Wall clock time and date at job start Thu Apr 9 2020 13:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47692 * 2 1 4 4 C 1.50705 * 109.47220 * 240.00255 * 2 1 3 5 5 O 1.21279 * 120.00166 * 240.00490 * 4 2 1 6 6 N 1.34780 * 119.99710 * 60.00014 * 4 2 1 7 7 C 1.46507 * 119.99582 * 180.02562 * 6 4 2 8 8 H 1.08996 * 112.90888 * 26.99411 * 7 6 4 9 9 C 1.53789 * 113.60940 * 158.24385 * 7 6 4 10 10 C 1.53784 * 87.17085 * 89.15603 * 9 7 6 11 11 H 1.08998 * 113.61211 * 139.93744 * 10 9 7 12 12 N 1.46497 * 113.61137 * 270.75355 * 10 9 7 13 13 C 1.36934 * 119.99948 * 274.31961 * 12 10 9 14 14 H 1.07997 * 120.00686 * 0.02562 * 13 12 10 15 15 C 1.38821 * 120.00206 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99520 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00373 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46784 * 60.00254 * 17 15 13 19 19 H 1.48498 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47008 * 300.00474 * 17 15 13 21 21 C 1.53778 * 87.08364 * 25.38840 * 10 9 7 22 22 N 1.46504 * 109.47377 * 120.00534 * 2 1 3 23 23 C 1.36344 * 125.63321 * 59.68963 * 22 2 1 24 24 C 1.34854 * 108.21413 * 179.83566 * 23 22 2 25 25 C 1.40894 * 107.41552 * 0.42389 * 24 23 22 26 26 C 1.34841 * 107.41658 * 359.73605 * 25 24 23 27 27 H 1.09001 * 109.47323 * 300.00000 * 1 2 3 28 28 H 1.09001 * 109.47503 * 59.99488 * 1 2 3 29 29 H 1.09006 * 109.47751 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00326 * 359.97438 * 6 4 2 31 31 H 1.08991 * 113.61128 * 334.56351 * 9 7 6 32 32 H 1.09000 * 113.60753 * 203.74238 * 9 7 6 33 33 H 0.96999 * 120.00099 * 94.32245 * 12 10 9 34 34 H 0.97003 * 120.00055 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.61678 * 89.11477 * 21 10 9 36 36 H 1.09005 * 113.61561 * 220.02200 * 21 10 9 37 37 H 1.08000 * 125.89338 * 359.96535 * 23 22 2 38 38 H 1.07995 * 126.28966 * 180.15994 * 24 23 22 39 39 H 1.07997 * 126.28573 * 179.73620 * 25 24 23 40 40 H 1.08010 * 125.88827 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 1 2.3853 -2.0003 -3.4807 9 6 1.3564 -0.6599 -4.9093 10 6 2.2809 0.5424 -5.1640 11 1 2.5412 0.6783 -6.2137 12 7 1.8237 1.7796 -4.5264 13 6 0.9197 2.5855 -5.1654 14 1 0.5433 2.3089 -6.1392 15 6 0.4868 3.7581 -4.5616 16 7 0.9458 4.0955 -3.3750 17 14 -0.7459 4.8579 -5.4335 18 1 -1.9979 4.0987 -5.6813 19 1 -1.0436 6.0387 -4.5836 20 1 -0.1766 5.3101 -6.7284 21 6 3.3516 -0.2099 -4.3562 22 7 2.0183 -0.6907 1.1961 23 6 1.7559 -1.9869 1.5277 24 6 2.3799 -2.2589 2.6918 25 6 3.0441 -1.0848 3.0986 26 6 2.8055 -0.1419 2.1646 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0277 -0.0005 30 1 1.1487 0.5386 -2.5436 31 1 0.3254 -0.3799 -4.6936 32 1 1.4338 -1.4386 -5.6681 33 1 2.1614 2.0279 -3.6517 34 1 0.6437 4.9151 -2.9532 35 1 3.9754 -0.8663 -4.9630 36 1 3.9312 0.4334 -3.6940 37 1 1.1539 -2.6774 0.9556 38 1 2.3687 -3.2019 3.2180 39 1 3.6356 -0.9626 3.9938 40 1 3.1746 0.8730 2.1807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021971830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:03 Heat of formation + Delta-G solvation = 54.017748 kcal Electronic energy + Delta-G solvation = -21821.817352 eV Core-core repulsion = 18638.834147 eV Total energy + Delta-G solvation = -3182.983205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22989 -39.74103 -37.95982 -34.22065 -33.72508 -32.50171 -30.00708 -29.14476 -28.51042 -25.39289 -25.01851 -24.20306 -22.61702 -20.75484 -20.26847 -19.50001 -18.86066 -17.53684 -17.26246 -16.72528 -15.66251 -15.08053 -14.83436 -14.63131 -14.16662 -13.80676 -13.60050 -13.44381 -13.25465 -13.21189 -12.40195 -12.27648 -12.07971 -12.06148 -11.90395 -11.83677 -11.54056 -11.50912 -10.99241 -10.90697 -10.44006 -10.33309 -9.90016 -9.70798 -9.65554 -9.04232 -8.68317 -8.43014 -7.91972 -7.16508 -5.96560 -3.26283 2.40987 2.69525 2.91703 3.27206 3.32723 3.38568 3.38816 3.50257 4.43148 4.63968 4.81643 4.87818 5.03456 5.11509 5.17225 5.34509 5.40546 5.42236 5.49551 5.55849 5.66066 5.76159 5.80965 5.84043 5.96619 6.05765 6.19896 6.28330 6.45660 6.49404 6.50230 6.56893 6.74886 6.97476 7.19596 7.43162 7.50430 7.57094 7.81032 8.22901 8.38873 9.34038 9.88340 10.23586 11.25658 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.004811 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.274699 B = 5818.440027 C = 6721.629057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 H 0.127 0.873 4 C 0.504 3.496 5 O -0.534 6.534 6 N -0.693 5.693 7 C 0.127 3.873 8 H 0.089 0.911 9 C -0.177 4.177 10 C 0.162 3.838 11 H 0.053 0.947 12 N -0.710 5.710 13 C -0.244 4.244 14 H 0.073 0.927 15 C -0.009 4.009 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.163 4.163 22 N -0.428 5.428 23 C 0.017 3.983 24 C -0.214 4.214 25 C -0.202 4.202 26 C -0.017 4.017 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.416 0.584 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.384 0.616 34 H 0.258 0.742 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 -9.021 6.497 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.007 3.993 3 H 0.145 0.855 4 C 0.287 3.713 5 O -0.411 6.411 6 N -0.347 5.347 7 C 0.021 3.979 8 H 0.107 0.893 9 C -0.219 4.219 10 C 0.050 3.950 11 H 0.071 0.929 12 N -0.351 5.351 13 C -0.375 4.375 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.582 5.582 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.203 4.203 22 N -0.104 5.104 23 C -0.113 4.113 24 C -0.238 4.238 25 C -0.227 4.227 26 C -0.146 4.146 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.218 0.782 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.444 -9.414 6.154 11.256 hybrid contribution -0.741 1.176 -0.281 1.418 sum -0.298 -8.238 5.874 10.122 Atomic orbital electron populations 1.22115 0.91137 1.03657 1.04615 1.21314 0.96972 0.97823 0.83215 0.85499 1.20536 0.80812 0.84991 0.84916 1.90724 1.37631 1.26148 1.86569 1.45867 1.52567 1.32111 1.04141 1.21772 0.95961 0.95933 0.84205 0.89301 1.24057 1.00866 1.01022 0.95941 1.21213 0.91770 0.86217 0.95758 0.92883 1.42237 1.51336 1.20449 1.21114 1.19202 1.16465 1.00894 1.00912 0.90939 1.24734 1.00589 0.98241 0.96963 1.69621 1.47272 1.25832 1.15465 0.86244 0.81022 0.80119 0.78651 1.21186 1.21649 1.21184 1.23746 0.97056 0.99731 0.99720 1.43761 1.39365 1.10501 1.16752 1.21607 1.05545 0.85796 0.98339 1.20779 1.05433 0.99154 0.98461 1.20788 1.06823 0.93906 1.01175 1.21802 1.01437 0.99896 0.91489 0.90548 0.89400 0.91465 0.74458 0.90618 0.90015 0.78178 0.93248 0.89418 0.91345 0.83020 0.85174 0.85072 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.13 37.15 0.34 -1.53 16 2 C 0.11 1.57 3.36 -69.08 -0.23 1.34 16 3 H 0.13 1.67 8.06 -51.93 -0.42 1.25 16 4 C 0.50 8.24 7.11 -10.98 -0.08 8.16 16 5 O -0.53 -10.32 15.11 5.56 0.08 -10.24 16 6 N -0.69 -11.22 4.86 -52.92 -0.26 -11.48 16 7 C 0.13 2.02 4.29 -67.02 -0.29 1.74 16 8 H 0.09 1.43 7.55 -51.93 -0.39 1.03 16 9 C -0.18 -2.82 7.61 -25.91 -0.20 -3.02 16 10 C 0.16 2.96 4.53 -67.12 -0.30 2.65 16 11 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 12 N -0.71 -15.89 4.41 -52.64 -0.23 -16.12 16 13 C -0.24 -6.15 9.99 -15.06 -0.15 -6.30 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -25.41 13.06 55.49 0.72 -24.69 16 17 Si 0.91 20.84 29.55 -169.99 -5.02 15.82 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.16 -2.64 7.58 -25.83 -0.20 -2.83 16 22 N -0.43 -6.26 2.40 -111.26 -0.27 -6.53 16 23 C 0.02 0.25 9.57 -16.75 -0.16 0.09 16 24 C -0.21 -3.02 10.86 -39.78 -0.43 -3.46 16 25 C -0.20 -2.78 10.86 -39.78 -0.43 -3.21 16 26 C -0.02 -0.24 11.39 -16.76 -0.19 -0.43 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.06 7.56 -51.93 -0.39 0.67 16 29 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 30 H 0.42 7.13 6.62 -40.82 -0.27 6.86 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.38 9.04 7.02 -40.82 -0.29 8.75 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -29.31 334.42 -8.29 -37.60 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -5.94 Total: 17.72 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.42 Total: -7.12 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.03 Total: -58.81 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.31 -8.29 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021971830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.615 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds