Wall clock time and date at job start Thu Apr 9 2020 13:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37098 * 119.99918 * 2 1 4 4 H 1.08005 * 119.99823 * 204.39704 * 3 2 1 5 5 C 1.38954 * 120.00162 * 24.40249 * 3 2 1 6 6 N 1.31412 * 119.99590 * 12.64711 * 5 3 2 7 7 Si 1.86798 * 120.00032 * 192.65540 * 5 3 2 8 8 H 1.48496 * 109.47113 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47184 * 119.99624 * 7 5 3 10 10 H 1.48498 * 109.46995 * 239.99470 * 7 5 3 11 11 C 1.34776 * 120.00198 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00348 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99815 * 359.97438 * 11 2 1 14 14 C 1.53004 * 109.47185 * 180.02562 * 13 11 2 15 15 C 1.52999 * 109.47359 * 64.99426 * 14 13 11 16 16 C 1.52997 * 109.46790 * 60.00299 * 15 14 13 17 17 C 1.52998 * 109.47369 * 60.00061 * 16 15 14 18 18 C 1.53001 * 109.47251 * 59.99689 * 17 16 15 19 19 C 1.53003 * 109.46992 * 300.00167 * 18 17 16 20 20 C 1.52998 * 109.47025 * 60.00146 * 19 18 17 21 21 C 1.52997 * 109.47290 * 300.00104 * 19 18 17 22 22 C 1.52997 * 109.47333 * 59.99676 * 21 19 18 23 23 C 1.52997 * 109.47393 * 300.00125 * 22 21 19 24 24 H 1.08995 * 109.47053 * 265.85920 * 1 2 3 25 25 H 1.09003 * 109.47510 * 25.86162 * 1 2 3 26 26 H 1.09007 * 109.47069 * 145.85606 * 1 2 3 27 27 H 0.96999 * 119.99483 * 179.97438 * 6 5 3 28 28 H 1.08997 * 109.47419 * 59.99834 * 13 11 2 29 29 H 1.09001 * 109.46928 * 299.99637 * 13 11 2 30 30 H 1.09003 * 109.46584 * 304.99882 * 14 13 11 31 31 H 1.09003 * 109.47167 * 300.00384 * 15 14 13 32 32 H 1.09004 * 109.47058 * 180.02562 * 16 15 14 33 33 H 1.09003 * 109.47791 * 299.99945 * 16 15 14 34 34 H 1.08997 * 109.47755 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.47372 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.46808 * 60.00191 * 18 17 16 37 37 H 1.09000 * 109.46698 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47427 * 59.99576 * 20 19 18 39 39 H 1.09003 * 109.47367 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.46804 * 299.99863 * 21 19 18 41 41 H 1.08998 * 109.47307 * 180.02562 * 21 19 18 42 42 H 1.09001 * 109.47191 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.47263 * 179.97438 * 23 22 21 44 44 H 1.09003 * 109.47196 * 300.00089 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1581 1.2291 -0.3864 5 6 1.5487 2.3370 0.4972 6 7 0.4347 2.2490 1.1886 7 14 2.3234 4.0074 0.1825 8 1 3.5642 3.8352 -0.6149 9 1 1.3681 4.8630 -0.5662 10 1 2.6540 4.6517 1.4789 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3796 -3.6352 -0.0005 15 6 3.1745 -3.6267 1.3067 16 6 2.2143 -3.7767 2.4884 17 6 1.4535 -5.0982 2.3628 18 6 2.4477 -6.2611 2.3627 19 6 3.4079 -6.1111 1.1809 20 6 4.1687 -4.7896 1.3066 21 6 2.6130 -6.1195 -0.1263 22 6 1.6188 -4.9567 -0.1262 23 6 0.6585 -5.1067 1.0554 24 1 -0.3633 -0.0742 1.0249 25 1 -0.3634 0.9247 -0.4483 26 1 -0.3633 -0.8506 -0.5768 27 1 0.0149 3.0515 1.5359 28 1 0.7583 -2.5299 -0.8902 29 1 0.7591 -2.5302 0.8897 30 1 3.0637 -3.5283 -0.8424 31 1 3.7165 -2.6852 1.3963 32 1 2.7805 -3.7702 3.4198 33 1 1.5059 -2.9483 2.4885 34 1 0.7690 -5.2049 3.2043 35 1 1.9057 -7.2025 2.2727 36 1 3.0140 -6.2550 3.2941 37 1 4.1164 -6.9393 1.1812 38 1 4.7350 -4.7835 2.2380 39 1 4.8531 -4.6829 0.4650 40 1 2.0710 -7.0610 -0.2158 41 1 3.2971 -6.0131 -0.9682 42 1 1.0528 -4.9624 -1.0578 43 1 -0.0495 -4.2780 1.0557 44 1 0.1165 -6.0481 0.9659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216586462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:24 Heat of formation + Delta-G solvation = -78.328968 kcal Electronic energy + Delta-G solvation = -23354.524925 eV Core-core repulsion = 20269.343079 eV Total energy + Delta-G solvation = -3085.181846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.49530 -40.10037 -36.70492 -34.64630 -33.59504 -33.43469 -33.36241 -29.86214 -28.05839 -26.68844 -26.51478 -25.08871 -22.35729 -22.22641 -21.91293 -20.28481 -18.85628 -18.11871 -17.67513 -16.76343 -16.30919 -15.99792 -15.83118 -15.27511 -15.21946 -14.96989 -14.43540 -14.20779 -14.10866 -13.90530 -13.60226 -13.43843 -13.20202 -13.12809 -13.01984 -12.96563 -12.68976 -12.47843 -12.34859 -12.13516 -11.77819 -11.70281 -11.64376 -11.54317 -11.42901 -11.01252 -10.57195 -10.41838 -10.35915 -10.02768 -9.61903 -8.33367 -5.97795 1.34391 1.38479 1.52563 2.09262 2.28049 3.09136 3.13626 3.65286 3.69188 3.72610 4.08276 4.24297 4.28565 4.30440 4.40322 4.40792 4.47865 4.50416 4.51544 4.61615 4.66163 4.74155 4.76396 4.87560 4.93647 4.95303 5.00224 5.06576 5.14156 5.21542 5.25084 5.25714 5.31293 5.33114 5.35495 5.36697 5.41075 5.44612 5.64676 5.71201 5.76712 5.81157 6.13551 6.52282 7.20430 7.52159 8.10477 8.70157 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.033796 B = 0.004807 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.298144 B = 5823.516010 C = 5990.812121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.471 5.471 3 C -0.341 4.341 4 H 0.067 0.933 5 C -0.004 4.004 6 N -0.899 5.899 7 Si 0.987 3.013 8 H -0.275 1.275 9 H -0.264 1.264 10 H -0.276 1.276 11 C 0.440 3.560 12 O -0.625 6.625 13 C -0.116 4.116 14 C -0.048 4.048 15 C -0.086 4.086 16 C -0.108 4.108 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.083 4.083 20 C -0.103 4.103 21 C -0.103 4.103 22 C -0.078 4.078 23 C -0.107 4.107 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.272 0.728 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -17.451 0.445 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.191 5.191 3 C -0.470 4.470 4 H 0.085 0.915 5 C -0.205 4.205 6 N -0.538 5.538 7 Si 0.811 3.189 8 H -0.200 1.200 9 H -0.189 1.189 10 H -0.202 1.202 11 C 0.230 3.770 12 O -0.512 6.512 13 C -0.156 4.156 14 C -0.067 4.067 15 C -0.105 4.105 16 C -0.146 4.146 17 C -0.100 4.100 18 C -0.139 4.139 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.096 4.096 23 C -0.145 4.145 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.389 -17.298 0.534 17.470 hybrid contribution 0.565 1.734 0.014 1.824 sum -1.824 -15.564 0.548 15.680 Atomic orbital electron populations 1.21373 0.79680 1.00563 1.00305 1.43901 1.06605 1.04834 1.63716 1.19595 1.00201 0.86420 1.40749 0.91543 1.26063 0.97110 1.02870 0.94496 1.70072 1.19855 1.30537 1.33371 0.84976 0.78322 0.77463 0.78165 1.19988 1.18876 1.20196 1.21216 0.88094 0.86423 0.81223 1.90433 1.16150 1.87984 1.56658 1.21697 0.98930 0.91132 1.03817 1.20726 0.95511 0.93342 0.97169 1.21048 0.96464 0.98095 0.94872 1.21547 0.97892 0.97895 0.97222 1.21047 0.96840 0.93879 0.98258 1.21516 0.96765 0.98010 0.97584 1.21063 0.97088 0.96267 0.95663 1.21491 0.96999 0.94905 1.00705 1.21520 0.97558 0.98158 0.96836 1.21099 0.96351 0.93082 0.99110 1.21588 0.96984 1.02422 0.93457 0.94177 0.92636 0.91629 0.91829 0.88842 0.88916 0.93663 0.94025 0.92925 0.94104 0.90486 0.90019 0.92172 0.90088 0.92546 0.93481 0.89739 0.92659 0.90374 0.92294 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.64 8.44 127.77 1.08 6.72 16 2 N -0.47 -25.26 3.01 -658.89 -1.98 -27.24 16 3 C -0.34 -20.17 9.24 84.04 0.78 -19.39 16 4 H 0.07 4.21 7.45 -2.91 -0.02 4.19 16 5 C 0.00 -0.23 5.04 84.93 0.43 0.20 16 6 N -0.90 -49.15 10.83 21.66 0.23 -48.92 16 7 Si 0.99 43.88 29.57 68.60 2.03 45.91 16 8 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 C 0.44 22.23 7.34 87.66 0.64 22.87 16 12 O -0.62 -36.21 13.68 -3.07 -0.04 -36.25 16 13 C -0.12 -4.27 3.08 29.85 0.09 -4.18 16 14 C -0.05 -1.61 1.58 -10.79 -0.02 -1.62 16 15 C -0.09 -3.00 2.46 -10.79 -0.03 -3.03 16 16 C -0.11 -3.31 4.92 30.59 0.15 -3.16 16 17 C -0.08 -1.84 3.19 -10.79 -0.03 -1.87 16 18 C -0.10 -1.93 5.19 30.60 0.16 -1.77 16 19 C -0.08 -1.75 3.19 -10.79 -0.03 -1.78 16 20 C -0.10 -2.94 5.19 30.59 0.16 -2.79 16 21 C -0.10 -2.10 5.19 30.59 0.16 -1.94 16 22 C -0.08 -1.84 2.72 -10.80 -0.03 -1.87 16 23 C -0.11 -2.26 4.92 30.60 0.15 -2.11 16 24 H 0.04 1.87 7.83 -2.39 -0.02 1.85 16 25 H 0.05 2.68 6.80 -2.39 -0.02 2.66 16 26 H 0.07 2.38 6.61 -2.38 -0.02 2.37 16 27 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 28 H 0.09 3.01 7.41 -2.39 -0.02 2.99 16 29 H 0.09 3.24 4.79 -2.39 -0.01 3.23 16 30 H 0.04 1.72 7.95 -2.39 -0.02 1.70 16 31 H 0.04 1.90 5.95 -2.39 -0.01 1.88 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.04 1.41 6.32 -2.39 -0.02 1.40 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.32 6.54 -2.39 -0.02 1.31 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -68.41 315.66 4.86 -63.55 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.97 Total: 18.68 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 3.65 Total: -15.73 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.75 Total: -76.16 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -0.04 Total: -36.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -68.41 4.86 -63.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216586462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.778 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds