Wall clock time and date at job start Thu Apr 9 2020 13:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47357 * 2 1 4 4 C 1.36938 * 119.99641 * 275.30842 * 3 2 1 5 5 H 1.07995 * 120.00312 * 37.57806 * 4 3 2 6 6 C 1.38812 * 119.99887 * 217.57553 * 4 3 2 7 7 N 1.31616 * 120.00274 * 21.43450 * 6 4 3 8 8 Si 1.86799 * 120.00112 * 201.43216 * 6 4 3 9 9 H 1.48505 * 109.46983 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47065 * 120.00160 * 8 6 4 11 11 H 1.48493 * 109.47612 * 240.00287 * 8 6 4 12 12 C 1.46497 * 120.00206 * 95.31240 * 3 2 1 13 13 C 1.53001 * 109.46917 * 269.99665 * 12 3 2 14 14 C 1.52998 * 109.47302 * 179.97438 * 13 12 3 15 15 C 1.53001 * 109.47302 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47302 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47495 * 180.02562 * 16 15 14 18 18 C 1.35902 * 117.00379 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05731 * 179.97438 * 18 17 16 20 20 C 1.38143 * 119.94192 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.05727 * 0.02562 * 20 19 18 22 22 C 1.38262 * 120.11003 * 359.96012 * 21 20 19 23 23 C 1.38143 * 120.06008 * 0.03845 * 22 21 20 24 24 H 1.09004 * 109.47347 * 59.99825 * 1 2 3 25 25 H 1.08996 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46758 * 300.00279 * 1 2 3 27 27 H 1.08998 * 109.47167 * 239.99602 * 2 1 3 28 28 H 1.09004 * 109.46875 * 119.99931 * 2 1 3 29 29 H 0.96995 * 120.00513 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47251 * 150.00145 * 12 3 2 31 31 H 1.08993 * 109.47570 * 29.99529 * 12 3 2 32 32 H 1.09002 * 109.47206 * 60.00257 * 13 12 3 33 33 H 1.09002 * 109.47402 * 300.00043 * 13 12 3 34 34 H 1.09002 * 109.46714 * 60.00037 * 14 13 12 35 35 H 1.09002 * 109.46993 * 300.00374 * 14 13 12 36 36 H 1.08997 * 109.46769 * 60.00264 * 15 14 13 37 37 H 1.09002 * 109.47402 * 300.00124 * 15 14 13 38 38 H 1.09006 * 109.47158 * 59.99841 * 16 15 14 39 39 H 1.09002 * 109.46993 * 300.00374 * 16 15 14 40 40 H 1.08007 * 120.02503 * 359.70661 * 19 18 17 41 41 H 1.08002 * 119.96670 * 180.02562 * 20 19 18 42 42 H 1.07996 * 119.93832 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.97170 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.03261 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6492 8 14 3.0994 4.2794 -2.6585 9 1 1.7772 4.2140 -3.3314 10 1 3.2552 5.6021 -2.0017 11 1 4.1766 4.0962 -3.6640 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5131 3.4182 3.1561 15 6 0.2824 4.1233 3.7296 16 6 0.6530 4.8038 5.0489 17 8 -0.4966 5.4618 5.5849 18 6 -0.3375 6.1195 6.7635 19 6 -1.4119 6.7808 7.3407 20 6 -1.2477 7.4481 8.5391 21 6 -0.0138 7.4579 9.1629 22 6 1.0583 6.7994 8.5898 23 6 0.8994 6.1305 7.3916 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0492 3.4025 -0.7836 30 1 3.1617 2.7640 1.0859 31 1 2.7255 1.2834 1.9721 32 1 0.3542 2.0070 2.0139 33 1 0.7904 3.4877 1.1276 34 1 2.3018 4.1495 2.9791 35 1 1.8652 2.6685 3.8647 36 1 -0.5059 3.3917 3.9067 37 1 -0.0700 4.8730 3.0211 38 1 1.4413 5.5355 4.8715 39 1 1.0057 4.0544 5.7576 40 1 -2.3747 6.7774 6.8514 41 1 -2.0839 7.9627 8.9890 42 1 0.1125 7.9805 10.0995 43 1 2.0211 6.8081 9.0793 44 1 1.7373 5.6166 6.9442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275682127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:24 Heat of formation + Delta-G solvation = -17.137654 kcal Electronic energy + Delta-G solvation = -20701.093717 eV Core-core repulsion = 17618.565326 eV Total energy + Delta-G solvation = -3082.528392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.21030 -37.68370 -36.42641 -34.48274 -31.81343 -31.31022 -30.70412 -29.61004 -28.26068 -25.55839 -23.95390 -22.90536 -22.27475 -21.21018 -20.47754 -19.99212 -18.30611 -16.56625 -16.33342 -16.24529 -15.85451 -15.04186 -14.62700 -14.51279 -13.84065 -13.73906 -13.70472 -13.54994 -12.97742 -12.67183 -12.44975 -12.13818 -11.93876 -11.79072 -11.76091 -11.29029 -11.13632 -10.98788 -10.86200 -10.78266 -10.69922 -10.40194 -10.34910 -10.24686 -9.92296 -9.56255 -9.40169 -9.21795 -8.43136 -8.36539 -6.50329 -5.73876 -3.32637 1.12725 1.25993 3.09921 3.36391 3.45281 3.48391 3.59578 4.50716 4.61610 4.68465 4.90902 4.93289 4.97476 5.16647 5.19232 5.29479 5.34325 5.40813 5.54441 5.56052 5.68405 5.79881 5.92984 6.03938 6.13005 6.14806 6.21076 6.25438 6.31546 6.37518 6.42016 6.50479 6.58029 6.60706 6.64765 6.83404 6.89220 6.97824 7.19791 7.29514 7.32173 7.76187 7.86916 8.57402 9.25258 9.87893 10.46915 11.25033 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.002906 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.831160 B = 9632.051901 C =10245.337300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.587 5.587 4 C -0.255 4.255 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.147 3.853 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.059 3.941 17 O -0.316 6.316 18 C 0.135 3.865 19 C -0.157 4.157 20 C -0.083 4.083 21 C -0.165 4.165 22 C -0.080 4.080 23 C -0.211 4.211 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.032 0.968 29 H 0.253 0.747 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 6.212 17.585 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.308 5.308 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.021 3.979 13 C -0.173 4.173 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.016 4.016 17 O -0.229 6.229 18 C 0.089 3.911 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.184 4.184 22 C -0.099 4.099 23 C -0.230 4.230 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.758 6.245 17.425 20.070 hybrid contribution 0.205 0.764 -0.547 0.962 sum -7.553 7.009 16.878 19.774 Atomic orbital electron populations 1.22376 1.00196 0.98805 1.01204 1.20827 0.91686 0.87490 0.98549 1.43794 1.76081 1.08236 1.02689 1.19024 1.04435 1.20869 0.94132 0.92403 1.25168 0.94253 1.01404 0.98109 1.70015 1.03216 1.37358 1.42548 0.86375 0.77651 0.82369 0.81303 1.20098 1.21459 1.21693 1.20912 0.95079 0.96421 0.85487 1.22227 1.01220 0.99534 0.94307 1.21477 0.96128 0.99258 0.98168 1.21615 0.99962 0.99903 0.93862 1.23012 0.86868 0.95624 0.96087 1.86088 1.37988 1.64782 1.34074 1.19111 0.93842 0.92336 0.85804 1.20485 0.98241 1.01581 0.97280 1.20959 0.97479 0.97469 0.94157 1.21043 0.93346 1.02822 1.01166 1.20968 0.98853 0.95539 0.94496 1.21353 0.97077 1.05915 0.98608 0.93296 0.94704 0.93713 0.94031 0.94955 0.93723 0.89043 0.96180 0.93656 0.92321 0.91916 0.92453 0.91177 0.90963 0.91941 0.92065 0.85266 0.85523 0.86077 0.85869 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.21 37.16 0.38 -2.72 16 2 C 0.14 3.04 6.44 -4.04 -0.03 3.02 16 3 N -0.59 -14.70 2.43 -173.25 -0.42 -15.12 16 4 C -0.25 -6.98 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 6 C 0.01 0.29 4.95 -17.43 -0.09 0.21 16 7 N -0.89 -25.54 11.47 55.49 0.64 -24.90 16 8 Si 0.89 21.59 29.60 -169.99 -5.03 16.56 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 C 0.15 3.40 5.33 -4.04 -0.02 3.38 16 13 C -0.13 -2.56 5.54 -26.73 -0.15 -2.71 16 14 C -0.11 -1.73 5.21 -26.73 -0.14 -1.87 16 15 C -0.12 -1.58 5.58 -26.73 -0.15 -1.73 16 16 C 0.06 0.72 4.74 37.16 0.18 0.90 16 17 O -0.32 -4.28 10.14 -19.43 -0.20 -4.48 16 18 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 19 C -0.16 -1.71 9.99 -39.43 -0.39 -2.11 16 20 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 21 C -0.17 -1.46 10.04 -39.56 -0.40 -1.86 16 22 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 23 C -0.21 -2.33 9.04 -39.43 -0.36 -2.68 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 27 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 28 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.09 2.39 5.52 -51.93 -0.29 2.11 16 31 H 0.02 0.44 7.86 -51.93 -0.41 0.03 16 32 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -29.69 357.92 -9.52 -39.21 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.54 Total: -0.46 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.36 Total: -16.20 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.21 Total: -40.02 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.69 -9.52 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275682127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.074 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds