Wall clock time and date at job start Thu Apr 9 2020 13:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39875 * 125.89964 * 2 1 4 4 C 1.35313 * 107.92141 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.13027 * 179.97438 * 4 3 2 6 6 C 1.53114 * 109.52784 * 144.99651 * 5 4 3 7 7 C 1.53035 * 109.28178 * 177.62012 * 6 5 4 8 8 N 1.46845 * 109.52279 * 300.82608 * 7 6 5 9 9 C 1.46906 * 110.99877 * 185.83754 * 8 7 6 10 10 C 1.52993 * 109.47378 * 169.99905 * 9 8 7 11 11 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47239 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99798 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47482 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47028 * 120.00411 * 16 14 12 19 19 H 1.48497 * 109.47236 * 240.00150 * 16 14 12 20 20 C 1.46845 * 111.20118 * 61.73958 * 8 7 6 21 21 C 1.53037 * 109.52225 * 298.25692 * 20 8 7 22 22 N 1.34954 * 107.74673 * 0.22638 * 4 3 2 23 23 H 0.96998 * 126.03977 * 179.77841 * 22 4 3 24 24 N 1.30840 * 125.89834 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46688 * 90.00052 * 1 2 3 26 26 H 1.09000 * 109.47027 * 210.00089 * 1 2 3 27 27 H 1.09004 * 109.47013 * 330.00216 * 1 2 3 28 28 H 1.08000 * 126.03866 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.52117 * 24.86971 * 5 4 3 30 30 H 1.08996 * 109.50286 * 57.68106 * 6 5 4 31 31 H 1.08997 * 109.53662 * 297.58634 * 6 5 4 32 32 H 1.08995 * 109.46542 * 180.80231 * 7 6 5 33 33 H 1.09005 * 109.44912 * 60.83149 * 7 6 5 34 34 H 1.09004 * 109.47040 * 289.99694 * 9 8 7 35 35 H 1.09000 * 109.47033 * 49.99646 * 9 8 7 36 36 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 37 37 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 38 38 H 1.08996 * 109.47261 * 300.00171 * 11 10 9 39 39 H 1.09000 * 109.46870 * 59.99782 * 11 10 9 40 40 H 0.97001 * 120.00663 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.46500 * 58.27251 * 20 8 7 42 42 H 1.08995 * 109.46400 * 178.24044 * 20 8 7 43 43 H 1.09001 * 109.50550 * 299.23861 * 21 20 8 44 44 H 1.09002 * 109.53767 * 179.14167 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8351 1.5989 0.0002 6 6 5.9425 0.9419 0.8287 7 6 7.1985 1.8145 0.7757 8 7 7.6313 1.9675 -0.6191 9 6 8.9116 2.6836 -0.6976 10 6 9.4521 2.6070 -2.1268 11 6 10.7852 3.3533 -2.2087 12 6 11.3178 3.2773 -3.6163 13 1 10.7609 2.7499 -4.3767 14 6 12.5156 3.8821 -3.9338 15 7 13.1935 4.5247 -3.0081 16 14 13.1754 3.7885 -5.6788 17 1 12.2312 3.0148 -6.5243 18 1 13.3200 5.1608 -6.2276 19 1 14.4995 3.1162 -5.6721 20 6 6.6027 2.6390 -1.4237 21 6 5.3289 1.7909 -1.4364 22 7 3.6088 -0.6341 -0.0042 23 1 4.3908 -1.2080 -0.0080 24 7 2.2742 -1.0599 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 4.5836 2.5678 0.4316 30 1 6.1666 -0.0435 0.4203 31 1 5.6129 0.8408 1.8627 32 1 7.9934 1.3424 1.3530 33 1 6.9772 2.7952 1.1970 34 1 8.7618 3.7273 -0.4212 35 1 9.6265 2.2257 -0.0138 36 1 9.6020 1.5633 -2.4031 37 1 8.7372 3.0648 -2.8106 38 1 10.6350 4.3969 -1.9325 39 1 11.5002 2.8958 -1.5248 40 1 14.0363 4.9499 -3.2312 41 1 6.3843 3.6158 -0.9921 42 1 6.9648 2.7657 -2.4439 43 1 5.5433 0.8189 -1.8805 44 1 4.5602 2.2964 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271666456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:57 Heat of formation + Delta-G solvation = 44.752929 kcal Electronic energy + Delta-G solvation = -21020.254730 eV Core-core repulsion = 17972.702866 eV Total energy + Delta-G solvation = -3047.551863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -41.55597 -38.99273 -35.26778 -33.48534 -32.63544 -31.37521 -30.81523 -29.56374 -28.04569 -26.57484 -24.39756 -23.25754 -22.23499 -20.75481 -20.41248 -19.84879 -19.39050 -17.64217 -16.37528 -15.52908 -15.27241 -14.99710 -14.72507 -14.47843 -14.31793 -13.91376 -13.62475 -13.59790 -13.47098 -13.00638 -12.92124 -12.53838 -12.32610 -12.16778 -11.76027 -11.48175 -11.29556 -11.14963 -10.92977 -10.79875 -10.71769 -10.63606 -10.44951 -10.37587 -9.61254 -9.42536 -9.33481 -9.04556 -8.76917 -8.34807 -8.11489 -5.99911 -4.01820 1.69576 2.56561 2.68840 3.30990 3.38485 3.42921 4.03085 4.23313 4.45727 4.47845 4.54863 4.69592 4.94583 5.05372 5.14641 5.25702 5.34625 5.36039 5.38160 5.41785 5.48204 5.54867 5.58631 5.60919 5.68829 5.77900 5.79823 5.85713 5.93819 6.05697 6.06882 6.19626 6.29997 6.48069 6.69098 6.75413 7.10778 7.11006 7.33344 7.36015 7.52465 7.68583 7.83069 8.00602 8.44009 9.05647 9.62239 11.11554 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002644 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.168879 B =10586.134451 C =10945.857593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.073 3.927 3 C -0.275 4.275 4 C 0.109 3.891 5 C -0.029 4.029 6 C -0.113 4.113 7 C 0.056 3.944 8 N -0.540 5.540 9 C 0.057 3.943 10 C -0.105 4.105 11 C 0.021 3.979 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.053 3.947 21 C -0.105 4.105 22 N -0.471 5.471 23 H 0.437 0.563 24 N -0.300 5.300 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.145 0.855 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.103 -6.279 8.954 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.093 4.093 3 C -0.304 4.304 4 C -0.020 4.020 5 C -0.049 4.049 6 C -0.151 4.151 7 C -0.073 4.073 8 N -0.265 5.265 9 C -0.070 4.070 10 C -0.143 4.143 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.075 4.075 21 C -0.144 4.144 22 N -0.179 5.179 23 H 0.282 0.718 24 N -0.124 5.124 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.869 -7.915 8.795 24.865 hybrid contribution 0.843 1.442 -0.577 1.767 sum -21.027 -6.473 8.218 23.485 Atomic orbital electron populations 1.20169 0.86838 1.03184 1.02938 1.22319 0.96968 0.90794 0.99258 1.21119 0.90936 0.99812 1.18544 1.21093 0.96746 0.84865 0.99315 1.20050 0.89732 0.97241 0.97925 1.21658 0.94260 0.99686 0.99468 1.22027 0.96620 0.98237 0.90371 1.62012 1.03583 1.51678 1.09180 1.22284 0.89003 0.95339 1.00400 1.21658 0.98998 1.01083 0.92526 1.19079 0.90518 0.95064 0.96986 1.21286 1.05320 1.33464 0.95483 0.92647 1.25035 0.96975 0.95409 0.97165 1.69970 1.15153 1.35607 1.32869 0.86547 0.78869 0.77713 0.84947 1.19734 1.21052 1.21022 1.22130 0.91077 0.94622 0.99714 1.21642 0.96817 1.01546 0.94363 1.46275 1.07156 1.05040 1.59398 0.71815 1.77277 0.86601 1.22521 1.25967 0.90555 0.91040 0.90476 0.83732 0.88786 0.91348 0.91306 0.90484 0.94900 0.95278 0.91192 0.92632 0.93449 0.96835 0.96632 0.93098 0.94922 0.89424 0.91077 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 2 C 0.07 0.77 7.22 -82.40 -0.59 0.18 16 3 C -0.27 -2.79 10.65 -40.01 -0.43 -3.22 16 4 C 0.11 1.10 5.92 -82.26 -0.49 0.62 16 5 C -0.03 -0.27 2.64 -91.65 -0.24 -0.51 16 6 C -0.11 -1.05 5.18 -26.65 -0.14 -1.18 16 7 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 8 N -0.54 -7.52 4.66 -234.68 -1.09 -8.62 16 9 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 10 C -0.10 -2.14 5.08 -26.74 -0.14 -2.27 16 11 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 12 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 16 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 C 0.05 0.67 5.29 -3.83 -0.02 0.65 16 21 C -0.11 -1.10 5.36 -26.65 -0.14 -1.25 16 22 N -0.47 -4.95 7.14 33.48 0.24 -4.71 16 23 H 0.44 3.77 8.13 -182.61 -1.48 2.28 16 24 N -0.30 -3.64 12.70 33.67 0.43 -3.21 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.64 7.36 -51.93 -0.38 0.25 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 1.23 6.21 -51.93 -0.32 0.91 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -31.74 350.45 -10.64 -42.39 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.81 Total: -2.86 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.40 Total: -18.71 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.31 Total: -42.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.74 -10.64 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271666456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.139 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds