Wall clock time and date at job start Thu Apr 9 2020 13:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.70161 * 2 1 4 4 C 1.53185 * 109.58936 * 239.64048 * 2 1 3 5 5 C 1.53106 * 109.33514 * 185.57551 * 4 2 1 6 6 C 1.53039 * 109.49819 * 61.34192 * 5 4 2 7 7 H 1.09009 * 109.49596 * 178.68701 * 6 5 4 8 8 N 1.46501 * 109.49913 * 58.62316 * 6 5 4 9 9 C 1.34777 * 120.00099 * 154.78364 * 8 6 5 10 10 O 1.21634 * 120.00095 * 0.27984 * 9 8 6 11 11 C 1.47263 * 120.00075 * 180.27713 * 9 8 6 12 12 C 1.46692 * 126.93947 * 359.68529 * 11 9 8 13 13 C 1.34486 * 106.33005 * 179.83236 * 12 11 9 14 14 N 1.36452 * 108.85599 * 0.43575 * 13 12 11 15 15 H 0.97002 * 124.85501 * 179.73365 * 14 13 12 16 16 C 1.34662 * 110.29970 * 359.71321 * 14 13 12 17 17 C 1.53183 * 109.34370 * 298.65309 * 6 5 4 18 18 N 1.46925 * 108.77739 * 54.64985 * 17 6 5 19 19 C 1.36937 * 120.62908 * 126.36580 * 18 17 6 20 20 H 1.08003 * 120.00443 * 221.18558 * 19 18 17 21 21 C 1.38813 * 120.00156 * 41.19665 * 19 18 17 22 22 N 1.31617 * 119.99715 * 214.83806 * 21 19 18 23 23 Si 1.86804 * 119.99901 * 34.82712 * 21 19 18 24 24 H 1.48500 * 109.46805 * 84.63573 * 23 21 19 25 25 H 1.48500 * 109.46859 * 204.63036 * 23 21 19 26 26 H 1.48491 * 109.47231 * 324.63714 * 23 21 19 27 27 H 1.09001 * 109.47504 * 299.64965 * 1 2 3 28 28 H 1.09001 * 109.47336 * 59.64799 * 1 2 3 29 29 H 1.08999 * 109.47119 * 179.65182 * 1 2 3 30 30 H 1.09002 * 109.50115 * 305.52974 * 4 2 1 31 31 H 1.09006 * 109.49775 * 65.59515 * 4 2 1 32 32 H 1.08995 * 109.45015 * 301.35274 * 5 4 2 33 33 H 1.08997 * 109.50598 * 181.36890 * 5 4 2 34 34 H 0.97001 * 119.99867 * 335.06323 * 8 6 5 35 35 H 1.07990 * 126.83360 * 0.02562 * 12 11 9 36 36 H 1.07993 * 125.57574 * 180.14529 * 13 12 11 37 37 H 1.08002 * 125.80210 * 179.97438 * 16 14 13 38 38 H 1.09003 * 109.59296 * 174.43779 * 17 6 5 39 39 H 1.09003 * 109.59096 * 294.72186 * 17 6 5 40 40 H 0.97002 * 119.99585 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5682 -0.8483 -1.1705 6 6 3.9569 -1.6656 0.0636 7 1 5.0412 -1.7700 0.1041 8 7 3.3405 -2.9924 -0.0145 9 6 3.8991 -4.0341 0.6329 10 8 4.9121 -3.8717 1.2863 11 6 3.2830 -5.3690 0.5493 12 6 2.0662 -5.7340 -0.1843 13 6 1.8840 -7.0512 0.0172 14 7 2.8836 -7.5168 0.8209 15 1 2.9745 -8.4363 1.1163 16 6 3.7262 -6.5177 1.1450 17 6 3.4650 -0.9469 1.3238 18 7 2.0226 -0.6994 1.1946 19 6 1.1537 -1.1134 2.1686 20 1 0.2056 -1.5527 1.8955 21 6 1.4913 -0.9682 3.5073 22 7 1.1096 -1.8726 4.3840 23 14 2.4875 0.5106 4.0642 24 1 1.5764 1.6575 4.3086 25 1 3.2103 0.1768 5.3177 26 1 3.4675 0.8731 3.0090 27 1 -0.3634 0.5084 0.8931 28 1 -0.3634 0.5193 -0.8868 29 1 -0.3633 -1.0276 -0.0062 30 1 1.6030 -1.7254 -1.2912 31 1 1.7656 -0.1672 -2.1368 32 1 4.0068 0.1470 -1.0997 33 1 3.9389 -1.3454 -2.0668 34 1 2.5327 -3.1219 -0.5356 35 1 1.4429 -5.0766 -0.7720 36 1 1.0757 -7.6426 -0.3867 37 1 4.6028 -6.6079 1.7694 38 1 3.6517 -1.5716 2.1973 39 1 3.9921 0.0010 1.4332 40 1 1.3458 -1.7713 5.3193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071526497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:20 Heat of formation + Delta-G solvation = 7.041518 kcal Electronic energy + Delta-G solvation = -22568.690595 eV Core-core repulsion = 19383.670348 eV Total energy + Delta-G solvation = -3185.020247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92391 -40.60653 -38.93371 -35.70349 -34.42577 -32.67402 -32.48027 -31.22154 -29.94039 -27.91811 -26.58934 -24.38547 -23.82718 -22.02285 -21.45530 -20.69172 -20.35940 -19.61816 -18.28320 -17.36252 -16.74956 -16.70027 -16.02946 -15.77272 -15.38560 -15.02641 -14.84960 -14.64909 -14.51006 -14.35153 -14.18366 -13.83396 -13.78754 -13.39757 -12.94640 -12.91768 -12.68812 -12.56240 -12.44214 -12.13007 -11.77624 -11.57567 -11.31975 -11.11550 -10.81774 -10.47039 -9.95318 -9.60571 -9.20999 -8.50763 -8.21751 -5.43835 0.89945 1.34711 1.40100 1.47853 1.63229 2.30744 2.50258 2.68127 2.81523 2.98631 3.48419 3.96630 4.09535 4.13856 4.18746 4.28279 4.42725 4.44110 4.59660 4.65463 4.69381 4.78455 4.86760 5.02580 5.04611 5.06351 5.13399 5.14743 5.21600 5.29353 5.33659 5.59428 5.68788 5.78438 5.83687 5.98682 6.02700 6.32152 6.73170 6.88066 7.08459 7.53415 7.73911 8.24618 8.98151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.007032 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.817477 B = 3981.087320 C = 4549.135953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.151 3.849 3 H 0.033 0.967 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.071 0.929 8 N -0.689 5.689 9 C 0.579 3.421 10 O -0.611 6.611 11 C -0.266 4.266 12 C -0.190 4.190 13 C -0.002 4.002 14 N -0.537 5.537 15 H 0.436 0.564 16 C 0.065 3.935 17 C 0.136 3.864 18 N -0.597 5.597 19 C -0.238 4.238 20 H 0.050 0.950 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.892 3.108 24 H -0.288 1.288 25 H -0.312 1.312 26 H -0.248 1.248 27 H 0.034 0.966 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.149 0.851 36 H 0.210 0.790 37 H 0.179 0.821 38 H 0.022 0.978 39 H 0.030 0.970 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -7.805 -15.510 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.051 0.949 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.089 0.911 8 N -0.339 5.339 9 C 0.370 3.630 10 O -0.495 6.495 11 C -0.276 4.276 12 C -0.214 4.214 13 C -0.130 4.130 14 N -0.133 5.133 15 H 0.276 0.724 16 C -0.073 4.073 17 C 0.009 3.991 18 N -0.322 5.322 19 C -0.368 4.368 20 H 0.067 0.933 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.720 3.280 24 H -0.216 1.216 25 H -0.240 1.240 26 H -0.172 1.172 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.241 0.759 35 H 0.167 0.833 36 H 0.226 0.774 37 H 0.196 0.804 38 H 0.041 0.959 39 H 0.048 0.952 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.310 -7.851 -14.909 17.008 hybrid contribution 0.141 0.434 1.437 1.508 sum 2.451 -7.418 -13.472 15.574 Atomic orbital electron populations 1.21687 0.94862 1.01045 1.00778 1.20912 0.94142 0.93741 0.86494 0.94891 1.21964 0.94840 1.00955 0.98165 1.21685 0.97114 1.00158 0.95756 1.21401 0.96670 0.82619 0.96975 0.91065 1.45530 1.29531 1.07545 1.51245 1.17896 0.82709 0.84831 0.77598 1.90666 1.28127 1.86446 1.44267 1.20545 1.02549 0.93046 1.11484 1.22236 0.97662 0.96294 1.05214 1.22316 0.95861 0.95177 0.99638 1.41583 1.20948 1.11343 1.39397 0.72405 1.21885 0.97237 0.87337 1.00877 1.21560 0.85257 0.96053 0.96192 1.44382 1.01627 1.65835 1.20381 1.18413 1.01182 1.32310 0.84883 0.93284 1.26071 0.98763 0.98907 0.96650 1.70187 1.50542 1.33095 1.03220 0.86550 0.79704 0.84329 0.77456 1.21563 1.24017 1.17193 0.94696 0.90323 0.93896 0.92422 0.88723 0.89881 0.89587 0.75865 0.83299 0.77363 0.80387 0.95926 0.95195 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.07 71.98 0.58 -3.75 16 2 C 0.15 5.43 3.50 44.97 0.16 5.59 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.12 -3.26 5.21 30.69 0.16 -3.10 16 5 C -0.11 -2.95 5.59 30.64 0.17 -2.78 16 6 C 0.13 4.81 2.81 45.07 0.13 4.94 16 7 H 0.07 2.73 7.57 -2.38 -0.02 2.71 16 8 N -0.69 -25.87 4.91 -445.58 -2.19 -28.05 16 9 C 0.58 24.47 7.78 86.62 0.67 25.15 16 10 O -0.61 -30.17 16.57 -4.14 -0.07 -30.23 16 11 C -0.27 -9.35 6.29 -19.04 -0.12 -9.47 16 12 C -0.19 -5.30 10.56 23.62 0.25 -5.05 16 13 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 14 N -0.54 -10.50 5.90 -194.55 -1.15 -11.64 16 15 H 0.44 4.72 8.96 -92.71 -0.83 3.89 16 16 C 0.06 1.86 11.69 83.91 0.98 2.84 16 17 C 0.14 6.26 4.20 86.36 0.36 6.63 16 18 N -0.60 -27.58 2.38 -675.25 -1.61 -29.19 16 19 C -0.24 -13.29 8.42 84.03 0.71 -12.59 16 20 H 0.05 2.96 6.83 -2.91 -0.02 2.94 16 21 C -0.01 -0.35 4.82 84.86 0.41 0.06 16 22 N -0.93 -59.85 13.97 21.65 0.30 -59.55 16 23 Si 0.89 47.46 27.39 68.60 1.88 49.34 16 24 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 25 H -0.31 -17.21 7.11 99.48 0.71 -16.50 16 26 H -0.25 -12.44 5.24 99.48 0.52 -11.92 16 27 H 0.03 1.37 7.68 -2.39 -0.02 1.35 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.04 1.55 7.42 -2.39 -0.02 1.54 16 30 H 0.06 1.60 6.40 -2.39 -0.02 1.58 16 31 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.40 13.56 5.89 -92.71 -0.55 13.02 16 35 H 0.15 3.74 7.69 -2.92 -0.02 3.72 16 36 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.02 1.25 7.01 -2.39 -0.02 1.23 16 39 H 0.03 1.37 6.71 -2.39 -0.02 1.35 16 40 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -80.21 318.72 2.11 -78.09 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -0.50 Total: 21.82 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.45 Total: 9.42 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -4.64 Total: -128.44 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.07 Total: -30.23 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.88 Total: 49.34 kcal Total: -80.21 2.11 -78.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.135 kcal (2) G-P(sol) polarization free energy of solvation -80.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds