Wall clock time and date at job start Thu Apr 9 2020 13:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99790 * 2 1 4 4 C 1.53000 * 109.47064 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47324 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47513 * 180.02562 * 5 4 3 7 7 N 1.46890 * 109.47458 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00112 * 293.95796 * 7 6 5 9 9 C 1.46900 * 111.00554 * 169.99724 * 7 6 5 10 10 C 1.50691 * 109.47701 * 189.99955 * 9 7 6 11 11 C 1.38627 * 119.75187 * 269.73075 * 10 9 7 12 12 C 1.37624 * 120.24982 * 179.71919 * 11 10 9 13 13 C 1.40720 * 119.74273 * 0.57129 * 12 11 10 14 14 C 1.41392 * 120.24103 * 179.68109 * 13 12 11 15 15 H 1.08007 * 119.99493 * 204.40369 * 14 13 12 16 16 C 1.39937 * 120.00225 * 24.40665 * 14 13 12 17 17 N 1.30819 * 120.00256 * 17.84763 * 16 14 13 18 18 Si 1.86802 * 119.99957 * 197.84471 * 16 14 13 19 19 H 1.48506 * 109.47048 * 90.00416 * 18 16 14 20 20 H 1.48504 * 109.47110 * 210.00096 * 18 16 14 21 21 H 1.48498 * 109.47523 * 330.00278 * 18 16 14 22 22 C 1.40714 * 119.50768 * 359.70397 * 13 12 11 23 23 C 1.37617 * 119.75153 * 359.97438 * 22 13 12 24 24 H 1.08998 * 109.46513 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47194 * 299.99654 * 1 2 3 26 26 H 1.09003 * 109.46901 * 59.99629 * 1 2 3 27 27 H 1.09001 * 109.46622 * 60.00339 * 3 2 1 28 28 H 1.08995 * 109.47524 * 299.99804 * 3 2 1 29 29 H 1.08998 * 109.47059 * 60.00348 * 4 3 2 30 30 H 1.08995 * 109.47470 * 300.00788 * 4 3 2 31 31 H 1.08998 * 109.46888 * 60.00097 * 5 4 3 32 32 H 1.09005 * 109.47398 * 300.00679 * 5 4 3 33 33 H 1.09001 * 109.46817 * 59.99692 * 6 5 4 34 34 H 1.09005 * 109.46678 * 300.00187 * 6 5 4 35 35 H 1.08994 * 109.46992 * 59.99492 * 8 7 6 36 36 H 1.09001 * 109.47157 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.46440 * 299.99470 * 8 7 6 38 38 H 1.09002 * 109.47258 * 310.00563 * 9 7 6 39 39 H 1.09006 * 109.46799 * 69.99445 * 9 7 6 40 40 H 1.07999 * 119.87655 * 359.97438 * 11 10 9 41 41 H 1.08001 * 120.12675 * 180.27783 * 12 11 10 42 42 H 0.97007 * 120.00612 * 179.97438 * 17 16 14 43 43 H 1.08005 * 120.12182 * 179.97438 * 22 13 12 44 44 H 1.07992 * 119.87642 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1578 2.5825 0.0013 6 6 5.6830 2.4618 0.0013 7 7 6.2804 3.8037 0.0025 8 6 5.9859 4.5123 -1.2502 9 6 7.7283 3.7352 0.2408 10 6 8.2645 5.1232 0.4793 11 6 8.7146 5.8802 -0.5912 12 6 9.2009 7.1512 -0.3857 13 6 9.2514 7.6770 0.9186 14 6 9.7552 8.9789 1.1425 15 1 10.1614 9.2420 2.1081 16 6 9.7277 9.9265 0.1132 17 7 8.9441 9.7484 -0.9192 18 14 10.8096 11.4460 0.2132 19 1 12.1223 11.1616 -0.4204 20 1 10.1502 12.5709 -0.4976 21 1 11.0165 11.8136 1.6371 22 6 8.7971 6.8972 1.9982 23 6 8.3086 5.6313 1.7685 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6887 1.8465 -0.8899 29 1 3.8574 0.6438 -0.8891 30 1 3.8568 0.6439 0.8907 31 1 3.8357 3.1231 0.8913 32 1 3.8364 3.1237 -0.8887 33 1 6.0046 1.9212 -0.8889 34 1 6.0045 1.9204 0.8911 35 1 4.9067 4.6102 -1.3670 36 1 6.4403 5.5027 -1.2228 37 1 6.3928 3.9493 -2.0902 38 1 7.9237 3.1149 1.1155 39 1 8.2196 3.3005 -0.6298 40 1 8.6796 5.4727 -1.5907 41 1 9.5468 7.7409 -1.2218 42 1 8.9247 10.4054 -1.6326 43 1 8.8317 7.2908 3.0034 44 1 7.9591 5.0313 2.5956 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399182624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:05 Heat of formation + Delta-G solvation = -56.652900 kcal Electronic energy + Delta-G solvation = -20644.404528 eV Core-core repulsion = 17560.162627 eV Total energy + Delta-G solvation = -3084.241901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.88983 -39.00922 -38.18724 -35.73566 -34.68082 -32.11912 -31.16773 -29.60775 -28.69068 -27.41872 -26.42508 -24.55069 -22.88951 -22.63374 -21.66041 -21.35905 -19.19615 -17.29218 -17.27144 -17.17281 -16.60596 -16.38415 -16.20395 -15.75602 -15.62346 -15.44353 -14.84936 -14.67113 -14.12050 -13.80376 -13.66866 -13.41656 -13.18975 -13.04565 -12.84205 -12.69974 -12.60826 -12.46644 -12.38589 -12.28574 -12.07861 -11.93846 -11.80302 -11.44242 -11.30492 -11.20431 -10.98882 -10.61663 -9.35868 -9.22591 -9.05961 -8.61606 -6.30880 0.96422 1.18843 1.37864 1.51047 1.51950 2.21372 2.65145 2.81146 3.29232 3.81999 3.95576 4.03191 4.19211 4.29033 4.32180 4.39044 4.45248 4.52846 4.54759 4.55483 4.56517 4.67167 4.73171 4.75414 4.79237 4.85307 4.85969 4.93018 4.99701 5.07162 5.16563 5.18739 5.32958 5.40390 5.41415 5.50880 5.73939 5.99247 6.12852 6.14361 6.23396 6.30276 6.37310 6.42875 6.73399 6.96996 7.07290 8.34968 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.002593 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.769440 B =10797.767088 C =11006.033249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.060 3.940 4 C -0.109 4.109 5 C -0.105 4.105 6 C 0.057 3.943 7 N -0.549 5.549 8 C 0.027 3.973 9 C 0.124 3.876 10 C -0.193 4.193 11 C -0.094 4.094 12 C -0.191 4.191 13 C 0.078 3.922 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.034 3.966 17 N -0.826 5.826 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.245 4.245 23 C -0.073 4.073 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.287 0.713 43 H 0.094 0.906 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.271 -13.745 -1.221 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.017 4.017 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.071 4.071 7 N -0.273 5.273 8 C -0.121 4.121 9 C -0.003 4.003 10 C -0.195 4.195 11 C -0.113 4.113 12 C -0.210 4.210 13 C 0.075 3.925 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.181 4.181 17 N -0.452 5.452 18 Si 0.803 3.197 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.183 1.183 22 C -0.264 4.264 23 C -0.092 4.092 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.467 -13.551 -1.051 17.783 hybrid contribution 0.593 0.816 -0.738 1.250 sum -10.874 -12.735 -1.789 16.841 Atomic orbital electron populations 1.22917 0.79640 1.03781 1.00776 1.87822 1.21415 1.29043 1.95613 1.22602 0.94091 0.84184 1.00804 1.21386 0.93001 0.97119 1.03215 1.21403 0.93926 0.96223 1.02726 1.22143 0.94943 0.88856 1.01114 1.62001 1.12067 1.18114 1.35151 1.22364 1.01591 0.98669 0.89467 1.20687 0.86474 0.93197 0.99904 1.19282 1.09745 0.97621 0.92829 1.20721 0.99188 0.94184 0.97159 1.21245 1.07025 0.95404 0.97356 1.17968 0.89163 0.93118 0.92205 1.19822 1.37791 0.96468 0.99115 0.90909 1.26750 0.94732 1.02862 0.93722 1.69885 1.30202 1.36311 1.08811 0.85208 0.78568 0.76254 0.79676 1.18725 1.19228 1.18292 1.21168 1.10182 0.97368 0.97729 1.20640 0.97759 0.94620 0.96186 0.88502 0.93317 0.93314 0.92742 0.92739 0.91315 0.91106 0.91500 0.91738 0.94657 0.90291 0.90584 0.93216 0.95572 0.90105 0.95087 0.88265 0.88390 0.90255 0.88825 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.31 10.70 -148.98 -1.59 -9.90 16 3 C 0.06 1.04 5.94 71.98 0.43 1.46 16 4 C -0.11 -1.94 5.58 30.59 0.17 -1.77 16 5 C -0.10 -2.11 5.14 30.59 0.16 -1.95 16 6 C 0.06 1.33 4.96 86.30 0.43 1.75 16 7 N -0.55 -16.85 4.75 -927.07 -4.41 -21.26 16 8 C 0.03 0.84 8.98 127.69 1.15 1.99 16 9 C 0.12 4.12 5.11 85.55 0.44 4.56 16 10 C -0.19 -8.17 4.91 -19.68 -0.10 -8.26 16 11 C -0.09 -4.35 7.87 22.22 0.17 -4.17 16 12 C -0.19 -10.25 8.70 22.73 0.20 -10.05 16 13 C 0.08 4.32 5.57 -21.29 -0.12 4.21 16 14 C -0.50 -27.91 9.05 23.46 0.21 -27.70 16 15 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 16 C 0.03 1.75 5.14 85.26 0.44 2.19 16 17 N -0.83 -44.17 10.95 21.82 0.24 -43.93 16 18 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 19 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.24 -12.40 9.80 22.73 0.22 -12.18 16 23 C -0.07 -3.27 9.67 22.22 0.21 -3.06 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.30 6.55 -2.38 -0.02 1.28 16 33 H 0.04 0.78 8.12 -2.39 -0.02 0.77 16 34 H 0.08 1.72 7.93 -2.38 -0.02 1.71 16 35 H 0.08 2.05 6.47 -2.39 -0.02 2.04 16 36 H 0.05 1.88 5.90 -2.39 -0.01 1.86 16 37 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 2.42 7.87 -2.39 -0.02 2.41 16 39 H 0.03 0.99 8.06 -2.38 -0.02 0.97 16 40 H 0.10 4.17 7.99 -2.91 -0.02 4.15 16 41 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 42 H 0.29 13.84 8.30 -92.70 -0.77 13.07 16 43 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -61.17 355.40 2.47 -58.70 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.94 Total: 26.71 kcal Atomic # 6 Polarization: -56.68 SS G_CDS: 5.26 Total: -51.42 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -4.17 Total: -65.19 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.59 Total: -9.90 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -61.17 2.47 -58.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399182624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.042 kcal (2) G-P(sol) polarization free energy of solvation -61.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds