Wall clock time and date at job start Thu Apr 9 2020 13:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47230 * 2 1 4 4 H 1.09002 * 109.47216 * 197.76658 * 3 2 1 5 5 C 1.50695 * 109.46995 * 317.77021 * 3 2 1 6 6 H 1.07999 * 120.00087 * 120.62100 * 5 3 2 7 7 C 1.37876 * 120.00118 * 300.62331 * 5 3 2 8 8 N 1.31507 * 120.00180 * 344.98629 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 164.98360 * 7 5 3 10 10 H 1.48500 * 109.47174 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47110 * 300.00173 * 9 7 5 12 12 H 1.48507 * 109.47084 * 60.00087 * 9 7 5 13 13 N 1.46905 * 109.46885 * 77.76997 * 3 2 1 14 14 C 1.46896 * 110.99976 * 306.27296 * 13 3 2 15 15 C 1.53005 * 109.47035 * 199.35322 * 14 13 3 16 16 C 1.46904 * 110.99967 * 70.22865 * 13 3 2 17 17 C 1.50701 * 109.47308 * 76.51814 * 16 13 3 18 18 C 1.38282 * 119.97477 * 264.43862 * 17 16 13 19 19 C 1.38247 * 120.11336 * 179.72537 * 18 17 16 20 20 C 1.38165 * 120.04943 * 0.54328 * 19 18 17 21 21 C 1.38708 * 119.94943 * 359.72664 * 20 19 18 22 22 O 1.35901 * 120.05891 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99720 * 0.02562 * 22 21 20 24 24 C 1.38123 * 119.96897 * 84.70443 * 17 16 13 25 25 H 1.09003 * 109.47590 * 287.55721 * 1 2 3 26 26 H 1.09003 * 109.47604 * 47.55846 * 1 2 3 27 27 H 1.08999 * 109.47396 * 167.56041 * 1 2 3 28 28 H 1.09005 * 109.47363 * 240.00316 * 2 1 3 29 29 H 1.09003 * 109.47314 * 120.00030 * 2 1 3 30 30 H 0.97008 * 119.99822 * 357.27134 * 8 7 5 31 31 H 1.09001 * 109.47266 * 319.35128 * 14 13 3 32 32 H 1.08996 * 109.47220 * 79.35459 * 14 13 3 33 33 H 1.09000 * 109.46698 * 303.49953 * 15 14 13 34 34 H 1.08994 * 109.47174 * 63.50079 * 15 14 13 35 35 H 1.09003 * 109.46986 * 183.50127 * 15 14 13 36 36 H 1.08993 * 109.47023 * 196.52332 * 16 13 3 37 37 H 1.09008 * 109.46681 * 316.52093 * 16 13 3 38 38 H 1.08006 * 119.94382 * 359.97244 * 18 17 16 39 39 H 1.07997 * 119.97180 * 180.24396 * 19 18 17 40 40 H 1.08005 * 120.02696 * 179.74576 * 20 19 18 41 41 H 1.08993 * 109.47578 * 299.99673 * 23 22 21 42 42 H 1.08998 * 109.47034 * 60.00601 * 23 22 21 43 43 H 1.09002 * 109.46579 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.02956 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.0838 1.4589 -0.3136 5 6 1.2155 2.2668 -0.9549 6 1 0.6707 3.1268 -0.5944 7 6 1.1568 1.9231 -2.2888 8 7 2.0307 1.0772 -2.7890 9 14 -0.1642 2.6589 -3.3857 10 1 -0.0112 2.1329 -4.7660 11 1 -1.5042 2.2917 -2.8612 12 1 -0.0271 4.1375 -3.4020 13 7 1.9265 2.0020 1.3536 14 6 0.5581 1.8605 1.8688 15 6 0.3434 2.8425 3.0223 16 6 2.8984 1.3805 2.2632 17 6 4.2681 1.9520 2.0016 18 6 5.1442 1.2894 1.1615 19 6 6.3993 1.8140 0.9150 20 6 6.7854 2.9963 1.5167 21 6 5.9105 3.6600 2.3641 22 8 6.2881 4.8229 2.9574 23 6 7.6008 5.3048 2.6632 24 6 4.6493 3.1343 2.6054 25 1 -0.3634 0.3100 0.9798 26 1 -0.3634 0.6935 -0.7584 27 1 -0.3634 -1.0035 -0.2214 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7406 0.7255 -2.2292 31 1 -0.1540 2.0747 1.0719 32 1 0.4080 0.8418 2.2261 33 1 1.0953 2.6687 3.7921 34 1 0.4323 3.8636 2.6515 35 1 -0.6504 2.6947 3.4450 36 1 2.6112 1.5829 3.2950 37 1 2.9159 0.3036 2.0954 38 1 4.8460 0.3626 0.6941 39 1 7.0803 1.2966 0.2555 40 1 7.7675 3.4037 1.3270 41 1 8.3379 4.5646 2.9742 42 1 7.6917 5.4801 1.5912 43 1 7.7738 6.2379 3.1994 44 1 3.9661 3.6494 3.2645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:55 Heat of formation + Delta-G solvation = -1.216585 kcal Electronic energy + Delta-G solvation = -22597.551101 eV Core-core repulsion = 19515.713099 eV Total energy + Delta-G solvation = -3081.838002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.93396 -38.43944 -36.89448 -33.55130 -31.67426 -30.72787 -30.27636 -28.98668 -27.26002 -26.21773 -24.44385 -23.86005 -22.23709 -21.01818 -20.57001 -19.18583 -17.43891 -16.85432 -15.99346 -15.64833 -15.62547 -14.85543 -14.65776 -14.33153 -13.71439 -13.62645 -13.39498 -13.04399 -12.79692 -12.51004 -12.45689 -12.13708 -11.77696 -11.58298 -11.40675 -11.25387 -11.07279 -10.85442 -10.74664 -10.71321 -10.49037 -10.36239 -10.07413 -9.89933 -9.80138 -9.48285 -8.72664 -8.44745 -8.07695 -7.88172 -7.15089 -6.29748 -3.92126 1.65783 1.79214 3.40772 3.46879 3.47403 3.65927 4.06269 4.55895 4.95945 4.99016 5.12560 5.14799 5.20249 5.39275 5.40567 5.46724 5.55225 5.70473 5.73603 5.81201 5.94177 6.02237 6.05552 6.07539 6.24128 6.31190 6.34783 6.42889 6.47164 6.57941 6.73357 6.76316 6.79999 6.81541 6.98850 7.07015 7.11732 7.23702 7.32266 7.55253 7.62648 7.96746 8.13962 8.44498 8.69139 8.95833 9.71474 11.06686 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.005556 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.873829 B = 5038.761484 C = 5539.355042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.035 0.965 5 C -0.577 4.577 6 H 0.055 0.945 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 1.055 2.945 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.515 5.515 14 C 0.052 3.948 15 C -0.148 4.148 16 C 0.081 3.919 17 C -0.018 4.018 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.216 4.216 21 C 0.118 3.882 22 O -0.321 6.321 23 C 0.030 3.970 24 C -0.130 4.130 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.269 0.731 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.695 2.274 10.900 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C 0.094 3.906 4 H 0.053 0.947 5 C -0.615 4.615 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.543 5.543 9 Si 0.883 3.117 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.239 5.239 14 C -0.076 4.076 15 C -0.206 4.206 16 C -0.046 4.046 17 C -0.019 4.019 18 C -0.160 4.160 19 C -0.101 4.101 20 C -0.235 4.235 21 C 0.074 3.926 22 O -0.235 6.235 23 C -0.066 4.066 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.078 2.889 9.449 11.600 hybrid contribution 0.805 -0.898 1.312 1.782 sum 6.882 1.990 10.761 12.928 Atomic orbital electron populations 1.22288 0.96597 0.99536 1.02674 1.22137 0.96746 1.01075 0.98752 1.19536 0.97154 0.89274 0.84660 0.94727 1.21718 1.31640 1.14059 0.94118 0.92659 1.25577 0.99780 0.96339 0.96179 1.70790 1.13611 1.30881 1.38969 0.83759 0.75758 0.75860 0.76276 1.20992 1.21420 1.21546 1.62244 1.02408 1.56484 1.02745 1.22426 0.92182 0.95668 0.97296 1.21884 0.99570 1.00907 0.98261 1.21123 0.89787 0.96336 0.97402 1.19614 0.94883 0.93273 0.94086 1.20999 0.93944 1.01336 0.99731 1.20832 0.96265 0.94978 0.98007 1.21082 1.00292 0.98963 1.03137 1.18960 0.94114 0.85889 0.93670 1.86045 1.33274 1.37070 1.67074 1.22974 0.82677 0.99489 1.01413 1.20179 0.93827 0.96751 1.04146 0.92980 0.89862 0.96422 0.92400 0.95834 0.92015 0.88751 0.95518 0.93749 0.92359 0.93520 0.91090 0.94069 0.86248 0.86207 0.86135 0.93010 0.92795 0.88662 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.38 37.15 0.31 -3.01 16 2 C -0.15 -3.33 4.94 -26.73 -0.13 -3.46 16 3 C 0.20 4.79 1.84 -68.86 -0.13 4.67 16 4 H 0.03 0.91 5.76 -51.93 -0.30 0.62 16 5 C -0.58 -15.39 5.98 -34.44 -0.21 -15.60 16 6 H 0.06 1.53 7.39 -52.49 -0.39 1.14 16 7 C 0.03 0.71 4.31 -17.82 -0.08 0.64 16 8 N -0.91 -26.30 13.04 55.43 0.72 -25.57 16 9 Si 1.05 24.77 29.92 -169.99 -5.09 19.69 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.52 -10.73 4.29 -229.46 -0.98 -11.71 16 14 C 0.05 0.98 3.49 -3.82 -0.01 0.96 16 15 C -0.15 -2.36 10.06 37.16 0.37 -1.98 16 16 C 0.08 1.47 4.82 -4.97 -0.02 1.44 16 17 C -0.02 -0.32 5.05 -104.65 -0.53 -0.85 16 18 C -0.14 -2.48 8.42 -39.56 -0.33 -2.81 16 19 C -0.08 -1.30 10.04 -39.60 -0.40 -1.70 16 20 C -0.22 -3.24 9.04 -39.43 -0.36 -3.60 16 21 C 0.12 1.93 6.69 -39.22 -0.26 1.66 16 22 O -0.32 -4.75 10.50 -19.43 -0.20 -4.96 16 23 C 0.03 0.30 9.81 101.05 0.99 1.29 16 24 C -0.13 -2.26 9.66 -39.43 -0.38 -2.64 16 25 H 0.05 1.01 4.22 -51.93 -0.22 0.79 16 26 H 0.08 2.00 5.67 -51.93 -0.29 1.70 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 1.43 6.68 -51.93 -0.35 1.08 16 29 H 0.02 0.48 6.12 -51.93 -0.32 0.17 16 30 H 0.27 7.80 6.23 -40.82 -0.25 7.55 16 31 H 0.09 1.97 5.28 -51.93 -0.27 1.70 16 32 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 33 H 0.04 0.65 6.66 -51.93 -0.35 0.31 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.15 6.40 -51.93 -0.33 0.82 16 37 H 0.04 0.75 5.97 -51.92 -0.31 0.44 16 38 H 0.12 2.09 7.97 -52.48 -0.42 1.67 16 39 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.12 1.47 6.30 -52.48 -0.33 1.14 16 41 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 42 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -29.56 332.39 -8.28 -37.84 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.58 Total: 4.68 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -1.16 Total: -24.98 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.26 Total: -37.28 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.56 -8.28 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.624 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds