Wall clock time and date at job start Thu Apr 9 2020 13:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.59164 * 2 1 4 4 C 1.53195 * 109.58503 * 239.70943 * 2 1 3 5 5 C 1.53045 * 109.31287 * 185.57776 * 4 2 1 6 6 C 1.53040 * 109.53679 * 61.36955 * 5 4 2 7 7 H 1.09000 * 109.50047 * 58.61695 * 6 5 4 8 8 N 1.46491 * 109.49845 * 178.68566 * 6 5 4 9 9 C 1.34781 * 120.00118 * 204.93758 * 8 6 5 10 10 O 1.21629 * 120.00024 * 359.97438 * 9 8 6 11 11 C 1.47263 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46690 * 126.94032 * 359.97438 * 11 9 8 13 13 C 1.34479 * 106.33323 * 180.02562 * 12 11 9 14 14 N 1.36457 * 108.85656 * 359.73947 * 13 12 11 15 15 H 0.96996 * 124.84942 * 180.30705 * 14 13 12 16 16 C 1.34658 * 110.29269 * 0.44416 * 14 13 12 17 17 C 1.53194 * 109.33970 * 298.65387 * 6 5 4 18 18 N 1.46933 * 108.77495 * 54.58371 * 17 6 5 19 19 C 1.36933 * 120.60412 * 126.42632 * 18 17 6 20 20 H 1.08003 * 119.99662 * 209.57068 * 19 18 17 21 21 C 1.38803 * 120.00167 * 29.56850 * 19 18 17 22 22 N 1.31623 * 120.00015 * 16.11588 * 21 19 18 23 23 Si 1.86802 * 120.00281 * 196.11136 * 21 19 18 24 24 H 1.48494 * 109.47260 * 94.01849 * 23 21 19 25 25 H 1.48498 * 109.47344 * 214.02186 * 23 21 19 26 26 H 1.48504 * 109.46651 * 334.01760 * 23 21 19 27 27 H 1.09000 * 109.47184 * 180.28989 * 1 2 3 28 28 H 1.09001 * 109.47054 * 300.28595 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.28696 * 1 2 3 30 30 H 1.09005 * 109.49316 * 65.63288 * 4 2 1 31 31 H 1.08997 * 109.49750 * 305.53381 * 4 2 1 32 32 H 1.09002 * 109.45807 * 301.35186 * 5 4 2 33 33 H 1.08991 * 109.45025 * 181.38147 * 5 4 2 34 34 H 0.96999 * 120.00499 * 24.93270 * 8 6 5 35 35 H 1.08004 * 126.83281 * 0.02775 * 12 11 9 36 36 H 1.08001 * 125.57365 * 179.97438 * 13 12 11 37 37 H 1.07999 * 125.79540 * 179.83308 * 16 14 13 38 38 H 1.08999 * 109.58732 * 174.40711 * 17 6 5 39 39 H 1.09007 * 109.58282 * 294.82903 * 17 6 5 40 40 H 0.97002 * 119.99812 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7280 -1.2463 5 6 3.5675 -0.8467 -1.1712 6 6 3.9569 -1.6659 0.0615 7 1 3.4987 -2.6532 0.0018 8 7 5.4141 -1.8056 0.1154 9 6 5.9676 -2.8486 0.7653 10 8 5.2572 -3.6736 1.3076 11 6 7.4325 -2.9893 0.8191 12 6 8.4270 -2.0909 0.2226 13 6 9.6317 -2.6082 0.5218 14 7 9.4536 -3.7444 1.2563 15 1 10.1704 -4.3008 1.5990 16 6 8.1407 -3.9843 1.4346 17 6 3.4649 -0.9494 1.3230 18 7 2.0225 -0.7011 1.1937 19 6 1.1537 -1.1158 2.1675 20 1 0.1384 -1.3782 1.9091 21 6 1.5778 -1.1989 3.4865 22 7 2.6849 -0.5936 3.8612 23 14 0.5775 -2.1698 4.7299 24 1 1.1095 -3.5531 4.8215 25 1 0.6700 -1.5148 6.0594 26 1 -0.8425 -2.2131 4.2972 27 1 -0.3633 -1.0276 0.0052 28 1 -0.3633 0.5183 0.8874 29 1 -0.3633 0.5094 -0.8926 30 1 1.7660 -0.1643 -2.1370 31 1 1.6029 -1.7238 -1.2933 32 1 4.0061 0.1486 -1.0991 33 1 3.9376 -1.3426 -2.0684 34 1 5.9808 -1.1476 -0.3168 35 1 8.2306 -1.1927 -0.3441 36 1 10.5844 -2.1905 0.2318 37 1 7.7187 -4.8182 1.9759 38 1 3.6516 -1.5758 2.1953 39 1 3.9902 -0.0006 1.4326 40 1 2.9815 -0.6521 4.7829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071526498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:23 Heat of formation + Delta-G solvation = 26.924004 kcal Electronic energy + Delta-G solvation = -21934.402237 eV Core-core repulsion = 18750.244159 eV Total energy + Delta-G solvation = -3184.158078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00534 -38.89697 -37.30869 -34.17982 -32.70470 -31.36708 -30.12591 -29.68384 -29.02310 -25.95702 -24.90554 -22.69539 -22.04693 -20.75247 -20.17494 -19.43179 -19.00286 -18.48510 -16.30553 -15.75990 -15.35538 -14.88335 -14.48172 -13.87074 -13.82034 -13.69386 -13.55959 -13.27218 -13.20816 -12.97331 -12.58509 -12.29783 -11.98719 -11.70691 -11.34651 -11.03010 -10.79180 -10.64592 -10.39035 -10.30046 -10.16066 -9.87082 -9.63408 -9.32704 -9.21204 -8.82007 -8.41320 -8.31876 -8.20173 -6.50468 -5.64234 -3.08698 2.00960 2.46607 3.17090 3.49196 3.55811 3.56787 3.91508 4.06848 4.62528 4.92653 5.16122 5.30988 5.45878 5.48403 5.50640 5.61896 5.68352 5.79364 5.87585 6.07867 6.11722 6.22325 6.36742 6.42340 6.48510 6.55090 6.64118 6.72464 6.74594 6.87900 6.91164 7.13191 7.18333 7.22465 7.40962 7.47149 7.87159 7.96239 8.22518 8.60616 8.95629 9.34714 9.99271 10.55029 11.43702 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.005526 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.805467 B = 5065.697487 C = 6265.314996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.119 3.881 7 H 0.080 0.920 8 N -0.716 5.716 9 C 0.584 3.416 10 O -0.547 6.547 11 C -0.223 4.223 12 C -0.170 4.170 13 C -0.023 4.023 14 N -0.558 5.558 15 H 0.415 0.585 16 C 0.068 3.932 17 C 0.169 3.831 18 N -0.584 5.584 19 C -0.253 4.253 20 H 0.070 0.930 21 C 0.006 3.994 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.279 1.279 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.391 0.609 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.093 0.907 39 H 0.016 0.984 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.899 -2.238 -9.773 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.099 0.901 8 N -0.365 5.365 9 C 0.371 3.629 10 O -0.425 6.425 11 C -0.233 4.233 12 C -0.195 4.195 13 C -0.151 4.151 14 N -0.152 5.152 15 H 0.251 0.749 16 C -0.068 4.068 17 C 0.042 3.958 18 N -0.307 5.307 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.543 5.543 23 Si 0.729 3.271 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.204 1.204 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.224 0.776 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.193 0.807 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.519 -2.855 -9.174 15.781 hybrid contribution 0.333 -0.312 0.665 0.806 sum 12.852 -3.167 -8.509 15.735 Atomic orbital electron populations 1.21800 0.96083 1.01394 1.00081 1.20478 0.92986 0.93530 0.87139 0.95830 1.22047 0.94440 1.01263 0.98829 1.21676 0.97260 0.99630 0.96850 1.21917 0.78109 1.00695 0.97972 0.90145 1.45833 1.08160 1.26690 1.55848 1.17337 0.86078 0.81281 0.78165 1.90803 1.63099 1.42783 1.45821 1.20575 0.93029 0.99854 1.09833 1.22072 0.91306 1.00986 1.05109 1.21719 0.99664 0.90952 1.02772 1.41609 1.07401 1.22602 1.43637 0.74874 1.21847 0.82388 1.00725 1.01853 1.21073 0.83369 0.96861 0.94473 1.44038 1.02722 1.64657 1.19320 1.19146 0.94976 1.38011 0.86080 0.91260 1.25071 0.97846 0.99341 0.97003 1.70024 1.24311 1.43372 1.16591 0.86330 0.79679 0.80191 0.80892 1.21395 1.21922 1.20416 0.92801 0.92062 0.94412 0.92793 0.92107 0.92363 0.93134 0.77592 0.83856 0.81658 0.80671 0.88925 0.96574 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.95 37.16 0.30 -2.34 16 2 C 0.17 3.50 3.50 -67.59 -0.24 3.27 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.24 5.37 -26.61 -0.14 -2.38 16 5 C -0.12 -1.98 5.36 -26.69 -0.14 -2.12 16 6 C 0.12 2.45 2.60 -67.81 -0.18 2.27 16 7 H 0.08 1.89 7.58 -51.93 -0.39 1.49 16 8 N -0.72 -12.91 5.08 -54.82 -0.28 -13.18 16 9 C 0.58 11.46 7.78 -12.59 -0.10 11.36 16 10 O -0.55 -13.16 16.58 5.25 0.09 -13.07 16 11 C -0.22 -3.46 6.29 -103.35 -0.65 -4.11 16 12 C -0.17 -2.05 10.56 -37.50 -0.40 -2.44 16 13 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 14 N -0.56 -5.08 5.90 -12.85 -0.08 -5.16 16 15 H 0.42 2.20 8.96 -40.82 -0.37 1.84 16 16 C 0.07 0.87 11.69 -16.85 -0.20 0.67 16 17 C 0.17 4.29 4.86 -3.71 -0.02 4.27 16 18 N -0.58 -15.06 2.99 -164.76 -0.49 -15.55 16 19 C -0.25 -7.12 8.58 -15.06 -0.13 -7.25 16 20 H 0.07 1.90 6.22 -52.48 -0.33 1.57 16 21 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 22 N -0.90 -27.44 11.25 55.49 0.62 -26.81 16 23 Si 0.90 22.95 29.58 -169.99 -5.03 17.92 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.05 1.06 7.40 -51.93 -0.38 0.68 16 28 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 5.73 7.73 -40.82 -0.32 5.42 16 35 H 0.14 1.44 7.70 -52.48 -0.40 1.04 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.09 2.77 6.15 -51.93 -0.32 2.45 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -35.43 324.86 -8.29 -43.72 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.85 Total: 6.35 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.18 Total: 0.89 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.22 Total: -60.70 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.43 -8.29 -43.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.642 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds