Wall clock time and date at job start Thu Apr 9 2020 13:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00634 * 2 1 4 4 H 1.48495 * 109.47236 * 240.00274 * 3 2 1 5 5 H 1.48508 * 109.46523 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46958 * 119.99628 * 3 2 1 7 7 C 1.37887 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00330 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99503 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46676 * 180.02562 * 9 7 2 11 11 C 1.53048 * 109.45648 * 185.00237 * 10 9 7 12 12 C 1.53196 * 109.30949 * 178.62517 * 11 10 9 13 13 N 1.46927 * 108.77609 * 54.63444 * 12 11 10 14 14 C 1.34774 * 120.63299 * 126.36621 * 13 12 11 15 15 O 1.21284 * 119.99810 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00159 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47320 * 180.02562 * 16 14 13 18 18 H 1.09005 * 110.34587 * 307.29545 * 17 16 14 19 19 C 1.51100 * 110.48430 * 69.63892 * 17 16 14 20 20 C 1.30724 * 111.14096 * 135.39640 * 19 17 16 21 21 C 1.51106 * 110.98690 * 359.84700 * 20 19 17 22 22 C 1.54630 * 110.39024 * 185.00318 * 17 16 14 23 23 C 1.46927 * 118.73716 * 306.64103 * 13 12 11 24 24 C 1.52760 * 109.00939 * 53.31001 * 23 13 12 25 25 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47019 * 60.00375 * 9 7 2 27 27 H 1.09001 * 109.47200 * 300.00000 * 9 7 2 28 28 H 1.08999 * 109.45697 * 304.96923 * 10 9 7 29 29 H 1.08999 * 109.49784 * 58.66937 * 11 10 9 30 30 H 1.08997 * 109.49093 * 298.57499 * 11 10 9 31 31 H 1.09000 * 109.58240 * 294.84409 * 12 11 10 32 32 H 1.09000 * 109.70187 * 174.48812 * 12 11 10 33 33 H 1.08998 * 109.46960 * 60.00682 * 16 14 13 34 34 H 1.08994 * 109.47434 * 300.00383 * 16 14 13 35 35 H 1.08004 * 124.45196 * 315.31945 * 19 17 16 36 36 H 1.08003 * 124.56566 * 179.97438 * 20 19 17 37 37 H 1.09002 * 110.38747 * 224.83749 * 21 20 19 38 38 H 1.09000 * 110.38500 * 102.57217 * 21 20 19 39 39 H 1.09003 * 111.03946 * 98.41034 * 22 17 16 40 40 H 1.09001 * 111.07005 * 334.48878 * 22 17 16 41 41 H 1.08994 * 109.58789 * 173.14373 * 23 13 12 42 42 H 1.09003 * 109.58585 * 293.57290 * 23 13 12 43 43 H 1.09002 * 109.56676 * 185.55418 * 24 23 13 44 44 H 1.08995 * 109.38617 * 65.51501 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4837 -4.9838 -0.1264 12 6 2.4842 -6.1435 -0.1606 13 7 3.3500 -6.0562 1.0232 14 6 3.4910 -7.1110 1.8502 15 8 2.9004 -8.1451 1.6202 16 6 4.3832 -7.0060 3.0601 17 6 4.3668 -8.3323 3.8226 18 1 3.3413 -8.6346 4.0353 19 6 5.0784 -9.4056 3.0322 20 6 5.8758 -10.1041 3.7972 21 6 5.8290 -9.6079 5.2237 22 6 5.1753 -8.2093 5.1349 23 6 4.0545 -4.7952 1.2917 24 6 3.0409 -3.6524 1.3066 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.9288 -3.5554 -0.8427 29 1 0.8988 -4.9806 -1.0461 30 1 0.8179 -5.1028 0.7284 31 1 3.0913 -6.0757 -1.0633 32 1 1.9475 -7.0922 -0.1516 33 1 4.0222 -6.2087 3.7096 34 1 5.4016 -6.7827 2.7422 35 1 4.9451 -9.5748 1.9738 36 1 6.4886 -10.9253 3.4557 37 1 6.8367 -9.5308 5.6321 38 1 5.2212 -10.2729 5.8372 39 1 4.5167 -8.0306 5.9850 40 1 5.9315 -7.4281 5.0576 41 1 4.5517 -4.8533 2.2599 42 1 4.7924 -4.6152 0.5098 43 1 3.5643 -2.7015 1.4067 44 1 2.3604 -3.7833 2.1478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579837372.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:12 Heat of formation + Delta-G solvation = -45.525921 kcal Electronic energy + Delta-G solvation = -21632.634186 eV Core-core repulsion = 18548.874787 eV Total energy + Delta-G solvation = -3083.759399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24848 -38.65680 -37.15623 -34.00077 -32.38110 -31.68870 -30.51607 -29.05787 -28.09479 -25.82966 -24.25818 -22.81555 -21.75740 -20.68773 -19.82742 -18.99114 -18.31443 -16.99006 -16.32102 -16.03543 -15.80211 -15.32474 -14.80633 -14.55507 -13.78006 -13.72300 -13.43603 -13.19157 -12.84881 -12.54179 -12.31237 -12.08089 -11.99156 -11.89479 -11.80602 -11.40971 -11.26467 -11.17119 -11.02026 -10.89985 -10.77709 -10.69239 -10.47470 -10.14079 -9.74050 -9.51810 -9.26782 -9.00124 -8.99279 -8.37755 -8.32539 -6.01834 -4.04157 2.18598 2.78173 3.19025 3.30215 3.35664 3.36934 4.38748 4.43115 4.47152 4.68162 4.79483 5.05560 5.13266 5.25129 5.29578 5.33083 5.38939 5.42439 5.48582 5.51107 5.54517 5.63836 5.69490 5.70027 5.76878 5.81895 5.99418 6.01705 6.07631 6.14008 6.36906 6.38351 6.45856 6.51263 6.69011 6.79932 6.95113 6.97857 7.09162 7.61069 7.64733 7.79559 7.97752 8.33700 8.39867 9.02214 9.59656 11.09386 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.003323 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.585662 B = 8424.016505 C = 8970.318480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.112 3.888 13 N -0.607 5.607 14 C 0.513 3.487 15 O -0.550 6.550 16 C -0.132 4.132 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.123 4.123 23 C 0.103 3.897 24 C -0.120 4.120 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.433 -15.428 7.589 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.167 4.167 12 C -0.011 4.011 13 N -0.340 5.340 14 C 0.301 3.699 15 O -0.429 6.429 16 C -0.172 4.172 17 C -0.073 4.073 18 H 0.108 0.892 19 C -0.155 4.155 20 C -0.204 4.204 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.019 4.019 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.964 -15.841 7.468 20.662 hybrid contribution 0.390 1.134 -0.149 1.208 sum 11.354 -14.707 7.320 19.970 Atomic orbital electron populations 1.69955 1.06068 1.26672 1.50771 1.25028 0.94802 0.99187 0.95443 0.86703 0.79612 0.83378 0.78562 1.20292 1.21363 1.20268 1.21202 0.92874 0.90969 1.50544 0.92649 1.19120 0.93604 0.91004 0.97185 1.21186 0.97988 0.94670 0.96067 1.22022 0.97650 0.94864 1.02193 1.21645 0.92609 1.00213 0.86592 1.48213 1.46779 1.12874 1.26131 1.20637 0.82103 0.83034 0.84088 1.90656 1.48586 1.29238 1.74400 1.21736 1.00405 0.99441 0.95595 1.20830 1.00371 0.92716 0.93345 0.89202 1.23356 0.96013 0.96625 0.99501 1.23280 1.00773 1.00857 0.95500 1.21322 1.00732 0.96126 0.95352 1.22567 0.99167 0.97242 0.97061 1.21852 0.95263 0.83719 1.01091 1.21829 0.97663 0.97200 0.99113 0.92968 0.96613 0.96667 0.92376 0.91201 0.92134 0.91999 0.89746 0.88646 0.88935 0.85868 0.86162 0.91467 0.91002 0.90816 0.90854 0.90436 0.91589 0.89667 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.89 8.39 -34.43 -0.29 -14.18 16 8 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 10 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 11 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 12 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 13 N -0.61 -8.74 2.98 -173.03 -0.52 -9.26 16 14 C 0.51 7.37 7.50 -10.99 -0.08 7.29 16 15 O -0.55 -9.52 14.33 5.55 0.08 -9.44 16 16 C -0.13 -1.42 3.45 -27.89 -0.10 -1.51 16 17 C -0.05 -0.58 2.51 -90.72 -0.23 -0.81 16 18 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 19 C -0.14 -1.54 9.27 -35.75 -0.33 -1.87 16 20 C -0.19 -1.78 10.79 -35.75 -0.39 -2.17 16 21 C -0.10 -0.81 6.80 -26.82 -0.18 -0.99 16 22 C -0.12 -1.03 6.71 -25.01 -0.17 -1.20 16 23 C 0.10 1.36 6.31 -3.93 -0.02 1.34 16 24 C -0.12 -2.01 5.17 -26.84 -0.14 -2.15 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.31 7.00 -51.93 -0.36 0.95 16 33 H 0.10 0.92 7.68 -51.93 -0.40 0.52 16 34 H 0.09 0.87 7.94 -51.93 -0.41 0.45 16 35 H 0.12 1.54 7.59 -52.48 -0.40 1.14 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 41 H 0.08 0.82 5.93 -51.93 -0.31 0.51 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -30.62 344.03 -9.68 -40.30 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.64 Total: -0.50 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.50 Total: -16.61 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.22 Total: -34.99 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.62 -9.68 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579837372.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.222 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds