Wall clock time and date at job start Thu Apr 9 2020 13:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99379 * 2 1 4 4 C 1.38748 * 120.06018 * 359.97003 * 3 2 1 5 5 C 1.38116 * 119.94607 * 180.02562 * 4 3 2 6 6 C 1.50709 * 119.97505 * 180.02562 * 5 4 3 7 7 C 1.38284 * 120.05490 * 0.02562 * 5 4 3 8 8 C 1.38244 * 120.11262 * 359.70371 * 7 5 4 9 9 C 1.38160 * 120.05440 * 0.54990 * 8 7 5 10 10 C 1.50699 * 120.03319 * 179.74804 * 9 8 7 11 11 H 1.08998 * 109.47629 * 219.72846 * 10 9 8 12 12 C 1.52997 * 109.47156 * 99.72191 * 10 9 8 13 13 N 1.46904 * 109.46851 * 339.72639 * 10 9 8 14 14 C 1.46899 * 111.00029 * 204.99994 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00380 * 21 19 17 23 23 H 1.48503 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47402 * 300.00322 * 21 19 17 25 25 H 1.09002 * 109.47021 * 60.00842 * 1 2 3 26 26 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47474 * 300.00347 * 1 2 3 28 28 H 1.08004 * 120.02758 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.46838 * 89.99551 * 6 5 4 30 30 H 1.08993 * 109.47135 * 210.00143 * 6 5 4 31 31 H 1.09000 * 109.46519 * 329.99798 * 6 5 4 32 32 H 1.08005 * 119.94628 * 180.02562 * 7 5 4 33 33 H 1.08002 * 119.97294 * 180.27641 * 8 7 5 34 34 H 1.09007 * 109.47280 * 300.00182 * 12 10 9 35 35 H 1.08997 * 109.47489 * 60.00240 * 12 10 9 36 36 H 1.09007 * 109.47004 * 180.02562 * 12 10 9 37 37 H 1.00908 * 110.99583 * 328.94906 * 13 10 9 38 38 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 39 39 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 42 42 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 43 43 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 44 44 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9207 3.6048 -0.0012 6 6 1.1017 4.8699 -0.0013 7 6 3.3017 3.6759 -0.0016 8 6 4.0558 2.5173 0.0047 9 6 3.4311 1.2850 -0.0001 10 6 4.2537 0.0223 0.0010 11 1 3.7925 -0.7124 -0.6590 12 6 4.3221 -0.5405 1.4221 13 7 5.6115 0.3221 -0.4728 14 6 6.2455 -0.8734 -1.0445 15 6 7.6545 -0.5224 -1.5265 16 6 8.3151 -1.7675 -2.1213 17 6 9.7027 -1.4217 -2.5966 18 1 10.0763 -0.4144 -2.4851 19 6 10.4958 -2.3912 -3.1728 20 7 10.0411 -3.6179 -3.3081 21 14 12.2156 -1.9622 -3.7626 22 1 13.0236 -1.4718 -2.6172 23 1 12.8568 -3.1709 -4.3398 24 1 12.1333 -0.9029 -4.7999 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3203 -0.0007 29 1 0.9045 5.1751 1.0264 30 1 1.6511 5.6583 -0.5155 31 1 0.1570 4.6910 -0.5148 32 1 3.7920 4.6382 -0.0016 33 1 5.1343 2.5754 0.0088 34 1 4.7834 0.1942 2.0821 35 1 3.3147 -0.7630 1.7738 36 1 4.9175 -1.4536 1.4229 37 1 5.6029 1.0803 -1.1387 38 1 6.3047 -1.6521 -0.2841 39 1 5.6528 -1.2318 -1.8862 40 1 7.5949 0.2562 -2.2870 41 1 8.2475 -0.1637 -0.6852 42 1 8.3747 -2.5458 -1.3604 43 1 7.7223 -2.1265 -2.9626 44 1 10.5989 -4.2998 -3.7137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531959775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:39 Heat of formation + Delta-G solvation = -35.006236 kcal Electronic energy + Delta-G solvation = -21011.054822 eV Core-core repulsion = 17927.751591 eV Total energy + Delta-G solvation = -3083.303231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55058 -37.93473 -36.84852 -34.16471 -32.63909 -31.22141 -30.34053 -29.20917 -27.94871 -26.70194 -25.72943 -22.89787 -22.60086 -21.68744 -20.30085 -19.96754 -17.71728 -16.59938 -16.25901 -16.01836 -15.94617 -15.10911 -14.54171 -14.38487 -14.21200 -14.04247 -13.85012 -13.76751 -13.41007 -12.58865 -12.50271 -12.31493 -12.25368 -12.05428 -11.83753 -11.70077 -11.52303 -11.47011 -11.08073 -11.04555 -10.79042 -10.59202 -10.46403 -10.43149 -9.62162 -9.27698 -9.01427 -8.83880 -8.28999 -8.23638 -8.06919 -5.94361 -3.96307 1.18101 1.32785 3.11130 3.37360 3.41169 3.44100 3.59595 4.36348 4.50014 4.53226 4.71747 4.82963 4.83316 4.89351 4.99942 5.17237 5.23505 5.31482 5.40735 5.41245 5.43920 5.57172 5.58241 5.66600 5.86202 5.90422 5.98648 6.03511 6.08577 6.21575 6.33449 6.38158 6.45898 6.47971 6.69608 6.79974 6.88241 7.20749 7.24028 7.45236 7.71080 7.74915 7.90774 8.06623 8.49885 9.10857 9.67285 11.17137 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.002934 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.202315 B = 9539.564530 C =10183.696285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.133 3.867 4 C -0.211 4.211 5 C -0.056 4.056 6 C -0.114 4.114 7 C -0.156 4.156 8 C -0.067 4.067 9 C -0.118 4.118 10 C 0.131 3.869 11 H 0.054 0.946 12 C -0.129 4.129 13 N -0.687 5.687 14 C 0.059 3.941 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.337 0.663 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.078 13.251 8.403 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.056 4.056 6 C -0.170 4.170 7 C -0.175 4.175 8 C -0.086 4.086 9 C -0.119 4.119 10 C 0.022 3.978 11 H 0.071 0.929 12 C -0.187 4.187 13 N -0.319 5.319 14 C -0.069 4.069 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.160 0.840 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.665 12.780 8.954 26.700 hybrid contribution 0.164 0.167 -1.232 1.254 sum -21.501 12.947 7.721 26.259 Atomic orbital electron populations 1.23037 0.78728 1.03878 1.01107 1.86121 1.21019 1.26756 1.88563 1.18808 0.91644 0.84170 0.96642 1.21001 0.99588 0.91795 1.10544 1.19677 0.94070 0.94370 0.97501 1.20794 0.99248 0.94714 1.02292 1.20968 0.93026 0.98575 1.04895 1.21009 1.00889 0.90534 0.96123 1.19412 0.90279 0.96118 1.06055 1.20203 0.87721 0.92493 0.97413 0.92856 1.21701 1.00935 1.00960 0.95116 1.60770 1.17521 1.09706 1.43905 1.22170 0.96203 0.91573 0.96992 1.21615 0.92855 1.00495 0.99462 1.19057 0.94867 0.91973 0.95640 1.21234 0.99531 0.95860 1.39053 0.92728 1.25033 0.98363 0.95055 0.96094 1.69961 1.37075 1.01859 1.44781 0.86658 0.84623 0.77645 0.79068 1.20225 1.21343 1.20288 0.92824 0.88275 0.92817 0.85734 0.91126 0.91322 0.91772 0.85917 0.84001 0.92267 0.92786 0.92294 0.84368 0.91380 0.95768 0.93729 0.92549 0.96579 0.96847 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.66 9.64 -19.44 -0.19 -3.84 16 3 C 0.13 1.63 6.66 -39.22 -0.26 1.37 16 4 C -0.21 -2.19 8.69 -39.44 -0.34 -2.53 16 5 C -0.06 -0.56 5.88 -104.65 -0.62 -1.17 16 6 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 7 C -0.16 -1.65 9.70 -39.56 -0.38 -2.03 16 8 C -0.07 -0.81 8.87 -39.61 -0.35 -1.16 16 9 C -0.12 -1.55 5.00 -104.47 -0.52 -2.07 16 10 C 0.13 1.88 2.49 -68.86 -0.17 1.71 16 11 H 0.05 0.83 7.51 -51.93 -0.39 0.44 16 12 C -0.13 -1.76 9.39 37.16 0.35 -1.41 16 13 N -0.69 -10.69 5.61 -107.95 -0.61 -11.29 16 14 C 0.06 1.08 5.48 -3.83 -0.02 1.06 16 15 C -0.11 -2.28 5.41 -26.74 -0.14 -2.42 16 16 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 21 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.12 1.02 6.30 -52.48 -0.33 0.68 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.67 6.72 -52.49 -0.35 1.32 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.06 0.83 7.45 -51.92 -0.39 0.44 16 37 H 0.34 4.98 6.99 -39.29 -0.27 4.71 16 38 H 0.07 1.27 7.44 -51.93 -0.39 0.88 16 39 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -31.85 357.44 -8.87 -40.72 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.52 Total: 0.11 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.66 Total: -21.32 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.13 Total: -38.15 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.19 Total: -3.84 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.85 -8.87 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531959775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.713 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds