Wall clock time and date at job start Thu Apr 9 2020 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.63865 * 2 1 4 4 O 1.21280 * 120.00208 * 239.16057 * 3 2 1 5 5 N 1.34776 * 119.99974 * 59.16123 * 3 2 1 6 6 C 1.46928 * 120.63244 * 5.01516 * 5 3 2 7 7 C 1.52758 * 109.00782 * 233.58371 * 6 5 3 8 8 C 1.53039 * 109.38576 * 305.58841 * 7 6 5 9 9 C 1.53040 * 109.54160 * 61.23872 * 8 7 6 10 10 H 1.09000 * 109.49356 * 58.58871 * 9 8 7 11 11 C 1.50693 * 109.50293 * 178.68840 * 9 8 7 12 12 H 1.07995 * 120.00453 * 119.83666 * 11 9 8 13 13 C 1.37883 * 119.99660 * 299.84045 * 11 9 8 14 14 N 1.31510 * 120.00123 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99939 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47052 * 60.00101 * 15 13 11 17 17 H 1.48502 * 109.46683 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46803 * 299.99694 * 15 13 11 19 19 C 1.46932 * 120.62929 * 185.29436 * 5 3 2 20 20 C 1.53016 * 109.64158 * 239.36657 * 2 1 3 21 21 C 1.50066 * 110.14726 * 289.74734 * 20 2 1 22 22 C 1.29446 * 124.07537 * 342.87655 * 21 20 2 23 23 C 1.50062 * 124.07533 * 0.46047 * 22 21 20 24 24 C 1.53022 * 110.14857 * 342.87343 * 23 22 21 25 25 H 1.09006 * 109.47408 * 308.18843 * 1 2 3 26 26 H 1.08998 * 109.47385 * 188.18477 * 1 2 3 27 27 H 1.09001 * 109.47465 * 68.18370 * 1 2 3 28 28 H 1.08999 * 109.58171 * 353.41677 * 6 5 3 29 29 H 1.08999 * 109.58533 * 113.84610 * 6 5 3 30 30 H 1.09003 * 109.56655 * 185.55373 * 7 6 5 31 31 H 1.08999 * 109.36344 * 65.49862 * 7 6 5 32 32 H 1.09011 * 109.45936 * 301.22116 * 8 7 6 33 33 H 1.09000 * 109.46345 * 181.26586 * 8 7 6 34 34 H 0.97001 * 120.00331 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.58403 * 246.15387 * 19 5 3 36 36 H 1.08997 * 109.58703 * 6.58230 * 19 5 3 37 37 H 1.09000 * 109.36263 * 49.95865 * 20 2 1 38 38 H 1.09004 * 109.35775 * 169.54293 * 20 2 1 39 39 H 1.08007 * 117.96467 * 162.84581 * 21 20 2 40 40 H 1.08004 * 117.96176 * 180.44561 * 22 21 20 41 41 H 1.09001 * 109.36126 * 222.66339 * 23 22 21 42 42 H 1.09000 * 109.36008 * 103.08210 * 23 22 21 43 43 H 1.09000 * 109.64577 * 289.75360 * 24 23 22 44 44 H 1.09002 * 109.64403 * 169.11766 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.7474 1.8095 -0.9018 5 7 1.6994 2.2551 1.0022 6 6 0.9310 1.7687 2.1562 7 6 -0.3033 2.6500 2.3392 8 6 0.1291 4.1143 2.4436 9 6 0.8362 4.5326 1.1524 10 1 0.1629 4.3914 0.3069 11 6 1.2329 5.9835 1.2434 12 1 2.2731 6.2645 1.1705 13 6 0.2678 6.9523 1.4199 14 7 -0.9989 6.6102 1.5082 15 14 0.7596 8.7509 1.5334 16 1 1.4494 9.1554 0.2821 17 1 -0.4546 9.5851 1.7206 18 1 1.6748 8.9418 2.6872 19 6 2.0882 3.6714 0.9585 20 6 2.0443 -0.7343 -1.2400 21 6 1.7698 -2.2048 -1.1209 22 6 1.4812 -2.8010 -0.0087 23 6 1.3713 -2.1033 1.3153 24 6 2.0456 -0.7315 1.2458 25 1 -0.3634 0.6354 0.8078 26 1 -0.3634 -1.0172 0.1463 27 1 -0.3634 0.3819 -0.9541 28 1 0.6202 0.7389 1.9803 29 1 1.5482 1.8182 3.0532 30 1 -0.8274 2.3596 3.2498 31 1 -0.9658 2.5265 1.4825 32 1 0.8111 4.2324 3.2857 33 1 -0.7487 4.7421 2.5968 34 1 -1.6779 7.2917 1.6327 35 1 2.8016 3.8791 1.7560 36 1 2.5406 3.8965 -0.0072 37 1 1.5427 -0.3436 -2.1254 38 1 3.1183 -0.5739 -1.3354 39 1 1.8152 -2.8029 -2.0191 40 1 1.3087 -3.8668 -0.0354 41 1 1.8568 -2.7061 2.0828 42 1 0.3192 -1.9763 1.5705 43 1 3.1260 -0.8573 1.1758 44 1 1.7977 -0.1557 2.1376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597897089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:46 Heat of formation + Delta-G solvation = -22.075973 kcal Electronic energy + Delta-G solvation = -23005.616846 eV Core-core repulsion = 19922.874313 eV Total energy + Delta-G solvation = -3082.742533 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.79181 -38.04487 -36.70811 -33.75575 -32.30486 -31.30014 -30.85745 -29.92312 -27.12075 -25.21527 -25.04484 -23.31385 -21.91173 -21.64277 -19.85205 -18.35500 -17.13194 -16.83385 -16.22121 -15.94942 -15.06991 -14.92903 -14.60565 -14.30718 -13.84299 -13.54026 -13.32046 -13.00596 -12.86518 -12.69920 -12.49726 -12.31630 -12.05536 -11.86124 -11.72197 -11.39912 -10.96802 -10.89794 -10.84089 -10.74224 -10.64735 -10.35865 -10.14907 -9.89090 -9.70618 -9.44068 -9.12760 -8.99350 -8.78679 -8.37948 -7.86466 -6.02073 -4.09151 2.23251 3.08383 3.31392 3.35702 3.38565 3.57252 4.42350 4.50933 4.60156 4.82587 5.01501 5.13401 5.22171 5.26970 5.29333 5.36472 5.41017 5.55642 5.63049 5.66804 5.75848 5.83806 5.90546 5.93121 6.02421 6.06429 6.13319 6.21920 6.32846 6.35978 6.42145 6.49232 6.58709 6.68074 6.83350 6.89373 6.99628 7.17343 7.33678 7.68694 7.92192 8.05381 8.07408 8.37737 8.69277 8.94405 9.55696 11.03386 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004490 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.817184 B = 6234.563955 C = 6563.790790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.075 4.075 3 C 0.519 3.481 4 O -0.552 6.552 5 N -0.599 5.599 6 C 0.088 3.912 7 C -0.138 4.138 8 C -0.112 4.112 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.515 4.515 12 H 0.056 0.944 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.117 3.883 20 C -0.069 4.069 21 C -0.145 4.145 22 C -0.164 4.164 23 C -0.089 4.089 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.095 0.905 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -17.427 1.437 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 C 0.307 3.693 4 O -0.431 6.431 5 N -0.330 5.330 6 C -0.035 4.035 7 C -0.176 4.176 8 C -0.150 4.150 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.554 4.554 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.004 4.004 20 C -0.106 4.106 21 C -0.163 4.163 22 C -0.183 4.183 23 C -0.126 4.126 24 C -0.163 4.163 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.606 -17.120 0.989 17.224 hybrid contribution 0.134 0.983 0.074 0.994 sum 1.740 -16.137 1.063 16.266 Atomic orbital electron populations 1.22275 0.92597 1.03058 1.03598 1.20722 0.97313 0.92455 0.97344 1.20370 0.80282 0.87019 0.81657 1.90638 1.38171 1.77615 1.36674 1.48205 1.53743 1.10840 1.20209 1.22253 0.93856 0.98902 0.88469 1.21978 0.96123 0.98728 1.00736 1.21620 1.02567 0.91915 0.98860 1.18957 0.91245 0.93142 0.94453 0.95334 1.21045 0.93457 0.90785 1.50067 0.92560 1.24927 0.94902 0.98912 0.94987 1.69860 0.99822 1.33327 1.49777 0.86646 0.77814 0.84801 0.78674 1.20232 1.21310 1.20258 1.21995 0.99339 0.77436 1.01665 1.20302 1.02183 0.91327 0.96766 1.22093 1.00071 0.96282 0.97816 1.21992 1.02315 0.99306 0.94643 1.20474 1.01254 0.95263 0.95581 1.22058 1.00801 0.95983 0.97408 0.90384 0.91161 0.92140 0.88674 0.92124 0.92468 0.92280 0.94626 0.88691 0.92935 0.92825 0.90443 0.90538 0.89888 0.87937 0.88176 0.91012 0.90406 0.91315 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.61 37.16 0.28 -1.72 16 2 C -0.08 -1.03 0.50 -155.45 -0.08 -1.11 16 3 C 0.52 9.51 6.50 -10.99 -0.07 9.43 16 4 O -0.55 -12.09 15.26 5.56 0.08 -12.00 16 5 N -0.60 -11.08 2.97 -173.03 -0.51 -11.60 16 6 C 0.09 1.34 3.99 -3.93 -0.02 1.32 16 7 C -0.14 -2.39 5.75 -26.84 -0.15 -2.54 16 8 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 14 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 15 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.12 2.55 5.64 -3.71 -0.02 2.53 16 20 C -0.07 -0.90 4.35 -28.18 -0.12 -1.03 16 21 C -0.14 -1.53 9.49 -35.90 -0.34 -1.88 16 22 C -0.16 -1.57 9.20 -35.90 -0.33 -1.90 16 23 C -0.09 -0.81 5.48 -28.18 -0.15 -0.97 16 24 C -0.13 -1.43 4.53 -26.52 -0.12 -1.55 16 25 H 0.08 1.01 4.02 -51.93 -0.21 0.80 16 26 H 0.07 0.74 5.44 -51.93 -0.28 0.46 16 27 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.10 1.19 2.75 -51.93 -0.14 1.05 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.07 7.46 -51.93 -0.39 0.68 16 32 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.09 2.39 6.05 -51.93 -0.31 2.08 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.83 7.04 -51.93 -0.37 1.47 16 37 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 38 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 39 H 0.10 0.95 8.06 -52.48 -0.42 0.52 16 40 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.65 6.74 -51.93 -0.35 0.30 16 43 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 44 H 0.09 0.95 4.68 -51.93 -0.24 0.71 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -29.64 321.73 -8.71 -38.35 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.88 Total: 2.36 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.85 Total: -13.81 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.11 Total: -35.84 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.64 -8.71 -38.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597897089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.274 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds