Wall clock time and date at job start Thu Apr 9 2020 13:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00363 * 2 1 4 4 C 1.38763 * 120.05300 * 0.25102 * 3 2 1 5 5 C 1.38122 * 119.94452 * 180.27631 * 4 3 2 6 6 C 1.50697 * 119.96978 * 179.74838 * 5 4 3 7 7 C 1.38282 * 120.05404 * 359.72785 * 5 4 3 8 8 C 1.38245 * 120.11611 * 0.02562 * 7 5 4 9 9 C 1.38169 * 120.05064 * 359.97438 * 8 7 5 10 10 C 1.50708 * 120.02539 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46904 * 145.00074 * 10 9 8 12 12 C 1.53003 * 109.46876 * 265.00207 * 10 9 8 13 13 N 1.46903 * 109.46830 * 25.00289 * 10 9 8 14 14 C 1.46898 * 110.99673 * 155.00071 * 13 10 9 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47242 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99967 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00542 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99408 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99859 * 21 19 17 24 24 H 1.48498 * 109.46692 * 239.99831 * 21 19 17 25 25 H 1.08993 * 109.47089 * 60.00559 * 1 2 3 26 26 H 1.09008 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46754 * 299.99707 * 1 2 3 28 28 H 1.08002 * 120.02797 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47183 * 269.97847 * 6 5 4 30 30 H 1.08993 * 109.47509 * 29.97505 * 6 5 4 31 31 H 1.09003 * 109.46775 * 149.98234 * 6 5 4 32 32 H 1.08006 * 119.94567 * 179.97438 * 7 5 4 33 33 H 1.08002 * 119.97467 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46579 * 179.97438 * 12 10 9 35 35 H 1.08994 * 109.47006 * 299.99855 * 12 10 9 36 36 H 1.08998 * 109.47007 * 59.99936 * 12 10 9 37 37 H 1.00895 * 111.00497 * 31.03993 * 13 10 9 38 38 H 1.09001 * 109.47062 * 59.99745 * 14 13 10 39 39 H 1.08993 * 109.47084 * 299.99192 * 14 13 10 40 40 H 1.09001 * 109.46801 * 300.00064 * 15 14 13 41 41 H 1.09001 * 109.46998 * 59.99660 * 15 14 13 42 42 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 44 44 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 1.1019 4.8698 -0.0005 7 6 3.3019 3.6758 -0.0059 8 6 4.0560 2.5171 -0.0060 9 6 3.4311 1.2848 -0.0002 10 6 4.2538 0.0221 -0.0009 11 1 3.7494 -0.7404 0.5927 12 6 4.4203 -0.4772 -1.4375 13 7 5.5754 0.2985 0.5779 14 6 6.1704 -0.9222 1.1381 15 6 7.5431 -0.5954 1.7296 16 6 8.1626 -1.8666 2.3136 17 6 9.5143 -1.5446 2.8968 18 1 9.8934 -0.5341 2.8555 19 6 10.2670 -2.5398 3.4832 20 7 9.8051 -3.7701 3.5340 21 14 11.9423 -2.1405 4.2067 22 1 12.2287 -0.6950 4.0234 23 1 11.9462 -2.4666 5.6554 24 1 12.9837 -2.9425 3.5159 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.2128 2.3204 0.0098 29 1 0.9006 5.1723 -1.0282 30 1 0.1593 4.6924 0.5171 31 1 1.6535 5.6597 0.5093 32 1 3.7922 4.6381 -0.0108 33 1 5.1344 2.5752 -0.0106 34 1 5.0157 -1.3902 -1.4380 35 1 3.4397 -0.6822 -1.8669 36 1 4.9246 0.2854 -2.0310 37 1 5.5201 1.0264 1.2744 38 1 6.2827 -1.6665 0.3497 39 1 5.5219 -1.3165 1.9203 40 1 8.1914 -0.2012 0.9470 41 1 7.4311 0.1491 2.5179 42 1 7.5140 -2.2603 3.0962 43 1 8.2745 -2.6113 1.5256 44 1 10.3345 -4.4703 3.9468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531959774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:37 Heat of formation + Delta-G solvation = -35.942294 kcal Electronic energy + Delta-G solvation = -21009.696285 eV Core-core repulsion = 17926.352463 eV Total energy + Delta-G solvation = -3083.343822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54514 -37.92920 -36.84418 -34.16569 -32.64450 -31.21906 -30.32249 -29.21120 -27.96291 -26.68614 -25.73299 -22.90274 -22.60012 -21.68818 -20.30181 -19.96419 -17.70372 -16.60950 -16.26206 -16.01928 -15.94612 -15.08324 -14.53686 -14.37664 -14.20963 -14.03122 -13.85251 -13.76512 -13.42857 -12.58859 -12.50962 -12.31190 -12.25243 -12.06437 -11.83782 -11.71363 -11.53215 -11.46069 -11.08153 -11.05541 -10.81642 -10.58458 -10.46610 -10.39141 -9.62576 -9.28237 -8.99349 -8.83503 -8.29754 -8.22270 -8.07824 -5.94761 -3.96497 1.18057 1.32860 3.11157 3.34683 3.41820 3.46613 3.59619 4.36743 4.50064 4.53230 4.72621 4.83021 4.83250 4.89527 5.00122 5.17218 5.23640 5.31353 5.40852 5.41129 5.43939 5.57400 5.58441 5.67346 5.86117 5.89858 5.99043 6.03441 6.08324 6.21211 6.33538 6.38371 6.46054 6.47976 6.69923 6.80241 6.88344 7.20816 7.24088 7.45476 7.71871 7.75361 7.90732 8.06462 8.49853 9.11136 9.67246 11.16819 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.002939 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.403746 B = 9524.947058 C =10131.049813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.055 4.055 6 C -0.114 4.114 7 C -0.157 4.157 8 C -0.065 4.065 9 C -0.118 4.118 10 C 0.131 3.869 11 H 0.054 0.946 12 C -0.129 4.129 13 N -0.686 5.686 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.021 3.979 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.338 0.662 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.476 13.684 -9.159 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.230 4.230 5 C -0.056 4.056 6 C -0.171 4.171 7 C -0.175 4.175 8 C -0.083 4.083 9 C -0.119 4.119 10 C 0.021 3.979 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.318 5.318 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.016 4.016 17 C -0.555 4.555 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.026 13.247 -9.699 26.677 hybrid contribution 0.070 0.082 1.270 1.275 sum -20.956 13.329 -8.429 26.227 Atomic orbital electron populations 1.23037 0.78705 1.03887 1.01108 1.86115 1.21041 1.26778 1.88564 1.18819 0.91677 0.84164 0.96593 1.21007 0.99588 0.91795 1.10580 1.19676 0.94074 0.94363 0.97452 1.20793 0.99257 0.94719 1.02288 1.20970 0.93024 0.98585 1.04959 1.21010 1.00885 0.90500 0.95953 1.19412 0.90230 0.96144 1.06161 1.20214 0.88101 0.92635 0.96926 0.92816 1.21703 1.00881 1.01277 0.94855 1.60746 1.21246 1.10776 1.39058 1.22169 0.96502 0.91018 0.97241 1.21616 0.93342 1.00573 0.98879 1.19069 0.95140 0.91737 0.95672 1.21307 1.02328 0.94910 1.36945 0.92625 1.25038 0.98184 0.95094 0.96298 1.69983 1.37830 1.00728 1.45124 0.86543 0.84296 0.78462 0.78759 1.19719 1.21089 1.21044 0.92816 0.88268 0.92815 0.85739 0.91130 0.91764 0.91320 0.85928 0.84016 0.92276 0.92899 0.92234 0.84383 0.91395 0.95771 0.92549 0.93734 0.96838 0.96571 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.69 9.64 -19.42 -0.19 -3.88 16 3 C 0.13 1.64 6.66 -39.22 -0.26 1.38 16 4 C -0.21 -2.20 8.69 -39.43 -0.34 -2.54 16 5 C -0.06 -0.55 5.88 -104.65 -0.62 -1.16 16 6 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 7 C -0.16 -1.65 9.70 -39.56 -0.38 -2.03 16 8 C -0.07 -0.78 8.86 -39.60 -0.35 -1.13 16 9 C -0.12 -1.55 4.94 -104.47 -0.52 -2.07 16 10 C 0.13 1.87 2.55 -68.86 -0.18 1.70 16 11 H 0.05 0.84 7.36 -51.93 -0.38 0.46 16 12 C -0.13 -1.75 9.40 37.16 0.35 -1.40 16 13 N -0.69 -10.67 5.57 -107.94 -0.60 -11.27 16 14 C 0.06 1.08 5.48 -3.82 -0.02 1.06 16 15 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 16 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 26 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16 28 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.67 6.97 -52.49 -0.37 1.30 16 34 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.34 5.01 7.26 -39.29 -0.29 4.72 16 38 H 0.07 1.26 7.44 -51.93 -0.39 0.88 16 39 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -31.87 357.85 -8.88 -40.75 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -7.54 Total: 0.05 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -1.66 Total: -21.27 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.14 Total: -38.12 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.19 Total: -3.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.87 -8.88 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531959774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.807 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds