Wall clock time and date at job start Thu Apr 9 2020 13:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99379 * 2 1 4 4 C 1.38748 * 120.06018 * 359.97003 * 3 2 1 5 5 C 1.38116 * 119.94607 * 180.02562 * 4 3 2 6 6 C 1.50709 * 119.97505 * 180.02562 * 5 4 3 7 7 C 1.38284 * 120.05490 * 0.02562 * 5 4 3 8 8 C 1.38244 * 120.11262 * 359.70371 * 7 5 4 9 9 C 1.38160 * 120.05440 * 0.54990 * 8 7 5 10 10 C 1.50699 * 120.03319 * 179.74804 * 9 8 7 11 11 H 1.08998 * 109.47629 * 219.72846 * 10 9 8 12 12 C 1.52997 * 109.47156 * 99.72191 * 10 9 8 13 13 N 1.46904 * 109.46851 * 339.72639 * 10 9 8 14 14 C 1.46899 * 111.00029 * 204.99994 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46778 * 60.00380 * 21 19 17 23 23 H 1.48503 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47402 * 300.00322 * 21 19 17 25 25 H 1.09002 * 109.47021 * 60.00842 * 1 2 3 26 26 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47474 * 300.00347 * 1 2 3 28 28 H 1.08004 * 120.02758 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.46838 * 89.99551 * 6 5 4 30 30 H 1.08993 * 109.47135 * 210.00143 * 6 5 4 31 31 H 1.09000 * 109.46519 * 329.99798 * 6 5 4 32 32 H 1.08005 * 119.94628 * 180.02562 * 7 5 4 33 33 H 1.08002 * 119.97294 * 180.27641 * 8 7 5 34 34 H 1.09007 * 109.47280 * 300.00182 * 12 10 9 35 35 H 1.08997 * 109.47489 * 60.00240 * 12 10 9 36 36 H 1.09007 * 109.47004 * 180.02562 * 12 10 9 37 37 H 1.00908 * 110.99583 * 328.94906 * 13 10 9 38 38 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 39 39 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 42 42 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 43 43 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 44 44 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0006 5 6 1.9207 3.6048 -0.0012 6 6 1.1017 4.8699 -0.0013 7 6 3.3017 3.6759 -0.0016 8 6 4.0558 2.5173 0.0047 9 6 3.4311 1.2850 -0.0001 10 6 4.2537 0.0223 0.0010 11 1 3.7925 -0.7124 -0.6590 12 6 4.3221 -0.5405 1.4221 13 7 5.6115 0.3221 -0.4728 14 6 6.2455 -0.8734 -1.0445 15 6 7.6545 -0.5224 -1.5265 16 6 8.3151 -1.7675 -2.1213 17 6 9.7027 -1.4217 -2.5966 18 1 10.0763 -0.4144 -2.4851 19 6 10.4958 -2.3912 -3.1728 20 7 10.0411 -3.6179 -3.3081 21 14 12.2156 -1.9622 -3.7626 22 1 13.0236 -1.4718 -2.6172 23 1 12.8568 -3.1709 -4.3398 24 1 12.1333 -0.9029 -4.7999 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2127 2.3203 -0.0007 29 1 0.9045 5.1751 1.0264 30 1 1.6511 5.6583 -0.5155 31 1 0.1570 4.6910 -0.5148 32 1 3.7920 4.6382 -0.0016 33 1 5.1343 2.5754 0.0088 34 1 4.7834 0.1942 2.0821 35 1 3.3147 -0.7630 1.7738 36 1 4.9175 -1.4536 1.4229 37 1 5.6029 1.0803 -1.1387 38 1 6.3047 -1.6521 -0.2841 39 1 5.6528 -1.2318 -1.8862 40 1 7.5949 0.2562 -2.2870 41 1 8.2475 -0.1637 -0.6852 42 1 8.3747 -2.5458 -1.3604 43 1 7.7223 -2.1265 -2.9626 44 1 10.5989 -4.2998 -3.7137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531959775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:54:39 Heat of formation + Delta-G solvation = -53.435487 kcal Electronic energy + Delta-G solvation = -21011.853975 eV Core-core repulsion = 17927.751591 eV Total energy + Delta-G solvation = -3084.102384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38676 -38.84167 -37.99452 -35.92867 -34.26479 -32.56748 -31.24159 -30.54081 -28.61214 -27.95339 -27.13711 -24.55487 -23.51036 -22.73837 -21.92930 -21.17412 -18.62282 -18.39772 -17.38424 -17.22877 -16.70799 -16.53185 -16.28732 -15.46786 -15.36520 -14.98558 -14.90880 -14.61533 -14.38579 -14.31892 -13.72266 -13.47219 -13.40111 -13.09224 -12.98595 -12.91216 -12.74532 -12.63527 -12.44826 -12.41142 -12.26111 -12.03555 -11.79604 -11.61401 -11.48260 -11.35413 -11.07622 -10.54565 -9.67308 -9.45284 -9.02297 -8.19512 -6.30917 0.34181 0.49597 1.40170 1.43959 1.51812 2.39827 2.41608 2.76052 3.13315 3.14406 3.66905 3.91719 4.03132 4.19056 4.24311 4.28896 4.31808 4.37159 4.38289 4.47487 4.55295 4.69906 4.71299 4.78476 4.78671 4.84369 4.85357 4.92757 4.96970 4.99762 5.11550 5.23166 5.27254 5.32809 5.37074 5.47438 5.53872 5.66435 5.75158 5.85954 5.90557 6.08916 6.27310 6.41032 6.50299 6.85866 7.38250 8.92468 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026989 B = 0.002934 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.202315 B = 9539.564530 C =10183.696285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.122 3.878 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.112 4.112 7 C -0.163 4.163 8 C -0.077 4.077 9 C -0.142 4.142 10 C 0.136 3.864 11 H 0.037 0.963 12 C -0.123 4.123 13 N -0.680 5.680 14 C 0.072 3.928 15 C -0.090 4.090 16 C 0.026 3.974 17 C -0.544 4.544 18 H 0.061 0.939 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.266 1.266 25 H 0.063 0.937 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.147 0.853 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.343 0.657 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.056 0.944 42 H -0.009 1.009 43 H -0.011 1.011 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.797 15.400 8.562 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.076 3.924 4 C -0.231 4.231 5 C -0.056 4.056 6 C -0.169 4.169 7 C -0.181 4.181 8 C -0.095 4.095 9 C -0.143 4.143 10 C 0.027 3.973 11 H 0.055 0.945 12 C -0.181 4.181 13 N -0.313 5.313 14 C -0.057 4.057 15 C -0.128 4.128 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.079 0.921 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.191 1.191 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.009 0.991 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.405 14.947 9.122 28.436 hybrid contribution 0.279 -0.499 -1.266 1.389 sum -22.126 14.448 7.856 27.568 Atomic orbital electron populations 1.23311 0.76681 1.05301 1.02214 1.86087 1.23258 1.26920 1.88579 1.18962 0.91552 0.85038 0.96818 1.21288 1.00724 0.91306 1.09822 1.20094 0.94192 0.95505 0.95793 1.20858 0.99359 0.93328 1.03340 1.21229 0.93560 0.98795 1.04486 1.21056 1.00937 0.90848 0.96628 1.19357 0.90885 0.95649 1.08447 1.20113 0.86826 0.93244 0.97129 0.94495 1.21643 1.01240 1.00386 0.94847 1.60703 1.18558 1.08497 1.43519 1.21875 0.94615 0.92549 0.96624 1.21358 0.94176 0.98032 0.99244 1.18961 0.94551 0.93499 0.94186 1.21680 1.00704 0.96354 1.39450 0.92092 1.26026 1.03158 0.94800 0.96030 1.70101 1.38945 1.03030 1.45472 0.85469 0.78771 0.77722 0.78902 1.19088 1.20780 1.19074 0.91845 0.86863 0.91455 0.83493 0.89949 0.90400 0.90590 0.84043 0.84344 0.92268 0.91947 0.93254 0.83707 0.91952 0.96403 0.93069 0.92569 0.99076 0.99294 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.67 9.64 -92.47 -0.89 -8.56 16 3 C 0.12 2.90 6.66 22.51 0.15 3.05 16 4 C -0.21 -4.00 8.69 22.36 0.19 -3.81 16 5 C -0.06 -0.97 5.88 -19.88 -0.12 -1.09 16 6 C -0.11 -1.20 10.01 71.24 0.71 -0.48 16 7 C -0.16 -3.15 9.70 22.28 0.22 -2.93 16 8 C -0.08 -1.79 8.87 22.25 0.20 -1.60 16 9 C -0.14 -3.72 5.00 -19.77 -0.10 -3.82 16 10 C 0.14 3.98 2.49 44.17 0.11 4.09 16 11 H 0.04 1.20 7.51 -2.39 -0.02 1.18 16 12 C -0.12 -3.40 9.39 71.98 0.68 -2.72 16 13 N -0.68 -21.38 5.61 -495.45 -2.78 -24.15 16 14 C 0.07 2.72 5.48 86.30 0.47 3.19 16 15 C -0.09 -3.92 5.41 30.59 0.17 -3.76 16 16 C 0.03 1.42 4.97 29.84 0.15 1.57 16 17 C -0.54 -32.07 9.11 25.60 0.23 -31.83 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 21 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.06 0.70 7.66 -2.39 -0.02 0.69 16 26 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 28 H 0.15 1.98 6.30 -2.91 -0.02 1.97 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 3.22 6.72 -2.91 -0.02 3.20 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.06 1.59 8.05 -2.39 -0.02 1.57 16 36 H 0.05 1.42 7.45 -2.38 -0.02 1.40 16 37 H 0.34 10.14 6.99 -89.69 -0.63 9.51 16 38 H 0.06 2.40 7.44 -2.39 -0.02 2.38 16 39 H 0.02 0.69 8.06 -2.39 -0.02 0.67 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -68.91 357.44 3.61 -65.30 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.34 Total: 16.85 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 4.64 Total: -38.48 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.49 Total: -82.40 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.89 Total: -8.56 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.91 3.61 -65.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531959775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.860 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds