Wall clock time and date at job start Thu Apr 9 2020 13:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47692 * 2 1 4 4 C 1.50705 * 109.47220 * 240.00255 * 2 1 3 5 5 O 1.21279 * 120.00166 * 240.00490 * 4 2 1 6 6 N 1.34780 * 119.99710 * 60.00014 * 4 2 1 7 7 C 1.46507 * 119.99582 * 180.02562 * 6 4 2 8 8 H 1.08996 * 112.90888 * 26.99411 * 7 6 4 9 9 C 1.53789 * 113.60940 * 158.24385 * 7 6 4 10 10 C 1.53784 * 87.17085 * 89.15603 * 9 7 6 11 11 H 1.08998 * 113.61211 * 139.93744 * 10 9 7 12 12 N 1.46497 * 113.61137 * 270.75355 * 10 9 7 13 13 C 1.36934 * 119.99948 * 274.31961 * 12 10 9 14 14 H 1.07997 * 120.00686 * 0.02562 * 13 12 10 15 15 C 1.38821 * 120.00206 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99520 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00373 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46784 * 60.00254 * 17 15 13 19 19 H 1.48498 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47008 * 300.00474 * 17 15 13 21 21 C 1.53778 * 87.08364 * 25.38840 * 10 9 7 22 22 N 1.46504 * 109.47377 * 120.00534 * 2 1 3 23 23 C 1.36344 * 125.63321 * 59.68963 * 22 2 1 24 24 C 1.34854 * 108.21413 * 179.83566 * 23 22 2 25 25 C 1.40894 * 107.41552 * 0.42389 * 24 23 22 26 26 C 1.34841 * 107.41658 * 359.73605 * 25 24 23 27 27 H 1.09001 * 109.47323 * 300.00000 * 1 2 3 28 28 H 1.09001 * 109.47503 * 59.99488 * 1 2 3 29 29 H 1.09006 * 109.47751 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00326 * 359.97438 * 6 4 2 31 31 H 1.08991 * 113.61128 * 334.56351 * 9 7 6 32 32 H 1.09000 * 113.60753 * 203.74238 * 9 7 6 33 33 H 0.96999 * 120.00099 * 94.32245 * 12 10 9 34 34 H 0.97003 * 120.00055 * 179.97438 * 16 15 13 35 35 H 1.09001 * 113.61678 * 89.11477 * 21 10 9 36 36 H 1.09005 * 113.61561 * 220.02200 * 21 10 9 37 37 H 1.08000 * 125.89338 * 359.96535 * 23 22 2 38 38 H 1.07995 * 126.28966 * 180.15994 * 24 23 22 39 39 H 1.07997 * 126.28573 * 179.73620 * 25 24 23 40 40 H 1.08010 * 125.88827 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9407 -3.6508 8 1 2.3853 -2.0003 -3.4807 9 6 1.3564 -0.6599 -4.9093 10 6 2.2809 0.5424 -5.1640 11 1 2.5412 0.6783 -6.2137 12 7 1.8237 1.7796 -4.5264 13 6 0.9197 2.5855 -5.1654 14 1 0.5433 2.3089 -6.1392 15 6 0.4868 3.7581 -4.5616 16 7 0.9458 4.0955 -3.3750 17 14 -0.7459 4.8579 -5.4335 18 1 -1.9979 4.0987 -5.6813 19 1 -1.0436 6.0387 -4.5836 20 1 -0.1766 5.3101 -6.7284 21 6 3.3516 -0.2099 -4.3562 22 7 2.0183 -0.6907 1.1961 23 6 1.7559 -1.9869 1.5277 24 6 2.3799 -2.2589 2.6918 25 6 3.0441 -1.0848 3.0986 26 6 2.8055 -0.1419 2.1646 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0277 -0.0005 30 1 1.1487 0.5386 -2.5436 31 1 0.3254 -0.3799 -4.6936 32 1 1.4338 -1.4386 -5.6681 33 1 2.1614 2.0279 -3.6517 34 1 0.6437 4.9151 -2.9532 35 1 3.9754 -0.8663 -4.9630 36 1 3.9312 0.4334 -3.6940 37 1 1.1539 -2.6774 0.9556 38 1 2.3687 -3.2019 3.2180 39 1 3.6356 -0.9626 3.9938 40 1 3.1746 0.8730 2.1807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021971830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:03 Heat of formation + Delta-G solvation = 37.408998 kcal Electronic energy + Delta-G solvation = -21822.537561 eV Core-core repulsion = 18638.834147 eV Total energy + Delta-G solvation = -3183.703415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34627 -41.04240 -39.33085 -35.50646 -35.34732 -33.91474 -31.77551 -30.22337 -29.57185 -26.80672 -26.34162 -25.73478 -24.04375 -22.01421 -21.33993 -20.70510 -20.20168 -19.20535 -18.57153 -17.99367 -16.98555 -16.60206 -16.28890 -15.94817 -15.61221 -15.15236 -15.01861 -14.87295 -14.49086 -14.39751 -13.53270 -13.40011 -13.36696 -13.22725 -13.10301 -13.05832 -12.95197 -12.75504 -12.62512 -12.55138 -12.18108 -11.91855 -11.71442 -11.10528 -11.03022 -10.82121 -10.03505 -9.52205 -9.00385 -8.99081 -7.93458 -5.21642 1.29158 1.41253 1.51841 1.52917 1.58344 1.81962 2.20226 2.30500 2.57727 3.38809 3.45136 3.66536 3.72729 3.80032 3.85172 3.96611 4.12157 4.19832 4.37628 4.38881 4.52527 4.58055 4.75184 4.79109 4.82440 4.87750 4.95715 5.00816 5.05207 5.22590 5.35919 5.41814 5.44073 5.53591 5.67723 6.13930 6.29566 6.35176 6.38415 6.54191 7.07587 7.36541 8.08311 8.33575 9.28751 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.004811 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.274699 B = 5818.440027 C = 6721.629057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.116 3.884 3 H 0.133 0.867 4 C 0.505 3.495 5 O -0.565 6.565 6 N -0.692 5.692 7 C 0.125 3.875 8 H 0.093 0.907 9 C -0.159 4.159 10 C 0.145 3.855 11 H 0.054 0.946 12 N -0.718 5.718 13 C -0.241 4.241 14 H 0.075 0.925 15 C -0.061 4.061 16 N -0.962 5.962 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.285 1.285 21 C -0.152 4.152 22 N -0.434 5.434 23 C -0.002 4.002 24 C -0.223 4.223 25 C -0.211 4.211 26 C -0.031 4.031 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.412 0.588 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.375 0.625 34 H 0.252 0.748 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -9.698 6.155 11.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.010 3.990 3 H 0.151 0.849 4 C 0.290 3.710 5 O -0.444 6.444 6 N -0.344 5.344 7 C 0.019 3.981 8 H 0.111 0.889 9 C -0.200 4.200 10 C 0.036 3.964 11 H 0.072 0.928 12 N -0.359 5.359 13 C -0.372 4.372 14 H 0.093 0.907 15 C -0.254 4.254 16 N -0.612 5.612 17 Si 0.794 3.206 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.212 1.212 21 C -0.191 4.191 22 N -0.110 5.110 23 C -0.132 4.132 24 C -0.247 4.247 25 C -0.236 4.236 26 C -0.159 4.159 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.251 0.749 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.208 0.792 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.069 0.931 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.235 -10.125 5.778 11.660 hybrid contribution -0.613 1.320 -0.214 1.472 sum -0.378 -8.804 5.564 10.422 Atomic orbital electron populations 1.22062 0.89621 1.03990 1.05006 1.21347 0.98086 0.97558 0.82057 0.84910 1.20918 0.80079 0.84529 0.85481 1.90702 1.39105 1.27591 1.87009 1.45893 1.52250 1.31781 1.04453 1.21840 0.95911 0.96073 0.84226 0.88864 1.23930 0.99255 1.00288 0.96485 1.21453 0.93611 0.85606 0.95768 0.92769 1.42314 1.51059 1.21698 1.20834 1.19494 1.16040 1.00914 1.00786 0.90718 1.25352 1.02619 0.99711 0.97758 1.69744 1.48735 1.26018 1.16670 0.85356 0.79465 0.78340 0.77392 1.20488 1.22488 1.21163 1.23736 0.96711 0.99366 0.99257 1.43872 1.39646 1.10612 1.16908 1.21826 1.06281 0.86159 0.98923 1.21117 1.05117 1.00065 0.98413 1.21133 1.06878 0.93682 1.01883 1.22268 1.01275 1.00977 0.91425 0.89383 0.89679 0.91158 0.74918 0.92086 0.86866 0.79154 0.93930 0.86502 0.93139 0.82726 0.83576 0.83131 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.13 71.98 0.66 -2.77 16 2 C 0.12 3.16 3.36 44.24 0.15 3.31 16 3 H 0.13 3.44 8.06 -2.39 -0.02 3.42 16 4 C 0.50 16.31 7.11 87.66 0.62 16.94 16 5 O -0.57 -21.63 15.11 -3.03 -0.05 -21.68 16 6 N -0.69 -22.03 4.86 -439.72 -2.14 -24.16 16 7 C 0.12 3.80 4.29 45.58 0.20 4.00 16 8 H 0.09 2.81 7.55 -2.39 -0.02 2.80 16 9 C -0.16 -4.71 7.61 31.12 0.24 -4.47 16 10 C 0.15 5.10 4.53 45.52 0.21 5.30 16 11 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 12 N -0.72 -31.84 4.41 -320.45 -1.41 -33.25 16 13 C -0.24 -12.00 9.99 84.04 0.84 -11.16 16 14 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 15 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 16 N -0.96 -52.64 13.06 21.65 0.28 -52.36 16 17 Si 0.96 42.66 29.55 68.60 2.03 44.68 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.15 -4.64 7.58 31.18 0.24 -4.41 16 22 N -0.43 -12.40 2.40 -505.91 -1.21 -13.61 16 23 C 0.00 -0.06 9.57 83.21 0.80 0.74 16 24 C -0.22 -6.07 10.86 22.14 0.24 -5.83 16 25 C -0.21 -5.54 10.86 22.14 0.24 -5.30 16 26 C -0.03 -0.83 11.39 83.21 0.95 0.12 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 2.01 7.56 -2.39 -0.02 1.99 16 29 H 0.07 1.56 7.91 -2.38 -0.02 1.54 16 30 H 0.41 14.07 6.62 -92.71 -0.61 13.45 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.38 17.76 7.02 -92.71 -0.65 17.11 16 34 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.18 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -61.25 334.42 3.12 -58.13 By element: Atomic # 1 Polarization: 48.71 SS G_CDS: -0.22 Total: 48.49 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.84 Total: -6.23 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.48 Total: -123.39 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.68 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -61.25 3.12 -58.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021971830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.542 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds