Wall clock time and date at job start Thu Apr 9 2020 13:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46508 * 109.47075 * 2 1 4 4 C 1.36947 * 119.99492 * 275.30469 * 3 2 1 5 5 H 1.07999 * 119.99954 * 37.58086 * 4 3 2 6 6 C 1.38806 * 119.99589 * 217.57994 * 4 3 2 7 7 N 1.31617 * 120.00649 * 21.42625 * 6 4 3 8 8 Si 1.86809 * 119.99761 * 201.42563 * 6 4 3 9 9 H 1.48497 * 109.47109 * 59.99941 * 8 6 4 10 10 H 1.48499 * 109.47087 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46807 * 300.00032 * 8 6 4 12 12 C 1.46493 * 120.00446 * 95.30712 * 3 2 1 13 13 C 1.53002 * 109.47095 * 270.00163 * 12 3 2 14 14 C 1.53002 * 109.47100 * 179.97438 * 13 12 3 15 15 O 1.42898 * 109.46884 * 179.97438 * 14 13 12 16 16 C 1.35899 * 116.99894 * 179.97438 * 15 14 13 17 17 C 1.38756 * 120.05814 * 0.02562 * 16 15 14 18 18 C 1.38117 * 119.94959 * 180.27625 * 17 16 15 19 19 C 1.38295 * 120.05093 * 359.48867 * 18 17 16 20 20 C 1.50701 * 119.94243 * 180.25365 * 19 18 17 21 21 C 1.38244 * 120.11373 * 0.51269 * 19 18 17 22 22 C 1.50693 * 119.97487 * 179.72289 * 21 19 18 23 23 C 1.38170 * 120.05002 * 359.74615 * 21 19 18 24 24 H 1.08997 * 109.47400 * 300.00780 * 1 2 3 25 25 H 1.09001 * 109.46742 * 60.00597 * 1 2 3 26 26 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47468 * 239.99763 * 2 1 3 28 28 H 1.09001 * 109.47221 * 119.99634 * 2 1 3 29 29 H 0.96998 * 120.00749 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47565 * 149.99593 * 12 3 2 31 31 H 1.09005 * 109.46689 * 29.99819 * 12 3 2 32 32 H 1.09002 * 109.47164 * 60.00046 * 13 12 3 33 33 H 1.08997 * 109.47071 * 299.99733 * 13 12 3 34 34 H 1.08995 * 109.47103 * 59.99618 * 14 13 12 35 35 H 1.09005 * 109.46695 * 299.99662 * 14 13 12 36 36 H 1.08006 * 120.02293 * 359.97438 * 17 16 15 37 37 H 1.07999 * 119.97967 * 179.72636 * 18 17 16 38 38 H 1.08994 * 109.47485 * 270.25451 * 20 19 18 39 39 H 1.08994 * 109.46989 * 30.25834 * 20 19 18 40 40 H 1.09001 * 109.46606 * 150.25620 * 20 19 18 41 41 H 1.09003 * 109.47079 * 270.02135 * 22 21 19 42 42 H 1.09005 * 109.47390 * 30.01936 * 22 21 19 43 43 H 1.08999 * 109.47426 * 150.02352 * 22 21 19 44 44 H 1.08002 * 120.02380 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1432 2.0633 -1.1810 5 1 1.4106 1.9277 -1.9629 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7981 -0.6491 8 14 3.0995 4.2793 -2.6588 9 1 1.9629 5.1784 -2.3349 10 1 4.3619 5.0613 -2.6663 11 1 2.8847 3.6722 -3.9969 12 6 2.3732 2.0328 1.2632 13 6 1.1425 2.7384 1.8364 14 6 1.5129 3.4184 3.1560 15 8 0.3636 4.0778 3.6910 16 6 0.5225 4.7353 4.8697 17 6 1.7594 4.7461 5.4983 18 6 1.9170 5.4102 6.6990 19 6 0.8457 6.0731 7.2695 20 6 1.0218 6.8017 8.5769 21 6 -0.3878 6.0639 6.6453 22 6 -1.5545 6.7820 7.2729 23 6 -0.5517 5.3965 5.4467 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.0489 3.4031 -0.7830 30 1 3.1616 2.7642 1.0859 31 1 2.7254 1.2835 1.9721 32 1 0.3540 2.0070 2.0138 33 1 0.7902 3.4877 1.1275 34 1 2.3015 4.1497 2.9791 35 1 1.8649 2.6687 3.8647 36 1 2.5972 4.2313 5.0514 37 1 2.8784 5.4151 7.1909 38 1 0.8121 6.1221 9.4028 39 1 2.0467 7.1640 8.6557 40 1 0.3338 7.6462 8.6176 41 1 -2.0876 6.0997 7.9350 42 1 -1.1906 7.6346 7.8465 43 1 -2.2293 7.1312 6.4914 44 1 -1.5156 5.3893 4.9596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:50 Heat of formation + Delta-G solvation = -28.702242 kcal Electronic energy + Delta-G solvation = -21169.997736 eV Core-core repulsion = 18086.967866 eV Total energy + Delta-G solvation = -3083.029870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19886 -39.10340 -37.97649 -34.11751 -33.78255 -33.43980 -32.53715 -30.39112 -28.58283 -27.17989 -26.70079 -25.36873 -23.32753 -22.57045 -21.92824 -21.32674 -18.92524 -18.39169 -17.31034 -17.17375 -16.78537 -16.24294 -15.77301 -15.65907 -15.14763 -15.05644 -14.73475 -14.39168 -14.16095 -14.11071 -13.94621 -13.55109 -13.34198 -13.12202 -13.07289 -12.77739 -12.66811 -12.65075 -12.56247 -12.37175 -12.17936 -12.08191 -11.95015 -11.66876 -11.64199 -11.44923 -11.22949 -10.51802 -9.75265 -8.96808 -8.58153 -7.84560 -5.48085 0.35004 0.45823 1.43735 1.47178 1.53217 2.20514 2.49986 2.74721 3.22015 3.66052 3.84915 3.89801 3.98125 4.07911 4.13452 4.29771 4.36422 4.37575 4.41677 4.47846 4.62889 4.68981 4.75386 4.79956 4.83792 4.85468 4.91040 4.95860 4.97318 5.03561 5.10472 5.22381 5.23772 5.29410 5.38197 5.43123 5.45939 5.56977 5.66401 5.72320 5.77041 5.93247 6.45307 6.48367 7.15976 7.84898 8.37444 9.10821 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.003538 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.451741 B = 7912.271697 C = 8447.853257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 N -0.602 5.602 4 C -0.270 4.270 5 H 0.052 0.948 6 C -0.032 4.032 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.273 1.273 12 C 0.155 3.845 13 C -0.117 4.117 14 C 0.075 3.925 15 O -0.335 6.335 16 C 0.105 3.895 17 C -0.225 4.225 18 C -0.083 4.083 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.055 4.055 22 C -0.114 4.114 23 C -0.171 4.171 24 H 0.045 0.955 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.253 0.747 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.145 0.855 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 6.107 18.499 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.010 3.990 3 N -0.323 5.323 4 C -0.400 4.400 5 H 0.070 0.930 6 C -0.230 4.230 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 C 0.029 3.971 13 C -0.157 4.157 14 C 0.000 4.000 15 O -0.249 6.249 16 C 0.059 3.941 17 C -0.244 4.244 18 C -0.100 4.100 19 C -0.136 4.136 20 C -0.164 4.164 21 C -0.055 4.055 22 C -0.170 4.170 23 C -0.190 4.190 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.808 6.131 18.349 20.862 hybrid contribution 0.468 0.421 -1.181 1.338 sum -7.339 6.552 17.169 19.788 Atomic orbital electron populations 1.22196 0.97700 1.00831 1.00552 1.21004 0.93495 0.85576 0.98958 1.43967 1.76437 1.09658 1.02227 1.19148 1.04284 1.21760 0.94819 0.92988 1.25813 0.93945 1.03052 1.00179 1.70099 1.03646 1.38040 1.44080 0.85577 0.76616 0.79879 0.79838 1.20905 1.21542 1.19882 1.20659 0.94499 0.96232 0.85740 1.22070 1.01121 0.99125 0.93393 1.22732 0.86481 0.95411 0.95389 1.86046 1.38408 1.65382 1.35082 1.19396 0.95029 0.93712 0.85920 1.21449 0.96720 1.06877 0.99355 1.21125 0.99709 0.95313 0.93894 1.20070 0.92760 1.01498 0.99310 1.20825 1.03332 0.99859 0.92367 1.19910 0.96249 0.96292 0.93035 1.20933 0.94617 1.00339 1.01160 1.20513 0.97992 1.02553 0.97908 0.93637 0.94669 0.91319 0.94817 0.93317 0.93800 0.91667 0.94591 0.92015 0.93985 0.92743 0.91031 0.85409 0.83772 0.90398 0.90989 0.90018 0.89734 0.89216 0.91131 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 10.21 71.98 0.73 -4.79 16 2 C 0.13 5.71 6.44 86.38 0.56 6.27 16 3 N -0.60 -30.24 2.43 -702.00 -1.71 -31.95 16 4 C -0.27 -14.96 9.45 84.03 0.79 -14.17 16 5 H 0.05 2.90 7.92 -2.91 -0.02 2.88 16 6 C -0.03 -1.80 4.95 84.86 0.42 -1.38 16 7 N -0.92 -53.16 11.47 21.65 0.25 -52.91 16 8 Si 0.95 45.01 29.61 68.60 2.03 47.04 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.16 7.26 5.33 86.38 0.46 7.72 16 13 C -0.12 -4.82 5.91 30.60 0.18 -4.64 16 14 C 0.08 2.69 4.74 71.98 0.34 3.03 16 15 O -0.33 -12.18 10.14 -92.41 -0.94 -13.12 16 16 C 0.10 3.34 6.69 22.51 0.15 3.49 16 17 C -0.23 -6.43 9.04 22.36 0.20 -6.23 16 18 C -0.08 -1.92 9.70 22.25 0.22 -1.70 16 19 C -0.14 -2.83 5.88 -19.85 -0.12 -2.95 16 20 C -0.11 -1.41 9.60 71.24 0.68 -0.72 16 21 C -0.05 -1.21 5.88 -19.88 -0.12 -1.33 16 22 C -0.11 -1.64 9.60 71.23 0.68 -0.96 16 23 C -0.17 -4.74 9.64 22.37 0.22 -4.52 16 24 H 0.04 1.62 6.64 -2.39 -0.02 1.60 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 28 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.07 3.48 5.52 -2.39 -0.01 3.46 16 31 H 0.04 1.56 7.86 -2.38 -0.02 1.54 16 32 H 0.06 2.44 6.64 -2.39 -0.02 2.42 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.98 7.66 -2.39 -0.02 1.96 16 35 H 0.07 2.29 7.66 -2.38 -0.02 2.27 16 36 H 0.13 3.55 6.30 -2.91 -0.02 3.53 16 37 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 40 H 0.08 0.84 5.94 -2.39 -0.01 0.83 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.09 0.96 5.94 -2.38 -0.01 0.95 16 43 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 44 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -64.07 353.32 6.00 -58.07 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.96 Total: 15.76 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 5.41 Total: -22.89 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.46 Total: -84.86 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.94 Total: -13.12 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.07 6.00 -58.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.366 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds