Wall clock time and date at job start Thu Apr 9 2020 13:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.59164 * 2 1 4 4 C 1.53195 * 109.58503 * 239.70943 * 2 1 3 5 5 C 1.53045 * 109.31287 * 185.57776 * 4 2 1 6 6 C 1.53040 * 109.53679 * 61.36955 * 5 4 2 7 7 H 1.09000 * 109.50047 * 58.61695 * 6 5 4 8 8 N 1.46491 * 109.49845 * 178.68566 * 6 5 4 9 9 C 1.34781 * 120.00118 * 204.93758 * 8 6 5 10 10 O 1.21629 * 120.00024 * 359.97438 * 9 8 6 11 11 C 1.47263 * 120.00305 * 179.97438 * 9 8 6 12 12 C 1.46690 * 126.94032 * 359.97438 * 11 9 8 13 13 C 1.34479 * 106.33323 * 180.02562 * 12 11 9 14 14 N 1.36457 * 108.85656 * 359.73947 * 13 12 11 15 15 H 0.96996 * 124.84942 * 180.30705 * 14 13 12 16 16 C 1.34658 * 110.29269 * 0.44416 * 14 13 12 17 17 C 1.53194 * 109.33970 * 298.65387 * 6 5 4 18 18 N 1.46933 * 108.77495 * 54.58371 * 17 6 5 19 19 C 1.36933 * 120.60412 * 126.42632 * 18 17 6 20 20 H 1.08003 * 119.99662 * 209.57068 * 19 18 17 21 21 C 1.38803 * 120.00167 * 29.56850 * 19 18 17 22 22 N 1.31623 * 120.00015 * 16.11588 * 21 19 18 23 23 Si 1.86802 * 120.00281 * 196.11136 * 21 19 18 24 24 H 1.48494 * 109.47260 * 94.01849 * 23 21 19 25 25 H 1.48498 * 109.47344 * 214.02186 * 23 21 19 26 26 H 1.48504 * 109.46651 * 334.01760 * 23 21 19 27 27 H 1.09000 * 109.47184 * 180.28989 * 1 2 3 28 28 H 1.09001 * 109.47054 * 300.28595 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.28696 * 1 2 3 30 30 H 1.09005 * 109.49316 * 65.63288 * 4 2 1 31 31 H 1.08997 * 109.49750 * 305.53381 * 4 2 1 32 32 H 1.09002 * 109.45807 * 301.35186 * 5 4 2 33 33 H 1.08991 * 109.45025 * 181.38147 * 5 4 2 34 34 H 0.96999 * 120.00499 * 24.93270 * 8 6 5 35 35 H 1.08004 * 126.83281 * 0.02775 * 12 11 9 36 36 H 1.08001 * 125.57365 * 179.97438 * 13 12 11 37 37 H 1.07999 * 125.79540 * 179.83308 * 16 14 13 38 38 H 1.08999 * 109.58732 * 174.40711 * 17 6 5 39 39 H 1.09007 * 109.58282 * 294.82903 * 17 6 5 40 40 H 0.97002 * 119.99812 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7280 -1.2463 5 6 3.5675 -0.8467 -1.1712 6 6 3.9569 -1.6659 0.0615 7 1 3.4987 -2.6532 0.0018 8 7 5.4141 -1.8056 0.1154 9 6 5.9676 -2.8486 0.7653 10 8 5.2572 -3.6736 1.3076 11 6 7.4325 -2.9893 0.8191 12 6 8.4270 -2.0909 0.2226 13 6 9.6317 -2.6082 0.5218 14 7 9.4536 -3.7444 1.2563 15 1 10.1704 -4.3008 1.5990 16 6 8.1407 -3.9843 1.4346 17 6 3.4649 -0.9494 1.3230 18 7 2.0225 -0.7011 1.1937 19 6 1.1537 -1.1158 2.1675 20 1 0.1384 -1.3782 1.9091 21 6 1.5778 -1.1989 3.4865 22 7 2.6849 -0.5936 3.8612 23 14 0.5775 -2.1698 4.7299 24 1 1.1095 -3.5531 4.8215 25 1 0.6700 -1.5148 6.0594 26 1 -0.8425 -2.2131 4.2972 27 1 -0.3633 -1.0276 0.0052 28 1 -0.3633 0.5183 0.8874 29 1 -0.3633 0.5094 -0.8926 30 1 1.7660 -0.1643 -2.1370 31 1 1.6029 -1.7238 -1.2933 32 1 4.0061 0.1486 -1.0991 33 1 3.9376 -1.3426 -2.0684 34 1 5.9808 -1.1476 -0.3168 35 1 8.2306 -1.1927 -0.3441 36 1 10.5844 -2.1905 0.2318 37 1 7.7187 -4.8182 1.9759 38 1 3.6516 -1.5758 2.1953 39 1 3.9902 -0.0006 1.4326 40 1 2.9815 -0.6521 4.7829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071526498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:22 Heat of formation + Delta-G solvation = 1.036873 kcal Electronic energy + Delta-G solvation = -21935.524787 eV Core-core repulsion = 18750.244159 eV Total energy + Delta-G solvation = -3185.280628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96255 -40.46402 -39.00596 -35.90832 -34.62900 -32.68563 -31.79558 -31.25398 -29.97623 -27.73581 -26.77103 -24.28016 -23.64284 -22.02361 -21.43581 -21.08893 -20.28915 -19.56710 -18.30489 -17.36379 -16.92722 -16.59859 -15.94928 -15.63977 -15.39455 -15.03544 -14.89161 -14.69166 -14.52307 -14.31736 -14.09482 -13.84514 -13.47676 -13.07222 -12.99859 -12.72152 -12.71578 -12.55621 -12.26213 -12.08468 -11.95334 -11.64152 -11.38996 -11.11847 -10.82838 -10.53260 -10.06790 -9.67849 -9.25738 -8.60762 -7.83739 -5.30303 0.83588 1.40204 1.45837 1.51670 1.60982 2.21629 2.50164 2.64195 2.70251 3.32585 3.70850 3.96277 4.09496 4.11644 4.21788 4.31683 4.41816 4.43122 4.56172 4.64370 4.73301 4.83118 4.91655 5.01680 5.02532 5.08372 5.17225 5.20704 5.33267 5.38953 5.55739 5.56916 5.64035 5.71919 5.79548 5.84207 5.98896 6.42965 6.69160 6.83285 7.16949 7.49015 7.91492 8.41360 9.21408 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.005526 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.805467 B = 5065.697487 C = 6265.314996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.047 0.953 8 N -0.705 5.705 9 C 0.575 3.425 10 O -0.607 6.607 11 C -0.267 4.267 12 C -0.189 4.189 13 C 0.001 3.999 14 N -0.536 5.536 15 H 0.436 0.564 16 C 0.065 3.935 17 C 0.182 3.818 18 N -0.604 5.604 19 C -0.251 4.251 20 H 0.076 0.924 21 C -0.055 4.055 22 N -0.934 5.934 23 Si 0.957 3.043 24 H -0.298 1.298 25 H -0.292 1.292 26 H -0.259 1.259 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.160 0.840 36 H 0.213 0.787 37 H 0.175 0.825 38 H 0.038 0.962 39 H -0.004 1.004 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.376 -1.693 -12.310 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.065 0.935 8 N -0.355 5.355 9 C 0.365 3.635 10 O -0.490 6.490 11 C -0.277 4.277 12 C -0.213 4.213 13 C -0.127 4.127 14 N -0.132 5.132 15 H 0.276 0.724 16 C -0.073 4.073 17 C 0.055 3.945 18 N -0.328 5.328 19 C -0.382 4.382 20 H 0.093 0.907 21 C -0.250 4.250 22 N -0.581 5.581 23 Si 0.786 3.214 24 H -0.226 1.226 25 H -0.219 1.219 26 H -0.183 1.183 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.177 0.823 36 H 0.229 0.771 37 H 0.192 0.808 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.028 -2.283 -11.765 18.450 hybrid contribution -0.047 -0.467 1.415 1.491 sum 13.981 -2.750 -10.350 17.612 Atomic orbital electron populations 1.21731 0.94675 1.01131 1.01081 1.20814 0.94343 0.93359 0.86692 0.96021 1.21958 0.94489 1.00875 0.98376 1.21642 0.97157 0.99890 0.95771 1.21476 0.79453 0.98863 0.97626 0.93460 1.45659 1.07297 1.26948 1.55593 1.18090 0.87940 0.80540 0.76898 1.90754 1.64927 1.44936 1.48384 1.20462 0.91115 1.02847 1.13275 1.22321 0.91211 1.01616 1.06122 1.22400 1.00533 0.89604 1.00163 1.41627 1.06528 1.22645 1.42424 0.72353 1.21875 0.83944 1.00178 1.01284 1.20733 0.83775 0.95073 0.94914 1.44339 1.02498 1.65570 1.20370 1.19510 0.95463 1.36513 0.86683 0.90677 1.25831 0.99197 1.00953 0.99029 1.70186 1.26186 1.45404 1.16278 0.85392 0.79304 0.77963 0.78754 1.22601 1.21906 1.18323 0.93592 0.94343 0.90151 0.88428 0.92987 0.90850 0.89736 0.75373 0.82254 0.77064 0.80751 0.94365 0.98583 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 7.95 71.98 0.57 -4.22 16 2 C 0.15 6.34 3.50 44.97 0.16 6.49 16 3 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.12 -3.85 5.37 30.67 0.16 -3.69 16 5 C -0.11 -3.40 5.36 30.62 0.16 -3.23 16 6 C 0.13 5.61 2.60 45.07 0.12 5.72 16 7 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 8 N -0.70 -26.00 5.08 -445.59 -2.26 -28.26 16 9 C 0.57 23.71 7.78 86.62 0.67 24.39 16 10 O -0.61 -31.48 16.58 -4.12 -0.07 -31.55 16 11 C -0.27 -8.33 6.29 -19.04 -0.12 -8.45 16 12 C -0.19 -4.15 10.56 23.62 0.25 -3.90 16 13 C 0.00 0.02 11.89 83.11 0.99 1.00 16 14 N -0.54 -8.29 5.90 -194.56 -1.15 -9.44 16 15 H 0.44 3.14 8.96 -92.71 -0.83 2.30 16 16 C 0.07 1.66 11.69 83.91 0.98 2.64 16 17 C 0.18 9.72 4.86 86.36 0.42 10.14 16 18 N -0.60 -32.00 2.99 -675.19 -2.02 -34.02 16 19 C -0.25 -14.61 8.58 84.03 0.72 -13.89 16 20 H 0.08 4.19 6.22 -2.91 -0.02 4.17 16 21 C -0.06 -3.34 4.92 84.86 0.42 -2.92 16 22 N -0.93 -60.19 11.25 21.65 0.24 -59.95 16 23 Si 0.96 49.04 29.58 68.60 2.03 51.07 16 24 H -0.30 -15.68 7.11 99.48 0.71 -14.98 16 25 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 26 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 27 H 0.04 1.76 7.40 -2.39 -0.02 1.74 16 28 H 0.04 1.57 7.66 -2.39 -0.02 1.55 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 11.76 7.73 -92.71 -0.72 11.05 16 35 H 0.16 2.81 7.70 -2.91 -0.02 2.79 16 36 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.18 4.33 8.06 -2.91 -0.02 4.30 16 38 H 0.04 2.45 6.15 -2.39 -0.01 2.43 16 39 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -84.64 324.86 1.79 -82.84 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.49 Total: 19.22 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.51 Total: 10.08 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -5.18 Total: -131.66 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.07 Total: -31.55 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.03 Total: 51.07 kcal Total: -84.64 1.79 -82.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.882 kcal (2) G-P(sol) polarization free energy of solvation -84.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds