Wall clock time and date at job start Thu Apr 9 2020 13:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46904 * 109.47290 * 2 1 4 4 C 1.46902 * 111.00044 * 163.13984 * 3 2 1 5 5 C 1.50689 * 109.46949 * 293.95394 * 4 3 2 6 6 H 1.08003 * 120.00775 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00127 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99612 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00435 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46949 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.47017 * 240.00162 * 9 7 5 13 13 C 1.46902 * 110.99890 * 287.09310 * 3 2 1 14 14 C 1.52999 * 109.46703 * 85.70108 * 13 3 2 15 15 H 1.09000 * 109.47573 * 304.59955 * 14 13 3 16 16 C 1.52997 * 109.47427 * 64.60301 * 14 13 3 17 17 C 1.50703 * 109.46756 * 184.59886 * 14 13 3 18 18 C 1.38264 * 119.94670 * 299.72837 * 17 14 13 19 19 C 1.38150 * 120.05294 * 179.72577 * 18 17 14 20 20 C 1.38727 * 119.94515 * 0.54885 * 19 18 17 21 21 O 1.35906 * 120.05578 * 179.74977 * 20 19 18 22 22 C 1.42900 * 116.99745 * 359.97438 * 21 20 19 23 23 C 1.38733 * 119.89059 * 359.72401 * 20 19 18 24 24 C 1.38141 * 119.94270 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.47139 * 196.67313 * 1 2 3 26 26 H 1.09000 * 109.46966 * 316.67621 * 1 2 3 27 27 H 1.09003 * 109.47467 * 76.67546 * 1 2 3 28 28 H 1.09000 * 109.47126 * 239.99983 * 2 1 3 29 29 H 1.09000 * 109.47246 * 119.99907 * 2 1 3 30 30 H 1.09000 * 109.47181 * 53.95517 * 4 3 2 31 31 H 1.09000 * 109.46591 * 173.95179 * 4 3 2 32 32 H 0.97003 * 119.99537 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47043 * 205.70210 * 13 3 2 34 34 H 1.09004 * 109.47276 * 325.70687 * 13 3 2 35 35 H 1.09001 * 109.47087 * 299.99697 * 16 14 13 36 36 H 1.09000 * 109.47026 * 59.99319 * 16 14 13 37 37 H 1.08995 * 109.47614 * 179.97438 * 16 14 13 38 38 H 1.07994 * 119.97255 * 359.97438 * 18 17 14 39 39 H 1.08002 * 120.02215 * 180.27352 * 19 18 17 40 40 H 1.09005 * 109.46630 * 179.97438 * 22 21 20 41 41 H 1.08991 * 109.47027 * 299.99856 * 22 21 20 42 42 H 1.09005 * 109.46914 * 60.00349 * 22 21 20 43 43 H 1.08004 * 120.02936 * 179.97438 * 23 20 19 44 44 H 1.07998 * 119.97414 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4326 1.4438 0.3978 5 6 3.5676 1.0158 1.8363 6 1 2.6916 0.7284 2.3988 7 6 4.8096 0.9911 2.4345 8 7 5.8764 1.3416 1.7497 9 14 4.9770 0.4612 4.2180 10 1 3.6376 0.1199 4.7608 11 1 5.8617 -0.7287 4.2998 12 1 5.5650 1.5707 5.0109 13 6 1.8151 2.0157 -1.3109 14 6 0.4034 2.6016 -1.3801 15 1 -0.3251 1.8210 -1.1612 16 6 0.2678 3.7281 -0.3538 17 6 0.1538 3.1484 -2.7621 18 6 0.9555 4.1591 -3.2596 19 6 0.7322 4.6581 -4.5284 20 6 -0.3045 4.1521 -5.2989 21 8 -0.5294 4.6449 -6.5454 22 6 0.3403 5.6842 -6.9987 23 6 -1.1111 3.1419 -4.7952 24 6 -0.8804 2.6427 -3.5280 25 1 -0.3634 -0.9845 0.2949 26 1 -0.3633 0.7476 0.7051 27 1 -0.3634 0.2368 -1.0000 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0166 0.7767 -0.2362 31 1 3.7992 2.4643 0.2863 32 1 6.7502 1.3246 2.1707 33 1 2.5463 2.8122 -1.4489 34 1 1.9378 1.2697 -2.0961 35 1 0.4484 3.3327 0.6458 36 1 0.9964 4.5087 -0.5728 37 1 -0.7377 4.1458 -0.4034 38 1 1.7593 4.5560 -2.6575 39 1 1.3614 5.4445 -4.9182 40 1 0.0522 5.9855 -8.0059 41 1 0.2649 6.5396 -6.3276 42 1 1.3676 5.3197 -7.0088 43 1 -1.9191 2.7467 -5.3931 44 1 -1.5077 1.8561 -3.1356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271709590.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:02 Heat of formation + Delta-G solvation = -34.249817 kcal Electronic energy + Delta-G solvation = -21593.827294 eV Core-core repulsion = 18510.556864 eV Total energy + Delta-G solvation = -3083.270431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.15368 -39.55720 -38.15153 -35.21051 -34.20262 -32.01391 -31.63875 -30.09606 -28.86493 -27.93001 -26.38025 -24.25557 -24.08012 -23.19901 -21.63609 -20.78911 -19.08141 -18.45597 -17.41218 -16.84231 -16.61716 -16.30115 -16.22941 -15.70376 -15.46727 -14.94421 -14.74160 -14.44885 -14.28003 -14.12437 -13.94914 -13.62626 -13.39180 -13.26124 -12.89503 -12.76312 -12.69890 -12.56289 -12.39101 -12.22015 -12.02856 -12.00852 -11.74904 -11.66403 -11.54031 -11.10162 -10.96131 -10.61197 -9.91982 -9.06253 -8.90193 -8.19258 -6.28765 0.42464 0.48226 1.41166 1.41801 1.55462 2.40637 2.41224 2.81160 3.13179 3.32920 3.80969 3.96094 4.06338 4.07767 4.29783 4.33656 4.38770 4.41567 4.48755 4.53659 4.58718 4.60555 4.71846 4.76642 4.77530 4.83041 4.91960 5.04708 5.11364 5.13052 5.18611 5.20375 5.30113 5.37232 5.40821 5.44540 5.52994 5.60424 5.68253 5.82869 5.86322 6.08484 6.40885 6.47212 6.69751 6.88946 7.40904 8.92103 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.003515 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.627479 B = 7963.316954 C = 8503.329857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.053 3.947 3 N -0.533 5.533 4 C 0.209 3.791 5 C -0.517 4.517 6 H 0.065 0.935 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.068 3.932 14 C -0.042 4.042 15 H 0.100 0.900 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.209 4.209 20 C 0.107 3.893 21 O -0.335 6.335 22 C 0.019 3.981 23 C -0.158 4.158 24 C -0.079 4.079 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.015 0.985 29 H 0.058 0.942 30 H -0.045 1.045 31 H 0.001 0.999 32 H 0.263 0.737 33 H 0.046 0.954 34 H 0.023 0.977 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.121 0.879 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.143 0.857 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 5.613 -13.930 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 N -0.257 5.257 4 C 0.082 3.918 5 C -0.555 4.555 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.060 4.060 14 C -0.060 4.060 15 H 0.118 0.882 16 C -0.184 4.184 17 C -0.115 4.115 18 C -0.105 4.105 19 C -0.228 4.228 20 C 0.062 3.938 21 O -0.249 6.249 22 C -0.075 4.075 23 C -0.176 4.176 24 C -0.097 4.097 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.033 0.967 29 H 0.077 0.923 30 H -0.027 1.027 31 H 0.019 0.981 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.161 0.839 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.811 5.849 -13.710 21.013 hybrid contribution 1.703 -0.368 0.226 1.757 sum -13.108 5.481 -13.484 19.588 Atomic orbital electron populations 1.21919 0.93208 1.02146 1.02085 1.22091 0.97009 0.88914 0.99473 1.62059 1.19650 1.17375 1.26583 1.19385 0.83649 0.93991 0.94741 1.21492 0.93129 1.43741 0.97126 0.91720 1.25927 0.95436 0.95568 1.02900 1.70108 0.99156 1.49828 1.38657 0.85343 0.78450 0.77784 0.79100 1.18556 1.20564 1.20500 1.22153 0.97177 0.97328 0.89381 1.20303 0.96485 0.98383 0.90856 0.88172 1.21627 1.00749 0.97023 0.98956 1.19940 0.97155 0.97805 0.96624 1.20960 0.98666 0.95861 0.95008 1.21381 1.00644 1.04658 0.96083 1.19204 0.95045 0.94765 0.84818 1.86026 1.56515 1.53437 1.28885 1.23303 0.93944 0.88643 1.01648 1.20638 1.01869 0.98240 0.96887 1.21102 0.96688 0.99085 0.92790 0.91373 0.92021 0.91484 0.96692 0.92299 1.02699 0.98061 0.92799 0.93523 0.95827 0.92708 0.94085 0.92067 0.86269 0.84093 0.86130 0.91955 0.92286 0.83874 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.50 71.98 0.61 -3.28 16 2 C 0.05 2.05 5.51 86.30 0.48 2.53 16 3 N -0.53 -22.90 3.83 -900.80 -3.45 -26.36 16 4 C 0.21 11.31 4.65 85.55 0.40 11.71 16 5 C -0.52 -29.43 8.27 25.60 0.21 -29.21 16 6 H 0.06 3.61 7.27 -2.91 -0.02 3.59 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.94 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.07 2.49 4.18 86.30 0.36 2.86 16 14 C -0.04 -1.21 2.46 -11.54 -0.03 -1.24 16 15 H 0.10 2.67 4.10 -2.39 -0.01 2.66 16 16 C -0.13 -3.74 8.89 71.98 0.64 -3.10 16 17 C -0.11 -3.02 4.78 -19.85 -0.09 -3.11 16 18 C -0.09 -2.29 8.75 22.25 0.19 -2.10 16 19 C -0.21 -4.90 9.04 22.37 0.20 -4.70 16 20 C 0.11 2.51 6.69 22.51 0.15 2.66 16 21 O -0.33 -7.12 10.50 -92.50 -0.97 -8.10 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C -0.16 -3.52 9.99 22.37 0.22 -3.30 16 24 C -0.08 -1.79 9.66 22.26 0.22 -1.57 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 27 H 0.07 1.66 6.17 -2.39 -0.01 1.64 16 28 H 0.01 0.57 7.72 -2.39 -0.02 0.56 16 29 H 0.06 2.54 6.58 -2.39 -0.02 2.53 16 30 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 31 H 0.00 0.08 7.79 -2.39 -0.02 0.06 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.05 1.83 6.99 -2.39 -0.02 1.82 16 34 H 0.02 0.87 7.58 -2.38 -0.02 0.85 16 35 H 0.05 1.86 7.74 -2.39 -0.02 1.84 16 36 H 0.04 1.24 7.37 -2.39 -0.02 1.22 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 38 H 0.12 3.21 7.15 -2.91 -0.02 3.19 16 39 H 0.14 2.68 6.30 -2.91 -0.02 2.66 16 40 H 0.12 1.01 8.14 -2.38 -0.02 1.00 16 41 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 42 H 0.06 0.75 7.66 -2.38 -0.02 0.73 16 43 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 44 H 0.15 2.65 7.94 -2.91 -0.02 2.63 16 Total: -1.00 -66.35 348.09 3.98 -62.36 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.96 Total: 12.33 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 5.13 Total: -30.07 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.17 Total: -83.13 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.97 Total: -8.10 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -66.35 3.98 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271709590.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.111 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds