Wall clock time and date at job start Thu Apr 9 2020 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.63865 * 2 1 4 4 O 1.21280 * 120.00208 * 239.16057 * 3 2 1 5 5 N 1.34776 * 119.99974 * 59.16123 * 3 2 1 6 6 C 1.46928 * 120.63244 * 5.01516 * 5 3 2 7 7 C 1.52758 * 109.00782 * 233.58371 * 6 5 3 8 8 C 1.53039 * 109.38576 * 305.58841 * 7 6 5 9 9 C 1.53040 * 109.54160 * 61.23872 * 8 7 6 10 10 H 1.09000 * 109.49356 * 58.58871 * 9 8 7 11 11 C 1.50693 * 109.50293 * 178.68840 * 9 8 7 12 12 H 1.07995 * 120.00453 * 119.83666 * 11 9 8 13 13 C 1.37883 * 119.99660 * 299.84045 * 11 9 8 14 14 N 1.31510 * 120.00123 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99939 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47052 * 60.00101 * 15 13 11 17 17 H 1.48502 * 109.46683 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46803 * 299.99694 * 15 13 11 19 19 C 1.46932 * 120.62929 * 185.29436 * 5 3 2 20 20 C 1.53016 * 109.64158 * 239.36657 * 2 1 3 21 21 C 1.50066 * 110.14726 * 289.74734 * 20 2 1 22 22 C 1.29446 * 124.07537 * 342.87655 * 21 20 2 23 23 C 1.50062 * 124.07533 * 0.46047 * 22 21 20 24 24 C 1.53022 * 110.14857 * 342.87343 * 23 22 21 25 25 H 1.09006 * 109.47408 * 308.18843 * 1 2 3 26 26 H 1.08998 * 109.47385 * 188.18477 * 1 2 3 27 27 H 1.09001 * 109.47465 * 68.18370 * 1 2 3 28 28 H 1.08999 * 109.58171 * 353.41677 * 6 5 3 29 29 H 1.08999 * 109.58533 * 113.84610 * 6 5 3 30 30 H 1.09003 * 109.56655 * 185.55373 * 7 6 5 31 31 H 1.08999 * 109.36344 * 65.49862 * 7 6 5 32 32 H 1.09011 * 109.45936 * 301.22116 * 8 7 6 33 33 H 1.09000 * 109.46345 * 181.26586 * 8 7 6 34 34 H 0.97001 * 120.00331 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.58403 * 246.15387 * 19 5 3 36 36 H 1.08997 * 109.58703 * 6.58230 * 19 5 3 37 37 H 1.09000 * 109.36263 * 49.95865 * 20 2 1 38 38 H 1.09004 * 109.35775 * 169.54293 * 20 2 1 39 39 H 1.08007 * 117.96467 * 162.84581 * 21 20 2 40 40 H 1.08004 * 117.96176 * 180.44561 * 22 21 20 41 41 H 1.09001 * 109.36126 * 222.66339 * 23 22 21 42 42 H 1.09000 * 109.36008 * 103.08210 * 23 22 21 43 43 H 1.09000 * 109.64577 * 289.75360 * 24 23 22 44 44 H 1.09002 * 109.64403 * 169.11766 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0365 1.4193 0.0000 4 8 2.7474 1.8095 -0.9018 5 7 1.6994 2.2551 1.0022 6 6 0.9310 1.7687 2.1562 7 6 -0.3033 2.6500 2.3392 8 6 0.1291 4.1143 2.4436 9 6 0.8362 4.5326 1.1524 10 1 0.1629 4.3914 0.3069 11 6 1.2329 5.9835 1.2434 12 1 2.2731 6.2645 1.1705 13 6 0.2678 6.9523 1.4199 14 7 -0.9989 6.6102 1.5082 15 14 0.7596 8.7509 1.5334 16 1 1.4494 9.1554 0.2821 17 1 -0.4546 9.5851 1.7206 18 1 1.6748 8.9418 2.6872 19 6 2.0882 3.6714 0.9585 20 6 2.0443 -0.7343 -1.2400 21 6 1.7698 -2.2048 -1.1209 22 6 1.4812 -2.8010 -0.0087 23 6 1.3713 -2.1033 1.3153 24 6 2.0456 -0.7315 1.2458 25 1 -0.3634 0.6354 0.8078 26 1 -0.3634 -1.0172 0.1463 27 1 -0.3634 0.3819 -0.9541 28 1 0.6202 0.7389 1.9803 29 1 1.5482 1.8182 3.0532 30 1 -0.8274 2.3596 3.2498 31 1 -0.9658 2.5265 1.4825 32 1 0.8111 4.2324 3.2857 33 1 -0.7487 4.7421 2.5968 34 1 -1.6779 7.2917 1.6327 35 1 2.8016 3.8791 1.7560 36 1 2.5406 3.8965 -0.0072 37 1 1.5427 -0.3436 -2.1254 38 1 3.1183 -0.5739 -1.3354 39 1 1.8152 -2.8029 -2.0191 40 1 1.3087 -3.8668 -0.0354 41 1 1.8568 -2.7061 2.0828 42 1 0.3192 -1.9763 1.5705 43 1 3.1260 -0.8573 1.1758 44 1 1.7977 -0.1557 2.1376 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597897089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:46 Heat of formation + Delta-G solvation = -38.415620 kcal Electronic energy + Delta-G solvation = -23006.325386 eV Core-core repulsion = 19922.874313 eV Total energy + Delta-G solvation = -3083.451073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06771 -39.29488 -38.28572 -35.51701 -33.63858 -32.86831 -31.87842 -31.46292 -28.11532 -27.12689 -26.56200 -24.35787 -23.30722 -23.06763 -21.36953 -19.85721 -18.53895 -18.02350 -17.75320 -17.32164 -16.64631 -16.29497 -16.00676 -15.62205 -15.12077 -15.01707 -14.64256 -14.53181 -14.26442 -13.99576 -13.66056 -13.61849 -13.47589 -13.20169 -12.88244 -12.74978 -12.67776 -12.55624 -12.43135 -11.94180 -11.85820 -11.80497 -11.62320 -11.60379 -11.29971 -10.95172 -10.85109 -10.49937 -10.32097 -9.80943 -9.48791 -8.11448 -6.26755 1.40590 1.42118 1.47451 1.49502 1.63984 2.11454 2.43211 3.14913 3.39818 3.62038 3.84030 3.99322 4.10472 4.19929 4.22819 4.33100 4.39142 4.43340 4.50877 4.56632 4.62122 4.71269 4.73950 4.78135 4.85317 4.93707 4.95413 4.98822 5.02893 5.09489 5.13576 5.20979 5.28248 5.32330 5.43114 5.49595 5.56462 5.60598 5.82551 5.92520 6.11881 6.13046 6.33902 6.57411 6.82069 7.21443 7.41267 8.91965 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004490 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.817184 B = 6234.563955 C = 6563.790790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 C 0.509 3.491 4 O -0.599 6.599 5 N -0.602 5.602 6 C 0.088 3.912 7 C -0.130 4.130 8 C -0.105 4.105 9 C 0.043 3.957 10 H -0.015 1.015 11 C -0.541 4.541 12 H 0.050 0.950 13 C 0.019 3.981 14 N -0.911 5.911 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.129 3.871 20 C -0.067 4.067 21 C -0.163 4.163 22 C -0.149 4.149 23 C -0.089 4.089 24 C -0.123 4.123 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.043 0.957 28 H 0.132 0.868 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.888 -19.957 3.412 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.072 4.072 3 C 0.299 3.701 4 O -0.480 6.480 5 N -0.332 5.332 6 C -0.033 4.033 7 C -0.167 4.167 8 C -0.143 4.143 9 C 0.024 3.976 10 H 0.003 0.997 11 C -0.580 4.580 12 H 0.068 0.932 13 C -0.180 4.180 14 N -0.550 5.550 15 Si 0.780 3.220 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.193 1.193 19 C 0.006 3.994 20 C -0.104 4.104 21 C -0.181 4.181 22 C -0.167 4.167 23 C -0.125 4.125 24 C -0.161 4.161 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.062 0.938 28 H 0.150 0.850 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.143 0.857 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.079 -19.674 2.986 19.928 hybrid contribution 0.308 1.793 -0.577 1.909 sum 1.386 -17.880 2.408 18.095 Atomic orbital electron populations 1.22276 0.91354 1.04771 1.02724 1.20752 0.98035 0.89171 0.99218 1.21380 0.79361 0.88840 0.80515 1.90608 1.40257 1.78849 1.38299 1.48274 1.54070 1.09335 1.21536 1.22540 0.92782 1.00064 0.87877 1.21896 0.97161 0.95609 1.02084 1.21414 1.00821 0.94922 0.97146 1.18851 0.91663 0.92874 0.94185 0.99651 1.21409 0.93392 0.92631 1.50559 0.93162 1.25662 0.94882 1.02881 0.94568 1.69992 1.00551 1.34467 1.50023 0.85677 0.77723 0.79927 0.78717 1.20288 1.20620 1.19276 1.21557 0.97992 0.79654 1.00188 1.20219 1.00626 0.93594 0.95969 1.21994 1.02445 0.94401 0.99292 1.22280 0.99805 1.00504 0.94128 1.20579 1.02278 0.93657 0.96032 1.22084 1.00665 0.97413 0.95895 0.90476 0.88103 0.93782 0.85050 0.90080 0.88848 0.93386 0.94471 0.91854 0.92881 0.92256 0.93356 0.92246 0.92107 0.86732 0.85658 0.88579 0.88552 0.92074 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 7.61 71.98 0.55 -3.03 16 2 C -0.07 -1.81 0.50 -52.79 -0.03 -1.83 16 3 C 0.51 19.00 6.50 87.66 0.57 19.57 16 4 O -0.60 -27.66 15.26 -3.03 -0.05 -27.71 16 5 N -0.60 -22.36 2.97 -819.72 -2.44 -24.79 16 6 C 0.09 2.48 3.99 86.22 0.34 2.82 16 7 C -0.13 -4.28 5.75 30.53 0.18 -4.10 16 8 C -0.10 -4.70 4.96 30.62 0.15 -4.55 16 9 C 0.04 2.23 2.25 -11.46 -0.03 2.20 16 10 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 12 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 13 C 0.02 1.08 5.30 84.66 0.45 1.53 16 14 N -0.91 -52.26 11.32 21.45 0.24 -52.01 16 15 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.13 5.86 5.64 86.36 0.49 6.35 16 20 C -0.07 -1.75 4.35 29.65 0.13 -1.62 16 21 C -0.16 -3.10 9.49 27.03 0.26 -2.85 16 22 C -0.15 -2.21 9.20 27.03 0.25 -1.96 16 23 C -0.09 -1.18 5.48 29.66 0.16 -1.01 16 24 C -0.12 -2.42 4.53 30.73 0.14 -2.28 16 25 H 0.08 1.80 4.02 -2.38 -0.01 1.79 16 26 H 0.10 1.73 5.44 -2.39 -0.01 1.71 16 27 H 0.04 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.13 2.78 2.75 -2.39 -0.01 2.78 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 1.70 7.46 -2.39 -0.02 1.68 16 32 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 3.26 6.05 -2.39 -0.01 3.24 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.05 2.44 7.04 -2.39 -0.02 2.43 16 37 H 0.06 1.70 8.06 -2.39 -0.02 1.69 16 38 H 0.06 1.83 7.74 -2.39 -0.02 1.81 16 39 H 0.11 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.01 6.74 -2.39 -0.02 1.00 16 43 H 0.06 1.32 8.12 -2.39 -0.02 1.30 16 44 H 0.10 1.69 4.68 -2.39 -0.01 1.68 16 Total: -1.00 -68.84 321.73 4.59 -64.24 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.98 Total: 15.33 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.83 Total: -21.01 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -2.20 Total: -76.81 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.84 4.59 -64.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597897089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.828 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds