Wall clock time and date at job start Thu Apr 9 2020 13:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47230 * 2 1 4 4 H 1.09002 * 109.47216 * 197.76658 * 3 2 1 5 5 C 1.50695 * 109.46995 * 317.77021 * 3 2 1 6 6 H 1.07999 * 120.00087 * 120.62100 * 5 3 2 7 7 C 1.37876 * 120.00118 * 300.62331 * 5 3 2 8 8 N 1.31507 * 120.00180 * 344.98629 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 164.98360 * 7 5 3 10 10 H 1.48500 * 109.47174 * 179.97438 * 9 7 5 11 11 H 1.48507 * 109.47110 * 300.00173 * 9 7 5 12 12 H 1.48507 * 109.47084 * 60.00087 * 9 7 5 13 13 N 1.46905 * 109.46885 * 77.76997 * 3 2 1 14 14 C 1.46896 * 110.99976 * 306.27296 * 13 3 2 15 15 C 1.53005 * 109.47035 * 199.35322 * 14 13 3 16 16 C 1.46904 * 110.99967 * 70.22865 * 13 3 2 17 17 C 1.50701 * 109.47308 * 76.51814 * 16 13 3 18 18 C 1.38282 * 119.97477 * 264.43862 * 17 16 13 19 19 C 1.38247 * 120.11336 * 179.72537 * 18 17 16 20 20 C 1.38165 * 120.04943 * 0.54328 * 19 18 17 21 21 C 1.38708 * 119.94943 * 359.72664 * 20 19 18 22 22 O 1.35901 * 120.05891 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99720 * 0.02562 * 22 21 20 24 24 C 1.38123 * 119.96897 * 84.70443 * 17 16 13 25 25 H 1.09003 * 109.47590 * 287.55721 * 1 2 3 26 26 H 1.09003 * 109.47604 * 47.55846 * 1 2 3 27 27 H 1.08999 * 109.47396 * 167.56041 * 1 2 3 28 28 H 1.09005 * 109.47363 * 240.00316 * 2 1 3 29 29 H 1.09003 * 109.47314 * 120.00030 * 2 1 3 30 30 H 0.97008 * 119.99822 * 357.27134 * 8 7 5 31 31 H 1.09001 * 109.47266 * 319.35128 * 14 13 3 32 32 H 1.08996 * 109.47220 * 79.35459 * 14 13 3 33 33 H 1.09000 * 109.46698 * 303.49953 * 15 14 13 34 34 H 1.08994 * 109.47174 * 63.50079 * 15 14 13 35 35 H 1.09003 * 109.46986 * 183.50127 * 15 14 13 36 36 H 1.08993 * 109.47023 * 196.52332 * 16 13 3 37 37 H 1.09008 * 109.46681 * 316.52093 * 16 13 3 38 38 H 1.08006 * 119.94382 * 359.97244 * 18 17 16 39 39 H 1.07997 * 119.97180 * 180.24396 * 19 18 17 40 40 H 1.08005 * 120.02696 * 179.74576 * 20 19 18 41 41 H 1.08993 * 109.47578 * 299.99673 * 23 22 21 42 42 H 1.08998 * 109.47034 * 60.00601 * 23 22 21 43 43 H 1.09002 * 109.46579 * 179.97438 * 23 22 21 44 44 H 1.08007 * 120.02956 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.0838 1.4589 -0.3136 5 6 1.2155 2.2668 -0.9549 6 1 0.6707 3.1268 -0.5944 7 6 1.1568 1.9231 -2.2888 8 7 2.0307 1.0772 -2.7890 9 14 -0.1642 2.6589 -3.3857 10 1 -0.0112 2.1329 -4.7660 11 1 -1.5042 2.2917 -2.8612 12 1 -0.0271 4.1375 -3.4020 13 7 1.9265 2.0020 1.3536 14 6 0.5581 1.8605 1.8688 15 6 0.3434 2.8425 3.0223 16 6 2.8984 1.3805 2.2632 17 6 4.2681 1.9520 2.0016 18 6 5.1442 1.2894 1.1615 19 6 6.3993 1.8140 0.9150 20 6 6.7854 2.9963 1.5167 21 6 5.9105 3.6600 2.3641 22 8 6.2881 4.8229 2.9574 23 6 7.6008 5.3048 2.6632 24 6 4.6493 3.1343 2.6054 25 1 -0.3634 0.3100 0.9798 26 1 -0.3634 0.6935 -0.7584 27 1 -0.3634 -1.0035 -0.2214 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.7406 0.7255 -2.2292 31 1 -0.1540 2.0747 1.0719 32 1 0.4080 0.8418 2.2261 33 1 1.0953 2.6687 3.7921 34 1 0.4323 3.8636 2.6515 35 1 -0.6504 2.6947 3.4450 36 1 2.6112 1.5829 3.2950 37 1 2.9159 0.3036 2.0954 38 1 4.8460 0.3626 0.6941 39 1 7.0803 1.2966 0.2555 40 1 7.7675 3.4037 1.3270 41 1 8.3379 4.5646 2.9742 42 1 7.6917 5.4801 1.5912 43 1 7.7738 6.2379 3.1994 44 1 3.9661 3.6494 3.2645 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174687.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:54 Heat of formation + Delta-G solvation = -18.235374 kcal Electronic energy + Delta-G solvation = -22598.289091 eV Core-core repulsion = 19515.713099 eV Total energy + Delta-G solvation = -3082.575992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16066 -39.96719 -38.19948 -35.38534 -33.09798 -32.49624 -31.53000 -30.45429 -28.34901 -27.81781 -25.94792 -25.76431 -23.50344 -22.35222 -22.20446 -20.86402 -18.79080 -18.60240 -17.19539 -16.92964 -16.67956 -16.50326 -16.29747 -15.80425 -15.55149 -14.91007 -14.79009 -14.62262 -14.25239 -13.98953 -13.84924 -13.44525 -13.26084 -13.05553 -12.83537 -12.67028 -12.60905 -12.51855 -12.23244 -12.12507 -11.96508 -11.94379 -11.75159 -11.56251 -11.42903 -11.21578 -10.70264 -10.16600 -9.75748 -9.13771 -8.78772 -8.47907 -6.09161 0.38170 0.50989 1.55298 1.60834 1.79473 2.37944 2.60848 2.77124 3.28358 3.47388 3.86324 3.91010 4.13373 4.20544 4.26253 4.34055 4.38757 4.40147 4.41681 4.43491 4.55102 4.60889 4.65113 4.70269 4.72675 4.81213 4.82338 5.03586 5.04723 5.10172 5.21065 5.30614 5.33245 5.36326 5.46613 5.47749 5.52182 5.71169 5.73695 5.81974 6.09059 6.21819 6.48711 6.61021 6.66971 6.88688 7.61067 8.88946 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.005556 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.873829 B = 5038.761484 C = 5539.355042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.208 3.792 4 H 0.006 0.994 5 C -0.576 4.576 6 H 0.042 0.958 7 C -0.016 4.016 8 N -0.932 5.932 9 Si 1.093 2.907 10 H -0.289 1.289 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.528 5.528 14 C 0.051 3.949 15 C -0.139 4.139 16 C 0.086 3.914 17 C -0.034 4.034 18 C -0.163 4.163 19 C -0.086 4.086 20 C -0.213 4.213 21 C 0.115 3.885 22 O -0.336 6.336 23 C 0.019 3.981 24 C -0.147 4.147 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.257 0.743 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.038 0.962 38 H 0.109 0.891 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.121 0.879 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.911 3.079 12.241 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.100 3.900 4 H 0.023 0.977 5 C -0.614 4.614 6 H 0.060 0.940 7 C -0.215 4.215 8 N -0.569 5.569 9 Si 0.917 3.083 10 H -0.215 1.215 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.197 4.197 16 C -0.041 4.041 17 C -0.035 4.035 18 C -0.182 4.182 19 C -0.104 4.104 20 C -0.231 4.231 21 C 0.070 3.930 22 O -0.250 6.250 23 C -0.076 4.076 24 C -0.166 4.166 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.127 0.873 39 H 0.160 0.840 40 H 0.170 0.830 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.293 3.705 10.821 13.054 hybrid contribution 0.841 -1.079 0.969 1.676 sum 7.135 2.626 11.790 14.028 Atomic orbital electron populations 1.22205 0.95517 0.99634 1.03110 1.21992 0.97580 1.00021 0.98170 1.19244 0.94861 0.89713 0.86149 0.97665 1.21915 1.31108 1.13659 0.94714 0.93989 1.26688 1.00721 0.96244 0.97880 1.70898 1.14437 1.32643 1.38952 0.83249 0.74665 0.75717 0.74634 1.21508 1.19416 1.20527 1.62165 1.04067 1.56874 1.01977 1.22420 0.90502 0.97147 0.97584 1.21798 1.01528 0.99118 0.97220 1.21136 0.89390 0.95888 0.97725 1.19664 0.94951 0.93975 0.94918 1.21079 0.95159 1.01523 1.00463 1.21144 0.95882 0.95346 0.98015 1.21415 1.01405 0.98298 1.02029 1.19090 0.93933 0.86434 0.93570 1.86031 1.35745 1.36260 1.66983 1.23335 0.80921 1.00993 1.02310 1.20279 0.94806 0.96835 1.04675 0.90757 0.92449 0.95171 0.95234 0.94063 0.93298 0.91072 0.94543 0.92488 0.93572 0.90948 0.88977 0.94430 0.87337 0.83967 0.83012 0.91362 0.92324 0.86116 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.30 8.38 71.98 0.60 -5.70 16 2 C -0.14 -6.31 4.94 30.59 0.15 -6.16 16 3 C 0.21 10.16 1.84 44.17 0.08 10.24 16 4 H 0.01 0.30 5.76 -2.39 -0.01 0.29 16 5 C -0.58 -31.29 5.98 25.60 0.15 -31.14 16 6 H 0.04 2.35 7.39 -2.91 -0.02 2.33 16 7 C -0.02 -0.88 4.31 84.66 0.36 -0.52 16 8 N -0.93 -55.52 13.04 21.45 0.28 -55.24 16 9 Si 1.09 50.21 29.92 68.60 2.05 52.27 16 10 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.53 -21.92 4.29 -879.89 -3.77 -25.69 16 14 C 0.05 1.85 3.49 86.31 0.30 2.15 16 15 C -0.14 -4.11 10.06 71.98 0.72 -3.39 16 16 C 0.09 3.07 4.82 85.56 0.41 3.49 16 17 C -0.03 -1.24 5.05 -19.88 -0.10 -1.35 16 18 C -0.16 -5.84 8.42 22.28 0.19 -5.65 16 19 C -0.09 -2.64 10.04 22.25 0.22 -2.41 16 20 C -0.21 -6.02 9.04 22.36 0.20 -5.82 16 21 C 0.11 3.61 6.69 22.51 0.15 3.76 16 22 O -0.34 -9.36 10.50 -92.44 -0.97 -10.33 16 23 C 0.02 0.32 9.81 113.37 1.11 1.44 16 24 C -0.15 -5.05 9.66 22.37 0.22 -4.84 16 25 H 0.07 2.79 4.22 -2.39 -0.01 2.78 16 26 H 0.06 2.75 5.67 -2.39 -0.01 2.73 16 27 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 1.49 6.68 -2.38 -0.02 1.48 16 29 H 0.04 1.70 6.12 -2.39 -0.01 1.69 16 30 H 0.26 15.56 6.23 -92.70 -0.58 14.98 16 31 H 0.07 2.94 5.28 -2.39 -0.01 2.92 16 32 H 0.04 1.26 6.14 -2.39 -0.01 1.24 16 33 H 0.06 1.54 6.66 -2.39 -0.02 1.52 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.85 6.40 -2.39 -0.02 2.83 16 37 H 0.04 1.36 5.97 -2.38 -0.01 1.34 16 38 H 0.11 3.99 7.97 -2.91 -0.02 3.97 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 40 H 0.15 3.24 6.30 -2.91 -0.02 3.22 16 41 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 42 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 43 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -64.72 332.39 3.55 -61.17 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.18 Total: 23.72 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 4.78 Total: -45.89 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.50 Total: -80.93 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.97 Total: -10.33 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.27 kcal Total: -64.72 3.55 -61.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174687.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.937 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds