Wall clock time and date at job start Thu Apr 9 2020 13:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39869 * 125.90288 * 2 1 4 4 C 1.35312 * 107.91889 * 180.26703 * 3 2 1 5 5 C 1.50703 * 126.12327 * 179.76047 * 4 3 2 6 6 N 1.46900 * 109.47317 * 95.02718 * 5 4 3 7 7 C 1.46847 * 110.99375 * 294.20985 * 6 5 4 8 8 C 1.53042 * 109.52360 * 174.16248 * 7 6 5 9 9 C 1.53117 * 109.27644 * 59.17160 * 8 7 6 10 10 C 1.53003 * 109.52198 * 182.44170 * 9 8 7 11 11 C 1.50698 * 109.47571 * 294.68810 * 10 9 8 12 12 H 1.08005 * 119.99528 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00553 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99539 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47347 * 60.00437 * 15 13 11 17 17 H 1.48501 * 109.46718 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47082 * 299.99749 * 15 13 11 19 19 C 1.53120 * 109.16670 * 302.34989 * 9 8 7 20 20 C 1.46845 * 111.00074 * 169.99919 * 6 5 4 21 21 N 1.34951 * 107.74772 * 359.61173 * 4 3 2 22 22 C 1.46501 * 126.03602 * 180.15058 * 21 4 3 23 23 N 1.30837 * 125.89523 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47632 * 89.99340 * 1 2 3 25 25 H 1.09001 * 109.47080 * 210.00292 * 1 2 3 26 26 H 1.09003 * 109.46734 * 329.99771 * 1 2 3 27 27 H 1.08002 * 126.03560 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.46992 * 215.02578 * 5 4 3 29 29 H 1.08994 * 109.47530 * 335.02037 * 5 4 3 30 30 H 1.09006 * 109.46188 * 294.17124 * 7 6 5 31 31 H 1.08993 * 109.46752 * 54.14505 * 7 6 5 32 32 H 1.09002 * 109.49936 * 299.23665 * 8 7 6 33 33 H 1.08995 * 109.54132 * 179.13675 * 8 7 6 34 34 H 1.09001 * 109.57633 * 62.29130 * 9 8 7 35 35 H 1.09000 * 109.46720 * 54.68610 * 10 9 8 36 36 H 1.09003 * 109.47511 * 174.68611 * 10 9 8 37 37 H 0.97002 * 119.99602 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.49884 * 297.71277 * 19 9 8 39 39 H 1.08996 * 109.53725 * 177.61656 * 19 9 8 40 40 H 1.08998 * 109.46291 * 305.84848 * 20 6 5 41 41 H 1.09003 * 109.46465 * 65.83264 * 20 6 5 42 42 H 1.09000 * 109.47158 * 270.30686 * 22 21 4 43 43 H 1.09007 * 109.47094 * 30.30534 * 22 21 4 44 44 H 1.08997 * 109.47044 * 150.30647 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7152 -0.0060 5 6 4.8350 1.5987 -0.0133 6 7 5.3099 1.7892 1.3637 7 6 4.3314 2.5428 2.1581 8 6 4.7898 2.5964 3.6173 9 6 6.1629 3.2700 3.6914 10 6 6.6539 3.2719 5.1405 11 6 5.7475 4.1379 5.9769 12 1 4.9056 4.6373 5.5204 13 6 5.9928 4.2927 7.3248 14 7 7.0182 3.6850 7.8805 15 14 4.8688 5.3656 8.3616 16 1 3.4851 4.8294 8.3082 17 1 5.3455 5.3676 9.7680 18 1 4.8828 6.7532 7.8328 19 6 7.1515 2.4935 2.8173 20 6 6.6247 2.4430 1.3813 21 7 3.6087 -0.6343 -0.0010 22 6 4.7898 -1.5010 -0.0016 23 7 2.2741 -1.0599 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.9924 2.1598 -0.0004 28 1 5.6198 1.1292 -0.6065 29 1 4.5811 2.5658 -0.4471 30 1 4.2488 3.5566 1.7660 31 1 3.3605 2.0510 2.1003 32 1 4.8594 1.5836 4.0143 33 1 4.0716 3.1688 4.2043 34 1 6.0863 4.2960 3.3315 35 1 6.6434 2.2536 5.5290 36 1 7.6697 3.6653 5.1795 37 1 7.1906 3.7936 8.8289 38 1 7.2583 1.4791 3.2017 39 1 8.1207 2.9920 2.8320 40 1 7.3193 1.8784 0.7593 41 1 6.5313 3.4572 0.9930 42 1 5.0827 -1.7154 -1.0294 43 1 5.6093 -0.9987 0.5125 44 1 4.5562 -2.4338 0.5117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399264558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:08 Heat of formation + Delta-G solvation = 58.659310 kcal Electronic energy + Delta-G solvation = -21820.279752 eV Core-core repulsion = 18773.330915 eV Total energy + Delta-G solvation = -3046.948837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31460 -38.67951 -34.89301 -33.83542 -32.44297 -30.86004 -30.21996 -29.51338 -28.00396 -25.69174 -25.22364 -23.33445 -22.60688 -20.71761 -20.39065 -19.21039 -18.91410 -16.57307 -16.29980 -16.02598 -15.10706 -14.85511 -14.53876 -14.44355 -13.88733 -13.59301 -13.51650 -13.41525 -13.09749 -12.84878 -12.64801 -12.37406 -12.25344 -12.05983 -11.87478 -11.82956 -11.50222 -11.09182 -10.82667 -10.66526 -10.61082 -10.50821 -10.27120 -9.97215 -9.53400 -9.11012 -9.05089 -8.88191 -8.48885 -8.30998 -8.18658 -5.96255 -3.97729 1.83041 2.52503 2.74705 3.34889 3.39449 3.41699 4.08375 4.48574 4.49600 4.54088 4.87523 5.07702 5.12988 5.22540 5.28537 5.29447 5.39069 5.42114 5.46777 5.51055 5.56447 5.62328 5.71845 5.80847 5.81737 5.87227 5.97792 6.12409 6.17329 6.24263 6.41467 6.54981 6.65471 6.69539 6.95953 7.00890 7.08970 7.19456 7.24116 7.32472 7.71011 7.76435 7.87690 8.04242 8.47456 9.08595 9.65745 11.15109 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.003917 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.360037 B = 7147.024546 C = 7903.889505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.069 3.931 3 C -0.271 4.271 4 C 0.106 3.894 5 C 0.113 3.887 6 N -0.533 5.533 7 C 0.053 3.947 8 C -0.098 4.098 9 C -0.082 4.082 10 C 0.029 3.971 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.111 4.111 20 C 0.060 3.940 21 N -0.361 5.361 22 C 0.101 3.899 23 N -0.301 5.301 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -6.442 -18.708 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.096 4.096 3 C -0.301 4.301 4 C -0.023 4.023 5 C -0.017 4.017 6 N -0.259 5.259 7 C -0.074 4.074 8 C -0.136 4.136 9 C -0.100 4.100 10 C -0.008 4.008 11 C -0.554 4.554 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.149 4.149 20 C -0.068 4.068 21 N -0.143 5.143 22 C -0.040 4.040 23 N -0.125 5.125 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.161 0.839 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.521 -8.299 -18.316 20.852 hybrid contribution -0.562 2.227 0.339 2.322 sum -6.083 -6.072 -17.977 19.926 Atomic orbital electron populations 1.20146 0.86905 1.03263 1.02601 1.22238 0.96793 0.90803 0.99777 1.21099 0.91046 0.99667 1.18250 1.20875 0.96489 0.84519 1.00424 1.20617 0.92566 0.96713 0.91776 1.61962 1.03503 1.51179 1.09214 1.22286 0.94988 0.94916 0.95198 1.21529 0.98040 1.01297 0.92702 1.21244 0.93511 0.96930 0.98354 1.19105 0.96104 0.97081 0.88531 1.21219 1.12030 1.28764 0.93340 0.92766 1.25011 0.95341 0.95974 0.98104 1.69956 1.28363 1.43503 1.11800 0.86715 0.81168 0.81081 0.79382 1.20264 1.21359 1.20335 1.21686 0.98743 1.01431 0.93027 1.22130 0.89416 0.96310 0.98898 1.48300 1.05319 1.04202 1.56430 1.21857 0.84387 0.95045 1.02714 1.77272 0.86399 1.22756 1.26036 0.90835 0.91091 0.90465 0.83922 0.89928 0.92329 0.95264 0.90959 0.92086 0.90863 0.92990 0.96587 0.96802 0.93048 0.91659 0.91989 0.91602 0.95050 0.91311 0.88639 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.01 0.38 -0.28 16 2 C 0.07 0.91 7.22 -82.41 -0.59 0.32 16 3 C -0.27 -3.48 9.47 -40.01 -0.38 -3.86 16 4 C 0.11 1.36 5.67 -82.26 -0.47 0.89 16 5 C 0.11 1.28 4.90 -4.97 -0.02 1.26 16 6 N -0.53 -7.35 4.65 -236.11 -1.10 -8.45 16 7 C 0.05 0.83 5.29 -3.83 -0.02 0.81 16 8 C -0.10 -1.86 5.15 -26.65 -0.14 -1.99 16 9 C -0.08 -1.64 2.20 -90.50 -0.20 -1.84 16 10 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 11 C -0.52 -14.38 8.44 -34.44 -0.29 -14.68 16 12 H 0.05 1.47 7.08 -52.48 -0.37 1.10 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.11 -1.85 5.38 -26.65 -0.14 -1.99 16 20 C 0.06 0.81 5.46 -3.83 -0.02 0.79 16 21 N -0.36 -4.78 4.01 -63.88 -0.26 -5.04 16 22 C 0.10 0.98 11.16 59.85 0.67 1.65 16 23 N -0.30 -4.42 12.58 33.67 0.42 -4.00 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.13 6.22 -51.93 -0.32 0.80 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 41 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.89 7.80 -51.93 -0.41 0.48 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -32.10 350.42 -9.15 -41.25 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.76 Total: -2.63 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -1.45 Total: -16.81 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.19 Total: -43.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.10 -9.15 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399264558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.912 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds