Wall clock time and date at job start Thu Apr 9 2020 13:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00363 * 2 1 4 4 C 1.38763 * 120.05300 * 0.25102 * 3 2 1 5 5 C 1.38122 * 119.94452 * 180.27631 * 4 3 2 6 6 C 1.50697 * 119.96978 * 179.74838 * 5 4 3 7 7 C 1.38282 * 120.05404 * 359.72785 * 5 4 3 8 8 C 1.38245 * 120.11611 * 0.02562 * 7 5 4 9 9 C 1.38169 * 120.05064 * 359.97438 * 8 7 5 10 10 C 1.50708 * 120.02539 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46904 * 145.00074 * 10 9 8 12 12 C 1.53003 * 109.46876 * 265.00207 * 10 9 8 13 13 N 1.46903 * 109.46830 * 25.00289 * 10 9 8 14 14 C 1.46898 * 110.99673 * 155.00071 * 13 10 9 15 15 C 1.53006 * 109.47006 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47242 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99967 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00542 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99408 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.46854 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47025 * 119.99859 * 21 19 17 24 24 H 1.48498 * 109.46692 * 239.99831 * 21 19 17 25 25 H 1.08993 * 109.47089 * 60.00559 * 1 2 3 26 26 H 1.09008 * 109.46682 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46754 * 299.99707 * 1 2 3 28 28 H 1.08002 * 120.02797 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.47183 * 269.97847 * 6 5 4 30 30 H 1.08993 * 109.47509 * 29.97505 * 6 5 4 31 31 H 1.09003 * 109.46775 * 149.98234 * 6 5 4 32 32 H 1.08006 * 119.94567 * 179.97438 * 7 5 4 33 33 H 1.08002 * 119.97467 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.46579 * 179.97438 * 12 10 9 35 35 H 1.08994 * 109.47006 * 299.99855 * 12 10 9 36 36 H 1.08998 * 109.47007 * 59.99936 * 12 10 9 37 37 H 1.00895 * 111.00497 * 31.03993 * 13 10 9 38 38 H 1.09001 * 109.47062 * 59.99745 * 14 13 10 39 39 H 1.08993 * 109.47084 * 299.99192 * 14 13 10 40 40 H 1.09001 * 109.46801 * 300.00064 * 15 14 13 41 41 H 1.09001 * 109.46998 * 59.99660 * 15 14 13 42 42 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 43 43 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 44 44 H 0.96999 * 119.99910 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 1.1019 4.8698 -0.0005 7 6 3.3019 3.6758 -0.0059 8 6 4.0560 2.5171 -0.0060 9 6 3.4311 1.2848 -0.0002 10 6 4.2538 0.0221 -0.0009 11 1 3.7494 -0.7404 0.5927 12 6 4.4203 -0.4772 -1.4375 13 7 5.5754 0.2985 0.5779 14 6 6.1704 -0.9222 1.1381 15 6 7.5431 -0.5954 1.7296 16 6 8.1626 -1.8666 2.3136 17 6 9.5143 -1.5446 2.8968 18 1 9.8934 -0.5341 2.8555 19 6 10.2670 -2.5398 3.4832 20 7 9.8051 -3.7701 3.5340 21 14 11.9423 -2.1405 4.2067 22 1 12.2287 -0.6950 4.0234 23 1 11.9462 -2.4666 5.6554 24 1 12.9837 -2.9425 3.5159 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 0.2128 2.3204 0.0098 29 1 0.9006 5.1723 -1.0282 30 1 0.1593 4.6924 0.5171 31 1 1.6535 5.6597 0.5093 32 1 3.7922 4.6381 -0.0108 33 1 5.1344 2.5752 -0.0106 34 1 5.0157 -1.3902 -1.4380 35 1 3.4397 -0.6822 -1.8669 36 1 4.9246 0.2854 -2.0310 37 1 5.5201 1.0264 1.2744 38 1 6.2827 -1.6665 0.3497 39 1 5.5219 -1.3165 1.9203 40 1 8.1914 -0.2012 0.9470 41 1 7.4311 0.1491 2.5179 42 1 7.5140 -2.2603 3.0962 43 1 8.2745 -2.6113 1.5256 44 1 10.3345 -4.4703 3.9468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531959774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:37 Heat of formation + Delta-G solvation = -54.379920 kcal Electronic energy + Delta-G solvation = -21010.495800 eV Core-core repulsion = 17926.352463 eV Total energy + Delta-G solvation = -3084.143337 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38199 -38.83575 -37.99471 -35.92872 -34.26831 -32.57092 -31.20916 -30.55499 -28.62738 -27.94341 -27.13626 -24.55552 -23.51307 -22.73831 -21.93056 -21.17188 -18.61183 -18.40132 -17.39887 -17.22852 -16.70718 -16.52728 -16.27449 -15.46428 -15.33036 -15.00640 -14.89893 -14.62764 -14.38791 -14.33772 -13.72251 -13.46895 -13.39977 -13.09396 -12.99033 -12.90431 -12.78112 -12.65047 -12.43855 -12.42330 -12.21717 -12.04971 -11.79883 -11.61191 -11.48465 -11.34468 -11.06262 -10.55842 -9.66977 -9.44171 -9.03098 -8.19925 -6.31082 0.34216 0.49639 1.40214 1.40838 1.54640 2.39541 2.41430 2.76062 3.13118 3.15141 3.67045 3.92088 4.03416 4.19011 4.24274 4.28860 4.32183 4.36982 4.37869 4.47803 4.55616 4.69957 4.70865 4.78036 4.78735 4.84781 4.85393 4.92872 4.97302 4.99934 5.11633 5.23102 5.27392 5.33543 5.36353 5.48023 5.54273 5.66572 5.75135 5.86002 5.90838 6.09081 6.27318 6.41295 6.50369 6.86068 7.38184 8.92471 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.002939 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.403746 B = 9524.947058 C =10131.049813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.122 3.878 4 C -0.213 4.213 5 C -0.055 4.055 6 C -0.113 4.113 7 C -0.163 4.163 8 C -0.074 4.074 9 C -0.143 4.143 10 C 0.136 3.864 11 H 0.037 0.963 12 C -0.124 4.124 13 N -0.679 5.679 14 C 0.073 3.927 15 C -0.090 4.090 16 C 0.025 3.975 17 C -0.541 4.541 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.063 0.937 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.343 0.657 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.050 0.950 42 H -0.011 1.011 43 H -0.009 1.009 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 15.824 -9.257 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.055 4.055 6 C -0.169 4.169 7 C -0.181 4.181 8 C -0.092 4.092 9 C -0.144 4.144 10 C 0.026 3.974 11 H 0.055 0.945 12 C -0.181 4.181 13 N -0.312 5.312 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.013 4.013 17 C -0.579 4.579 18 H 0.079 0.921 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.162 0.838 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.007 0.993 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.740 15.403 -9.807 28.391 hybrid contribution 0.181 -0.582 1.281 1.419 sum -21.560 14.821 -8.525 27.516 Atomic orbital electron populations 1.23309 0.76664 1.05296 1.02219 1.86081 1.23280 1.26982 1.88597 1.18979 0.91609 0.85016 0.96816 1.21291 1.00710 0.91314 1.09868 1.20092 0.94207 0.95483 0.95752 1.20857 0.99358 0.93335 1.03345 1.21232 0.93544 0.98816 1.04516 1.21053 1.00920 0.90795 0.96439 1.19354 0.90809 0.95682 1.08524 1.20125 0.87223 0.93336 0.96674 0.94489 1.21648 1.01173 1.00730 0.94591 1.60680 1.22309 1.09429 1.38738 1.21874 0.94925 0.92083 0.96765 1.21359 0.94649 0.97958 0.98826 1.18972 0.94629 0.93416 0.94250 1.21729 1.03446 0.95333 1.37417 0.92125 1.26028 1.02677 0.94809 0.96565 1.70115 1.39704 1.01884 1.45871 0.85358 0.78702 0.78806 0.77944 1.18486 1.20304 1.20303 0.91434 0.86880 0.91847 0.83527 0.89937 0.90607 0.90392 0.84037 0.84367 0.93239 0.92054 0.92153 0.83774 0.91943 0.96440 0.92552 0.93114 0.99286 0.99047 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.77 9.64 -92.40 -0.89 -8.67 16 3 C 0.12 2.90 6.66 22.51 0.15 3.05 16 4 C -0.21 -4.02 8.69 22.37 0.19 -3.83 16 5 C -0.06 -0.96 5.88 -19.88 -0.12 -1.08 16 6 C -0.11 -1.20 10.01 71.24 0.71 -0.48 16 7 C -0.16 -3.14 9.70 22.28 0.22 -2.93 16 8 C -0.07 -1.72 8.86 22.25 0.20 -1.53 16 9 C -0.14 -3.72 4.94 -19.77 -0.10 -3.81 16 10 C 0.14 3.95 2.55 44.17 0.11 4.07 16 11 H 0.04 1.20 7.36 -2.39 -0.02 1.18 16 12 C -0.12 -3.39 9.40 71.98 0.68 -2.71 16 13 N -0.68 -21.33 5.57 -495.43 -2.76 -24.09 16 14 C 0.07 2.72 5.48 86.31 0.47 3.20 16 15 C -0.09 -3.92 5.41 30.60 0.17 -3.75 16 16 C 0.02 1.38 4.97 29.85 0.15 1.53 16 17 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -58.49 13.29 21.45 0.28 -58.21 16 21 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 26 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.06 0.72 7.65 -2.39 -0.02 0.70 16 28 H 0.15 2.00 6.30 -2.91 -0.02 1.98 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.14 3.20 6.97 -2.91 -0.02 3.18 16 34 H 0.05 1.42 7.45 -2.39 -0.02 1.40 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.34 10.18 7.26 -89.70 -0.65 9.53 16 38 H 0.06 2.40 7.44 -2.39 -0.02 2.39 16 39 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 40 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.92 357.85 3.61 -65.31 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.31 Total: 16.63 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 4.64 Total: -38.33 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.47 Total: -82.29 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.89 Total: -8.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -68.92 3.61 -65.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531959774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.927 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds