Wall clock time and date at job start Thu Apr 9 2020 13:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.63782 * 2 1 4 4 O 1.21281 * 120.00040 * 235.84524 * 3 2 1 5 5 N 1.34776 * 119.99923 * 55.84972 * 3 2 1 6 6 C 1.46923 * 120.63382 * 4.07968 * 5 3 2 7 7 C 1.53624 * 108.54628 * 126.36613 * 6 5 3 8 8 C 1.53041 * 109.23937 * 54.85919 * 7 6 5 9 9 C 1.53043 * 109.53540 * 298.51139 * 8 7 6 10 10 H 1.09003 * 109.52092 * 301.39415 * 9 8 7 11 11 C 1.50702 * 109.49599 * 181.32035 * 9 8 7 12 12 H 1.08002 * 120.00005 * 245.60633 * 11 9 8 13 13 C 1.37877 * 120.00154 * 65.60212 * 11 9 8 14 14 N 1.31512 * 119.99932 * 9.40382 * 13 11 9 15 15 Si 1.86801 * 119.99835 * 189.40062 * 13 11 9 16 16 H 1.48495 * 109.47053 * 94.99273 * 15 13 11 17 17 H 1.48503 * 109.47044 * 214.98907 * 15 13 11 18 18 H 1.48499 * 109.47488 * 334.99076 * 15 13 11 19 19 C 1.46924 * 120.62830 * 184.35972 * 5 3 2 20 20 C 1.53024 * 109.63814 * 120.41742 * 2 1 3 21 21 C 1.50070 * 110.03045 * 169.19101 * 20 2 1 22 22 C 1.29254 * 124.22346 * 342.64798 * 21 20 2 23 23 C 1.50069 * 124.01569 * 0.73521 * 22 21 20 24 24 C 1.53019 * 110.14651 * 342.73552 * 23 22 21 25 25 H 1.08996 * 109.47467 * 293.40357 * 1 2 3 26 26 H 1.09006 * 109.47242 * 53.40161 * 1 2 3 27 27 H 1.08998 * 109.47155 * 173.40099 * 1 2 3 28 28 H 1.09004 * 109.58619 * 246.20075 * 6 5 3 29 29 H 1.09000 * 109.58499 * 6.62705 * 6 5 3 30 30 H 1.08994 * 109.63576 * 294.86942 * 7 6 5 31 31 H 1.08999 * 109.43249 * 174.72700 * 7 6 5 32 32 H 1.08997 * 109.45811 * 178.49336 * 8 7 6 33 33 H 1.08997 * 109.45019 * 58.52640 * 8 7 6 34 34 H 0.97001 * 119.99869 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.59019 * 353.37109 * 19 5 3 36 36 H 1.08998 * 109.58718 * 113.79886 * 19 5 3 37 37 H 1.08995 * 109.35815 * 289.32802 * 20 2 1 38 38 H 1.09000 * 109.35987 * 49.05666 * 20 2 1 39 39 H 1.08006 * 117.95892 * 162.77733 * 21 20 2 40 40 H 1.07998 * 118.02028 * 180.59934 * 22 21 20 41 41 H 1.08997 * 109.35820 * 222.52962 * 23 22 21 42 42 H 1.08997 * 109.24780 * 102.87176 * 23 22 21 43 43 H 1.09007 * 109.64274 * 289.75016 * 24 23 22 44 44 H 1.09003 * 109.81865 * 169.22786 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4194 0.0000 4 8 2.7957 1.7924 -0.8692 5 7 1.6458 2.2743 0.9659 6 6 0.7986 1.8145 2.0747 7 6 1.4790 2.1931 3.3991 8 6 1.7638 3.6968 3.4079 9 6 2.7159 4.0440 2.2611 10 1 3.6412 3.4787 2.3720 11 6 3.0213 5.5195 2.2902 12 1 2.6911 6.1554 1.4822 13 6 3.7223 6.0576 3.3486 14 7 4.2834 5.2658 4.2362 15 14 3.8752 7.9112 3.5215 16 1 2.8131 8.4129 4.4299 17 1 5.2076 8.2476 4.0846 18 1 3.7267 8.5469 2.1877 19 6 2.0541 3.6851 0.9269 20 6 2.0443 -0.7297 1.2429 21 6 3.5214 -0.9672 1.1251 22 6 4.1818 -0.9035 0.0158 23 6 3.5650 -0.5668 -1.3102 24 6 2.0457 -0.7361 -1.2430 25 1 -0.3634 0.4082 0.9431 26 1 -0.3634 0.6127 -0.8251 27 1 -0.3633 -1.0208 -0.1181 28 1 -0.1779 2.2949 2.0120 29 1 0.6800 0.7324 2.0196 30 1 2.4156 1.6448 3.4995 31 1 0.8195 1.9429 4.2301 32 1 2.2224 3.9739 4.3571 33 1 0.8295 4.2439 3.2825 34 1 4.7763 5.6444 4.9809 35 1 2.7642 3.8377 0.1141 36 1 1.1780 4.3149 0.7724 37 1 1.8452 -0.1231 2.1262 38 1 1.5310 -1.6865 1.3384 39 1 4.0687 -1.2089 2.0243 40 1 5.2428 -1.1026 0.0449 41 1 3.9689 -1.2299 -2.0753 42 1 3.8025 0.4659 -1.5651 43 1 1.7979 -1.7952 -1.1708 44 1 1.5868 -0.3126 -2.1364 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597897088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:43 Heat of formation + Delta-G solvation = -33.515771 kcal Electronic energy + Delta-G solvation = -23329.110975 eV Core-core repulsion = 20245.872375 eV Total energy + Delta-G solvation = -3083.238600 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09775 -39.09821 -37.83174 -35.60668 -34.06501 -32.89762 -32.01547 -31.29036 -27.57731 -27.06757 -26.63548 -24.17201 -23.39341 -23.18134 -21.19001 -20.01958 -19.16362 -18.38211 -17.40749 -16.94007 -16.71448 -16.15540 -15.88141 -15.45347 -15.17789 -14.71598 -14.66358 -14.53593 -14.20011 -13.91719 -13.68684 -13.47413 -13.33566 -13.13872 -12.94137 -12.86112 -12.79696 -12.56675 -12.51042 -12.32599 -11.92927 -11.83049 -11.56164 -11.34376 -11.09937 -10.98130 -10.81105 -10.46710 -10.21752 -9.73880 -9.37123 -8.16404 -6.26207 1.38946 1.39896 1.44301 1.50493 1.76485 2.18240 2.43335 3.13533 3.48027 3.66695 3.75920 4.03147 4.13639 4.21441 4.30544 4.32489 4.46255 4.50124 4.53503 4.59732 4.63626 4.71435 4.78374 4.82110 4.85648 4.91193 4.95463 4.97601 5.05530 5.09342 5.19010 5.28920 5.30616 5.35357 5.43976 5.50085 5.60290 5.65147 5.79723 5.92352 6.01572 6.10156 6.32056 6.66898 6.84531 7.36505 7.40980 8.91864 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.005191 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.326255 B = 5392.859836 C = 5559.117568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C 0.513 3.487 4 O -0.584 6.584 5 N -0.604 5.604 6 C 0.089 3.911 7 C -0.130 4.130 8 C -0.098 4.098 9 C 0.042 3.958 10 H -0.014 1.014 11 C -0.539 4.539 12 H 0.052 0.948 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 0.953 3.047 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.130 3.870 20 C -0.090 4.090 21 C -0.176 4.176 22 C -0.160 4.160 23 C -0.117 4.117 24 C -0.086 4.086 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.261 0.739 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 -15.325 -4.453 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C 0.303 3.697 4 O -0.465 6.465 5 N -0.335 5.335 6 C -0.032 4.032 7 C -0.168 4.168 8 C -0.136 4.136 9 C 0.023 3.977 10 H 0.005 0.995 11 C -0.577 4.577 12 H 0.070 0.930 13 C -0.181 4.181 14 N -0.555 5.555 15 Si 0.778 3.222 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.195 1.195 19 C 0.008 3.992 20 C -0.126 4.126 21 C -0.194 4.194 22 C -0.178 4.178 23 C -0.153 4.153 24 C -0.124 4.124 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.149 0.851 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.933 -15.122 -4.738 18.702 hybrid contribution 1.136 1.567 0.313 1.961 sum -8.797 -13.554 -4.425 16.754 Atomic orbital electron populations 1.22214 0.90108 1.04735 1.03726 1.20900 0.98573 0.89567 0.98751 1.21304 0.79563 0.88526 0.80304 1.90475 1.37359 1.78947 1.39731 1.48281 1.50812 1.09554 1.24861 1.22713 0.93401 1.02517 0.84547 1.22023 1.00341 0.96480 0.97909 1.21351 0.97929 0.94554 0.99773 1.18846 0.93127 0.94583 0.91152 0.99548 1.21440 1.35774 0.94258 1.06256 0.92997 1.25698 0.94408 1.02204 0.95824 1.70102 1.34484 1.36259 1.14662 0.85624 0.77463 0.80632 0.78450 1.19500 1.21152 1.19466 1.21500 0.98218 0.80617 0.98899 1.20940 0.93155 1.02135 0.96401 1.22117 0.97159 1.02402 0.97753 1.22141 0.99599 1.00417 0.95628 1.20893 0.96072 1.03169 0.95189 1.21441 0.94709 1.00531 0.95730 0.89711 0.92760 0.88370 0.89792 0.85059 0.93857 0.88852 0.94082 0.93626 0.92984 0.93422 0.92083 0.89311 0.86238 0.87704 0.88539 0.90649 0.89914 0.88689 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.09 71.98 0.58 -1.96 16 2 C -0.07 -1.80 0.51 -52.79 -0.03 -1.83 16 3 C 0.51 18.20 5.79 87.66 0.51 18.71 16 4 O -0.58 -25.56 12.49 -3.03 -0.04 -25.60 16 5 N -0.60 -21.85 2.96 -818.06 -2.42 -24.27 16 6 C 0.09 2.43 4.04 86.51 0.35 2.78 16 7 C -0.13 -4.27 5.88 30.82 0.18 -4.09 16 8 C -0.10 -4.35 5.02 30.62 0.15 -4.19 16 9 C 0.04 2.17 2.11 -11.46 -0.02 2.14 16 10 H -0.01 -0.83 8.09 -2.39 -0.02 -0.85 16 11 C -0.54 -30.44 8.48 25.60 0.22 -30.22 16 12 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 13 C 0.02 1.01 5.20 84.66 0.44 1.45 16 14 N -0.92 -54.10 12.17 21.45 0.26 -53.84 16 15 Si 0.95 44.25 29.55 68.60 2.03 46.27 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 C 0.13 5.86 5.66 86.36 0.49 6.35 16 20 C -0.09 -1.94 4.44 29.66 0.13 -1.81 16 21 C -0.18 -4.70 9.51 27.22 0.26 -4.44 16 22 C -0.16 -4.60 9.62 27.22 0.26 -4.34 16 23 C -0.12 -3.33 5.51 29.66 0.16 -3.17 16 24 C -0.09 -2.01 4.71 30.73 0.14 -1.87 16 25 H 0.08 1.25 4.81 -2.39 -0.01 1.24 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.99 8.12 -2.38 -0.02 1.97 16 29 H 0.13 2.65 2.57 -2.39 -0.01 2.65 16 30 H 0.04 1.57 7.96 -2.39 -0.02 1.55 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.04 2.09 6.89 -2.39 -0.02 2.07 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.05 2.40 7.00 -2.39 -0.02 2.38 16 36 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.09 1.97 4.59 -2.39 -0.01 1.96 16 38 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.10 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.10 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 3.06 5.19 -2.71 -0.01 3.05 16 43 H 0.09 1.65 8.12 -2.38 -0.02 1.63 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.23 323.66 4.63 -65.60 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.97 Total: 18.33 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.83 Total: -26.48 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.16 Total: -78.12 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.04 Total: -25.60 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.23 4.63 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597897088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.080 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds