Wall clock time and date at job start Thu Apr 9 2020 13:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46911 * 2 1 4 4 C 1.50695 * 109.47368 * 119.99981 * 2 1 3 5 5 C 1.38310 * 119.96195 * 300.00310 * 4 2 1 6 6 C 1.38260 * 120.15265 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.07369 * 359.97438 * 6 5 4 8 8 C 1.38885 * 119.92502 * 0.02562 * 7 6 5 9 9 N 1.39678 * 120.07762 * 180.02562 * 8 7 6 10 10 C 1.46500 * 120.00138 * 179.97438 * 9 8 7 11 11 C 1.52995 * 109.47235 * 89.99819 * 10 9 8 12 12 O 1.42902 * 109.47431 * 64.99804 * 11 10 9 13 13 C 1.46498 * 119.99677 * 359.97438 * 9 8 7 14 14 C 1.53001 * 109.47108 * 90.00277 * 13 9 8 15 15 C 1.50699 * 109.47230 * 179.97438 * 14 13 9 16 16 H 1.07997 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99955 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99988 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99921 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47044 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47213 * 119.99893 * 19 17 15 22 22 H 1.48497 * 109.46732 * 239.99962 * 19 17 15 23 23 C 1.38082 * 119.96621 * 119.99723 * 4 2 1 24 24 H 1.08999 * 109.47229 * 299.99878 * 1 2 3 25 25 H 1.09001 * 109.47171 * 60.00334 * 1 2 3 26 26 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47229 * 240.00122 * 2 1 3 28 28 H 1.09006 * 109.46985 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46931 * 299.99814 * 3 2 1 30 30 H 1.08999 * 109.47074 * 60.00027 * 3 2 1 31 31 H 1.08007 * 119.92501 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.96798 * 179.97438 * 6 5 4 33 33 H 1.08007 * 120.03668 * 180.02562 * 7 6 5 34 34 H 1.08994 * 109.46748 * 209.99704 * 10 9 8 35 35 H 1.09004 * 109.46919 * 329.99630 * 10 9 8 36 36 H 1.09002 * 109.47327 * 184.99939 * 11 10 9 37 37 H 1.09005 * 109.47438 * 304.99679 * 11 10 9 38 38 H 0.96696 * 114.00087 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.47144 * 210.00116 * 13 9 8 40 40 H 1.09000 * 109.47505 * 329.99967 * 13 9 8 41 41 H 1.08995 * 109.46987 * 299.99935 * 14 13 9 42 42 H 1.09000 * 109.47190 * 59.99497 * 14 13 9 43 43 H 0.97001 * 119.99586 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.03311 * 0.28109 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6977 -0.2372 2.4862 6 6 2.1569 -0.8856 3.6178 7 6 2.9514 -2.0090 3.4973 8 6 3.2894 -2.4869 2.2378 9 7 4.0922 -3.6230 2.1124 10 6 4.4472 -4.1259 0.7830 11 6 5.7487 -3.4685 0.3198 12 8 6.8185 -3.8748 1.1758 13 6 4.5792 -4.3116 3.3102 14 6 3.5707 -5.3839 3.7275 15 6 4.0719 -6.0927 4.9594 16 1 5.0156 -5.8073 5.4002 17 6 3.3257 -7.1056 5.5235 18 7 2.1768 -7.4535 4.9863 19 14 3.9467 -7.9837 7.0509 20 1 5.2552 -7.4092 7.4546 21 1 2.9679 -7.8103 8.1540 22 1 4.1111 -9.4302 6.7577 23 6 2.8261 -1.8330 1.1029 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.0770 0.6413 2.5832 32 1 1.8941 -0.5133 4.5969 33 1 3.3095 -2.5153 4.3817 34 1 4.5818 -5.2066 0.8275 35 1 3.6494 -3.8878 0.0795 36 1 5.9661 -3.7744 -0.7036 37 1 5.6427 -2.3844 0.3602 38 1 7.6763 -3.4955 0.9403 39 1 5.5394 -4.7802 3.0948 40 1 4.6998 -3.5916 4.1196 41 1 2.6105 -4.9153 3.9430 42 1 3.4501 -6.1039 2.9182 43 1 1.6517 -8.1659 5.3835 44 1 3.0907 -2.1994 0.1219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593047876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:34 Heat of formation + Delta-G solvation = -39.847449 kcal Electronic energy + Delta-G solvation = -21797.069042 eV Core-core repulsion = 18713.555879 eV Total energy + Delta-G solvation = -3083.513162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53386 -37.45357 -36.04657 -34.44025 -33.09489 -30.87748 -29.85888 -29.25514 -27.15685 -27.14160 -24.59768 -22.90343 -22.69366 -21.13570 -20.66405 -18.70645 -17.56323 -16.68925 -16.38572 -15.69527 -15.11559 -14.84097 -14.53208 -14.26700 -13.96790 -13.65939 -13.42583 -13.35954 -12.93972 -12.67654 -12.47598 -12.29521 -12.08328 -11.71560 -11.62271 -11.44101 -11.19359 -11.10402 -11.07020 -10.88596 -10.66452 -10.54697 -10.24856 -9.96537 -9.91976 -9.69682 -9.12255 -9.00701 -8.35453 -8.29212 -6.63339 -5.98199 -4.01611 1.87675 2.10845 3.32194 3.39458 3.43655 3.71933 4.29166 4.41474 4.48894 4.80089 4.91515 5.23582 5.30013 5.31665 5.34203 5.37513 5.43997 5.51702 5.58355 5.59432 5.72637 5.76140 5.81097 5.84186 5.93567 6.03653 6.13027 6.16491 6.20464 6.24636 6.39456 6.49905 6.69652 6.84292 6.96177 6.99703 7.11888 7.36287 7.66662 7.72179 7.75709 7.86602 8.09491 8.20063 8.44188 9.06198 9.62425 11.12702 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.004517 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.696307 B = 6197.625413 C = 7136.910986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.036 4.036 5 C -0.190 4.190 6 C -0.071 4.071 7 C -0.195 4.195 8 C 0.234 3.766 9 N -0.612 5.612 10 C 0.123 3.877 11 C 0.058 3.942 12 O -0.561 6.561 13 C 0.128 3.872 14 C 0.009 3.991 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.211 4.211 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.371 0.629 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 15.020 -11.770 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.036 4.036 5 C -0.210 4.210 6 C -0.090 4.090 7 C -0.217 4.217 8 C 0.129 3.871 9 N -0.318 5.318 10 C -0.002 4.002 11 C -0.021 4.021 12 O -0.365 6.365 13 C 0.007 3.993 14 C -0.029 4.029 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.234 4.234 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.216 0.784 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.548 14.369 -11.468 18.449 hybrid contribution 0.647 -0.371 0.556 0.931 sum 2.195 13.998 -10.911 17.883 Atomic orbital electron populations 1.21833 0.94585 1.02056 1.01467 1.20079 0.95774 0.95750 0.95724 1.21826 1.01074 0.95399 1.01500 1.19411 0.95772 0.94326 0.94133 1.20512 1.06055 1.02484 0.91940 1.20814 0.95733 0.94471 0.97945 1.20838 1.04813 0.99691 0.96391 1.17894 0.89289 0.86327 0.93567 1.46843 1.52216 1.26929 1.05844 1.21401 0.93737 0.99626 0.85402 1.22765 0.88685 0.98305 0.92356 1.86622 1.19048 1.73857 1.56973 1.21821 0.98430 0.94811 0.84258 1.19463 0.94501 0.92853 0.96067 1.21172 1.05780 1.17720 1.11175 0.92553 1.25000 0.94892 0.97020 0.97352 1.69994 1.12891 1.29935 1.40395 0.86543 0.78906 0.79490 0.83114 1.19678 1.21015 1.21049 1.20425 1.06604 0.99609 0.96723 0.92419 0.92912 0.92485 0.91053 0.92736 0.92911 0.92434 0.87388 0.86810 0.85511 0.89858 0.89919 0.93654 0.93742 0.78373 0.91092 0.92301 0.96302 0.96736 0.93090 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.01 37.16 0.33 -1.13 16 2 C -0.05 -0.61 3.09 -91.77 -0.28 -0.89 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 4 C -0.04 -0.51 4.78 -104.66 -0.50 -1.01 16 5 C -0.19 -2.74 8.71 -39.55 -0.34 -3.09 16 6 C -0.07 -1.13 10.04 -39.61 -0.40 -1.53 16 7 C -0.19 -3.59 9.21 -39.38 -0.36 -3.95 16 8 C 0.23 4.23 6.55 -83.79 -0.55 3.68 16 9 N -0.61 -11.40 2.57 -171.76 -0.44 -11.84 16 10 C 0.12 1.90 5.56 -4.04 -0.02 1.88 16 11 C 0.06 0.74 7.39 37.15 0.27 1.02 16 12 O -0.56 -7.92 12.48 -35.23 -0.44 -8.36 16 13 C 0.13 2.77 4.92 -4.04 -0.02 2.75 16 14 C 0.01 0.24 5.30 -27.88 -0.15 0.10 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -27.26 13.29 55.43 0.74 -26.53 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.21 -3.29 8.83 -39.38 -0.35 -3.63 16 24 H 0.06 0.59 7.38 -51.93 -0.38 0.20 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 31 H 0.11 1.35 7.09 -52.48 -0.37 0.97 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.13 2.51 6.14 -52.48 -0.32 2.18 16 34 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.08 1.12 6.20 -51.93 -0.32 0.80 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.37 3.39 9.12 45.56 0.42 3.80 16 39 H 0.07 1.56 7.11 -51.93 -0.37 1.19 16 40 H 0.06 1.27 6.20 -51.93 -0.32 0.95 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.11 1.55 6.03 -52.48 -0.32 1.24 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -32.30 354.01 -8.82 -41.12 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.55 Total: 3.78 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.44 Total: -20.36 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.29 Total: -38.37 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.44 Total: -8.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.30 -8.82 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593047876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.272 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds