 2.34 7.70 -2.91 -0.02 2.32 16 36 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.17 4.13 8.06 -2.90 -0.02 4.10 16 38 H 0.03 1.49 7.04 -2.38 -0.02 1.48 16 39 H 0.03 1.76 4.62 -2.39 -0.01 1.75 16 40 H 0.26 16.74 8.31 -92.70 -0.77 15.97 16 Total: -1.00 -88.78 318.39 1.53 -87.25 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -0.58 Total: 13.51 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.48 Total: 7.15 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -4.97 Total: -131.18 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.07 Total: -30.47 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 1.67 Total: 53.74 kcal Total: -88.78 1.53 -87.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.872 kcal (2) G-P(sol) polarization free energy of solvation -88.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds