Wall clock time and date at job start Thu Apr 9 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47357 * 2 1 4 4 C 1.36938 * 119.99641 * 275.30842 * 3 2 1 5 5 H 1.07995 * 120.00312 * 37.57806 * 4 3 2 6 6 C 1.38812 * 119.99887 * 217.57553 * 4 3 2 7 7 N 1.31616 * 120.00274 * 21.43450 * 6 4 3 8 8 Si 1.86799 * 120.00112 * 201.43216 * 6 4 3 9 9 H 1.48505 * 109.46983 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47065 * 120.00160 * 8 6 4 11 11 H 1.48493 * 109.47612 * 240.00287 * 8 6 4 12 12 C 1.46497 * 120.00206 * 95.31240 * 3 2 1 13 13 C 1.53001 * 109.46917 * 269.99665 * 12 3 2 14 14 C 1.52998 * 109.47302 * 179.97438 * 13 12 3 15 15 C 1.53001 * 109.47302 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47302 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47495 * 180.02562 * 16 15 14 18 18 C 1.35902 * 117.00379 * 179.97438 * 17 16 15 19 19 C 1.38733 * 120.05731 * 179.97438 * 18 17 16 20 20 C 1.38143 * 119.94192 * 179.97438 * 19 18 17 21 21 C 1.38265 * 120.05727 * 0.02562 * 20 19 18 22 22 C 1.38262 * 120.11003 * 359.96012 * 21 20 19 23 23 C 1.38143 * 120.06008 * 0.03845 * 22 21 20 24 24 H 1.09004 * 109.47347 * 59.99825 * 1 2 3 25 25 H 1.08996 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46758 * 300.00279 * 1 2 3 27 27 H 1.08998 * 109.47167 * 239.99602 * 2 1 3 28 28 H 1.09004 * 109.46875 * 119.99931 * 2 1 3 29 29 H 0.96995 * 120.00513 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47251 * 150.00145 * 12 3 2 31 31 H 1.08993 * 109.47570 * 29.99529 * 12 3 2 32 32 H 1.09002 * 109.47206 * 60.00257 * 13 12 3 33 33 H 1.09002 * 109.47402 * 300.00043 * 13 12 3 34 34 H 1.09002 * 109.46714 * 60.00037 * 14 13 12 35 35 H 1.09002 * 109.46993 * 300.00374 * 14 13 12 36 36 H 1.08997 * 109.46769 * 60.00264 * 15 14 13 37 37 H 1.09002 * 109.47402 * 300.00124 * 15 14 13 38 38 H 1.09006 * 109.47158 * 59.99841 * 16 15 14 39 39 H 1.09002 * 109.46993 * 300.00374 * 16 15 14 40 40 H 1.08007 * 120.02503 * 359.70661 * 19 18 17 41 41 H 1.08002 * 119.96670 * 180.02562 * 20 19 18 42 42 H 1.07996 * 119.93832 * 179.97438 * 21 20 19 43 43 H 1.08004 * 119.97170 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.03261 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0632 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2112 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6492 8 14 3.0994 4.2794 -2.6585 9 1 1.7772 4.2140 -3.3314 10 1 3.2552 5.6021 -2.0017 11 1 4.1766 4.0962 -3.6640 12 6 2.3733 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5131 3.4182 3.1561 15 6 0.2824 4.1233 3.7296 16 6 0.6530 4.8038 5.0489 17 8 -0.4966 5.4618 5.5849 18 6 -0.3375 6.1195 6.7635 19 6 -1.4119 6.7808 7.3407 20 6 -1.2477 7.4481 8.5391 21 6 -0.0138 7.4579 9.1629 22 6 1.0583 6.7994 8.5898 23 6 0.8994 6.1305 7.3916 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.0492 3.4025 -0.7836 30 1 3.1617 2.7640 1.0859 31 1 2.7255 1.2834 1.9721 32 1 0.3542 2.0070 2.0139 33 1 0.7904 3.4877 1.1276 34 1 2.3018 4.1495 2.9791 35 1 1.8652 2.6685 3.8647 36 1 -0.5059 3.3917 3.9067 37 1 -0.0700 4.8730 3.0211 38 1 1.4413 5.5355 4.8715 39 1 1.0057 4.0544 5.7576 40 1 -2.3747 6.7774 6.8514 41 1 -2.0839 7.9627 8.9890 42 1 0.1125 7.9805 10.0995 43 1 2.0211 6.8081 9.0793 44 1 1.7373 5.6166 6.9442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275682127.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:57:23 Heat of formation + Delta-G solvation = -30.816254 kcal Electronic energy + Delta-G solvation = -20701.686866 eV Core-core repulsion = 17618.565326 eV Total energy + Delta-G solvation = -3083.121540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04818 -38.59241 -38.11466 -35.86543 -33.80151 -32.27824 -31.77076 -30.68829 -29.83299 -27.12403 -25.58655 -23.89135 -23.23138 -22.37527 -21.83347 -21.78038 -19.16073 -18.53445 -17.39369 -17.03139 -16.90974 -16.66861 -16.05074 -15.65390 -15.37430 -15.30086 -14.74514 -14.34226 -14.26063 -14.15393 -13.92166 -13.51852 -13.24521 -13.10091 -12.89455 -12.86011 -12.62379 -12.47092 -12.35017 -12.16407 -12.04338 -11.89433 -11.75915 -11.66274 -11.52576 -11.34421 -11.13064 -10.49011 -9.95620 -9.17405 -8.52731 -7.79707 -5.43787 0.38970 0.49201 1.43073 1.46684 1.56566 2.19160 2.50882 2.84855 3.23736 3.68511 3.85374 3.90165 3.96536 4.06799 4.20645 4.26459 4.29359 4.34513 4.44955 4.50307 4.56324 4.66546 4.72179 4.73734 4.78100 4.85567 4.99215 5.00977 5.08598 5.09018 5.12739 5.26218 5.31043 5.36965 5.40242 5.48636 5.58598 5.59909 5.60267 5.70961 5.88094 5.90697 6.45638 6.49642 7.20529 7.91060 8.43058 9.14521 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.002906 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.831160 B = 9632.051901 C =10245.337300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.606 5.606 4 C -0.263 4.263 5 H 0.050 0.950 6 C -0.036 4.036 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.148 3.852 13 C -0.118 4.118 14 C -0.102 4.102 15 C -0.107 4.107 16 C 0.063 3.937 17 O -0.334 6.334 18 C 0.105 3.895 19 C -0.173 4.173 20 C -0.083 4.083 21 C -0.165 4.165 22 C -0.087 4.087 23 C -0.224 4.224 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.046 0.954 29 H 0.251 0.749 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.670 6.724 19.331 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.328 5.328 4 C -0.394 4.394 5 H 0.068 0.932 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.022 3.978 13 C -0.158 4.158 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.011 4.011 17 O -0.249 6.249 18 C 0.060 3.940 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.183 4.183 22 C -0.105 4.105 23 C -0.243 4.243 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.150 0.850 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.680 6.746 19.182 22.108 hybrid contribution 0.477 0.564 -1.018 1.258 sum -8.203 7.310 18.163 21.228 Atomic orbital electron populations 1.22181 0.97573 1.00723 1.00631 1.20974 0.93648 0.85867 0.98579 1.44074 1.76491 1.09631 1.02602 1.19188 1.04014 1.21297 0.94853 0.93200 1.25821 0.94017 1.03292 1.00228 1.70129 1.03741 1.38123 1.44170 0.85444 0.77635 0.79690 0.79102 1.19463 1.21425 1.21659 1.20867 0.95809 0.95965 0.85186 1.21974 0.99489 0.98902 0.95397 1.21338 0.96756 0.99377 0.96602 1.21447 0.98969 0.99660 0.94419 1.22902 0.86739 0.95956 0.95527 1.86027 1.38396 1.65445 1.35028 1.19415 0.95040 0.93614 0.85918 1.20742 0.98206 1.02025 0.98208 1.21327 0.98658 0.96745 0.93348 1.21450 0.92885 1.02026 1.01904 1.21317 1.00230 0.94973 0.93993 1.21529 0.96796 1.06541 0.99394 0.94770 0.91504 0.93306 0.95317 0.93601 0.93963 0.92228 0.95562 0.92728 0.94692 0.92634 0.90822 0.90763 0.91991 0.91672 0.90802 0.84966 0.82823 0.83339 0.83690 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 10.21 71.98 0.73 -4.67 16 2 C 0.13 5.74 6.44 86.38 0.56 6.30 16 3 N -0.61 -30.55 2.43 -702.03 -1.71 -32.26 16 4 C -0.26 -14.62 9.45 84.03 0.79 -13.82 16 5 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 6 C -0.04 -2.04 4.95 84.86 0.42 -1.62 16 7 N -0.92 -53.76 11.47 21.65 0.25 -53.51 16 8 Si 0.95 45.01 29.60 68.60 2.03 47.04 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 C 0.15 6.87 5.33 86.38 0.46 7.33 16 13 C -0.12 -4.52 5.54 30.59 0.17 -4.35 16 14 C -0.10 -3.11 5.21 30.59 0.16 -2.95 16 15 C -0.11 -2.86 5.58 30.59 0.17 -2.69 16 16 C 0.06 1.52 4.74 71.98 0.34 1.86 16 17 O -0.33 -9.02 10.14 -92.44 -0.94 -9.95 16 18 C 0.11 2.56 6.69 22.51 0.15 2.71 16 19 C -0.17 -3.63 9.99 22.37 0.22 -3.40 16 20 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 21 C -0.16 -2.46 10.04 22.28 0.22 -2.24 16 22 C -0.09 -1.48 10.04 22.25 0.22 -1.25 16 23 C -0.22 -4.73 9.04 22.37 0.20 -4.52 16 24 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.69 6.64 -2.39 -0.02 1.67 16 27 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.05 1.80 7.83 -2.38 -0.02 1.78 16 29 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.06 3.20 5.52 -2.39 -0.01 3.19 16 31 H 0.03 1.15 7.86 -2.39 -0.02 1.13 16 32 H 0.05 1.97 6.64 -2.39 -0.02 1.96 16 33 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.07 1.50 7.67 -2.38 -0.02 1.48 16 39 H 0.07 1.56 7.66 -2.39 -0.02 1.54 16 40 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.13 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -64.22 357.92 5.63 -58.59 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.94 Total: 14.51 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.05 Total: -24.42 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.46 Total: -85.77 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.94 Total: -9.95 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.22 5.63 -58.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275682127.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.778 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds