Wall clock time and date at job start Thu Apr 9 2020 13:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39875 * 125.89964 * 2 1 4 4 C 1.35313 * 107.92141 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.13027 * 179.97438 * 4 3 2 6 6 C 1.53114 * 109.52784 * 144.99651 * 5 4 3 7 7 C 1.53035 * 109.28178 * 177.62012 * 6 5 4 8 8 N 1.46845 * 109.52279 * 300.82608 * 7 6 5 9 9 C 1.46906 * 110.99877 * 185.83754 * 8 7 6 10 10 C 1.52993 * 109.47378 * 169.99905 * 9 8 7 11 11 C 1.52996 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47239 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99960 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99798 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00253 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99629 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47482 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47028 * 120.00411 * 16 14 12 19 19 H 1.48497 * 109.47236 * 240.00150 * 16 14 12 20 20 C 1.46845 * 111.20118 * 61.73958 * 8 7 6 21 21 C 1.53037 * 109.52225 * 298.25692 * 20 8 7 22 22 N 1.34954 * 107.74673 * 0.22638 * 4 3 2 23 23 H 0.96998 * 126.03977 * 179.77841 * 22 4 3 24 24 N 1.30840 * 125.89834 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.46688 * 90.00052 * 1 2 3 26 26 H 1.09000 * 109.47027 * 210.00089 * 1 2 3 27 27 H 1.09004 * 109.47013 * 330.00216 * 1 2 3 28 28 H 1.08000 * 126.03866 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.52117 * 24.86971 * 5 4 3 30 30 H 1.08996 * 109.50286 * 57.68106 * 6 5 4 31 31 H 1.08997 * 109.53662 * 297.58634 * 6 5 4 32 32 H 1.08995 * 109.46542 * 180.80231 * 7 6 5 33 33 H 1.09005 * 109.44912 * 60.83149 * 7 6 5 34 34 H 1.09004 * 109.47040 * 289.99694 * 9 8 7 35 35 H 1.09000 * 109.47033 * 49.99646 * 9 8 7 36 36 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 37 37 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 38 38 H 1.08996 * 109.47261 * 300.00171 * 11 10 9 39 39 H 1.09000 * 109.46870 * 59.99782 * 11 10 9 40 40 H 0.97001 * 120.00663 * 179.97438 * 15 14 12 41 41 H 1.08998 * 109.46500 * 58.27251 * 20 8 7 42 42 H 1.08995 * 109.46400 * 178.24044 * 20 8 7 43 43 H 1.09001 * 109.50550 * 299.23861 * 21 20 8 44 44 H 1.09002 * 109.53767 * 179.14167 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8351 1.5989 0.0002 6 6 5.9425 0.9419 0.8287 7 6 7.1985 1.8145 0.7757 8 7 7.6313 1.9675 -0.6191 9 6 8.9116 2.6836 -0.6976 10 6 9.4521 2.6070 -2.1268 11 6 10.7852 3.3533 -2.2087 12 6 11.3178 3.2773 -3.6163 13 1 10.7609 2.7499 -4.3767 14 6 12.5156 3.8821 -3.9338 15 7 13.1935 4.5247 -3.0081 16 14 13.1754 3.7885 -5.6788 17 1 12.2312 3.0148 -6.5243 18 1 13.3200 5.1608 -6.2276 19 1 14.4995 3.1162 -5.6721 20 6 6.6027 2.6390 -1.4237 21 6 5.3289 1.7909 -1.4364 22 7 3.6088 -0.6341 -0.0042 23 1 4.3908 -1.2080 -0.0080 24 7 2.2742 -1.0599 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9923 2.1598 -0.0004 29 1 4.5836 2.5678 0.4316 30 1 6.1666 -0.0435 0.4203 31 1 5.6129 0.8408 1.8627 32 1 7.9934 1.3424 1.3530 33 1 6.9772 2.7952 1.1970 34 1 8.7618 3.7273 -0.4212 35 1 9.6265 2.2257 -0.0138 36 1 9.6020 1.5633 -2.4031 37 1 8.7372 3.0648 -2.8106 38 1 10.6350 4.3969 -1.9325 39 1 11.5002 2.8958 -1.5248 40 1 14.0363 4.9499 -3.2312 41 1 6.3843 3.6158 -0.9921 42 1 6.9648 2.7657 -2.4439 43 1 5.5433 0.8189 -1.8805 44 1 4.5602 2.2964 -2.0209 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271666456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:56 Heat of formation + Delta-G solvation = 25.276536 kcal Electronic energy + Delta-G solvation = -21021.099290 eV Core-core repulsion = 17972.702866 eV Total energy + Delta-G solvation = -3048.396423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32039 -39.99645 -36.60163 -35.14940 -33.64251 -32.79701 -31.80974 -30.58306 -28.74320 -28.18938 -25.76015 -24.21552 -23.75178 -21.79155 -21.37321 -21.16916 -20.18264 -18.55307 -18.37275 -16.78065 -16.41564 -16.32324 -15.86284 -15.59871 -15.46977 -14.95950 -14.59641 -14.54334 -14.40222 -14.22115 -13.65689 -13.63232 -13.52397 -13.33242 -13.13506 -12.94696 -12.69212 -12.46593 -12.34065 -12.19578 -12.01514 -11.75668 -11.57137 -11.41059 -11.33193 -11.26041 -10.99841 -10.55503 -10.19586 -9.54173 -9.23682 -8.20615 -6.31237 0.92272 1.39451 1.39720 1.53201 1.82163 1.97304 2.40386 2.95041 3.12512 3.45058 3.69861 3.83160 3.87259 4.13413 4.21084 4.26848 4.35696 4.39857 4.47287 4.51993 4.68542 4.69661 4.74380 4.80197 4.85969 4.89089 4.93382 4.95215 4.96934 5.03533 5.08794 5.12470 5.15423 5.22851 5.30597 5.39231 5.52813 5.75396 5.78775 5.86431 6.10947 6.24171 6.28752 6.40096 6.76483 6.85920 7.37911 8.91404 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002644 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.168879 B =10586.134451 C =10945.857593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.064 3.936 3 C -0.284 4.284 4 C 0.109 3.891 5 C -0.020 4.020 6 C -0.106 4.106 7 C 0.054 3.946 8 N -0.546 5.546 9 C 0.069 3.931 10 C -0.089 4.089 11 C 0.025 3.975 12 C -0.540 4.540 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.052 3.948 21 C -0.096 4.096 22 N -0.473 5.473 23 H 0.442 0.558 24 N -0.334 5.334 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.050 0.950 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.554 -6.389 8.708 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.313 4.313 4 C -0.021 4.021 5 C -0.040 4.040 6 C -0.144 4.144 7 C -0.073 4.073 8 N -0.271 5.271 9 C -0.059 4.059 10 C -0.127 4.127 11 C -0.013 4.013 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.200 4.200 15 N -0.574 5.574 16 Si 0.789 3.211 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.076 4.076 21 C -0.135 4.135 22 N -0.182 5.182 23 H 0.287 0.713 24 N -0.159 5.159 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.180 0.820 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.340 -8.038 8.555 26.126 hybrid contribution 1.283 1.487 -0.470 2.020 sum -22.057 -6.551 8.085 24.388 Atomic orbital electron populations 1.20296 0.84754 1.04196 1.03820 1.22909 0.98483 0.90579 0.98255 1.21442 0.90906 1.00645 1.18347 1.21207 0.97038 0.84732 0.99128 1.19980 0.89352 0.97653 0.97018 1.21609 0.93170 0.99125 1.00457 1.22110 0.97611 0.99062 0.88548 1.61950 1.02792 1.51150 1.11199 1.21986 0.90675 0.95609 0.97646 1.21394 0.96378 0.99655 0.95279 1.18979 0.92719 0.94149 0.95410 1.21714 1.05870 1.33591 0.96679 0.92407 1.25985 0.97286 0.94863 1.01828 1.70094 1.15673 1.36365 1.35229 0.85406 0.78267 0.78058 0.79367 1.18698 1.20282 1.20347 1.22143 0.91563 0.95393 0.98518 1.21547 0.95869 1.00630 0.95437 1.46323 1.07051 1.05378 1.59462 0.71252 1.77241 0.87400 1.23762 1.27475 0.89642 0.90934 0.88576 0.81996 0.87585 0.91381 0.89738 0.90318 0.94260 0.95594 0.91363 0.93201 0.93145 0.99093 0.99008 0.92775 0.94344 0.91195 0.92021 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.45 71.24 0.74 -0.13 16 2 C 0.06 1.25 7.22 43.10 0.31 1.56 16 3 C -0.28 -5.17 10.65 21.99 0.23 -4.93 16 4 C 0.11 1.98 5.92 41.40 0.24 2.23 16 5 C -0.02 -0.32 2.64 -11.46 -0.03 -0.35 16 6 C -0.11 -1.73 5.18 30.64 0.16 -1.57 16 7 C 0.05 1.13 5.46 86.33 0.47 1.60 16 8 N -0.55 -14.68 4.66 -896.38 -4.17 -18.85 16 9 C 0.07 2.30 4.96 86.30 0.43 2.72 16 10 C -0.09 -3.69 5.08 30.59 0.16 -3.53 16 11 C 0.03 1.33 4.97 29.85 0.15 1.48 16 12 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 15 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 16 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 C 0.05 1.25 5.29 86.33 0.46 1.71 16 21 C -0.10 -1.85 5.36 30.65 0.16 -1.69 16 22 N -0.47 -9.38 7.14 -48.00 -0.34 -9.72 16 23 H 0.44 7.21 8.13 -213.33 -1.73 5.48 16 24 N -0.33 -7.81 12.70 -47.38 -0.60 -8.41 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.07 1.14 7.36 -2.39 -0.02 1.12 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.62 8.01 -2.39 -0.02 1.61 16 33 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.03 0.88 8.12 -2.38 -0.02 0.86 16 35 H 0.07 2.30 7.99 -2.39 -0.02 2.28 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.05 2.04 6.43 -2.39 -0.02 2.02 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.94 6.21 -2.39 -0.01 1.92 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -68.20 350.45 0.61 -67.60 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -0.77 Total: 11.03 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.18 Total: -31.48 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -4.83 Total: -93.79 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.20 0.61 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271666456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.874 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds