Wall clock time and date at job start Thu Apr 9 2020 13:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39869 * 125.90288 * 2 1 4 4 C 1.35312 * 107.91889 * 180.26703 * 3 2 1 5 5 C 1.50703 * 126.12327 * 179.76047 * 4 3 2 6 6 N 1.46900 * 109.47317 * 95.02718 * 5 4 3 7 7 C 1.46847 * 110.99375 * 294.20985 * 6 5 4 8 8 C 1.53042 * 109.52360 * 174.16248 * 7 6 5 9 9 C 1.53117 * 109.27644 * 59.17160 * 8 7 6 10 10 C 1.53003 * 109.52198 * 182.44170 * 9 8 7 11 11 C 1.50698 * 109.47571 * 294.68810 * 10 9 8 12 12 H 1.08005 * 119.99528 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00553 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99539 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47347 * 60.00437 * 15 13 11 17 17 H 1.48501 * 109.46718 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47082 * 299.99749 * 15 13 11 19 19 C 1.53120 * 109.16670 * 302.34989 * 9 8 7 20 20 C 1.46845 * 111.00074 * 169.99919 * 6 5 4 21 21 N 1.34951 * 107.74772 * 359.61173 * 4 3 2 22 22 C 1.46501 * 126.03602 * 180.15058 * 21 4 3 23 23 N 1.30837 * 125.89523 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47632 * 89.99340 * 1 2 3 25 25 H 1.09001 * 109.47080 * 210.00292 * 1 2 3 26 26 H 1.09003 * 109.46734 * 329.99771 * 1 2 3 27 27 H 1.08002 * 126.03560 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.46992 * 215.02578 * 5 4 3 29 29 H 1.08994 * 109.47530 * 335.02037 * 5 4 3 30 30 H 1.09006 * 109.46188 * 294.17124 * 7 6 5 31 31 H 1.08993 * 109.46752 * 54.14505 * 7 6 5 32 32 H 1.09002 * 109.49936 * 299.23665 * 8 7 6 33 33 H 1.08995 * 109.54132 * 179.13675 * 8 7 6 34 34 H 1.09001 * 109.57633 * 62.29130 * 9 8 7 35 35 H 1.09000 * 109.46720 * 54.68610 * 10 9 8 36 36 H 1.09003 * 109.47511 * 174.68611 * 10 9 8 37 37 H 0.97002 * 119.99602 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.49884 * 297.71277 * 19 9 8 39 39 H 1.08996 * 109.53725 * 177.61656 * 19 9 8 40 40 H 1.08998 * 109.46291 * 305.84848 * 20 6 5 41 41 H 1.09003 * 109.46465 * 65.83264 * 20 6 5 42 42 H 1.09000 * 109.47158 * 270.30686 * 22 21 4 43 43 H 1.09007 * 109.47094 * 30.30534 * 22 21 4 44 44 H 1.08997 * 109.47044 * 150.30647 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7152 -0.0060 5 6 4.8350 1.5987 -0.0133 6 7 5.3099 1.7892 1.3637 7 6 4.3314 2.5428 2.1581 8 6 4.7898 2.5964 3.6173 9 6 6.1629 3.2700 3.6914 10 6 6.6539 3.2719 5.1405 11 6 5.7475 4.1379 5.9769 12 1 4.9056 4.6373 5.5204 13 6 5.9928 4.2927 7.3248 14 7 7.0182 3.6850 7.8805 15 14 4.8688 5.3656 8.3616 16 1 3.4851 4.8294 8.3082 17 1 5.3455 5.3676 9.7680 18 1 4.8828 6.7532 7.8328 19 6 7.1515 2.4935 2.8173 20 6 6.6247 2.4430 1.3813 21 7 3.6087 -0.6343 -0.0010 22 6 4.7898 -1.5010 -0.0016 23 7 2.2741 -1.0599 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.9924 2.1598 -0.0004 28 1 5.6198 1.1292 -0.6065 29 1 4.5811 2.5658 -0.4471 30 1 4.2488 3.5566 1.7660 31 1 3.3605 2.0510 2.1003 32 1 4.8594 1.5836 4.0143 33 1 4.0716 3.1688 4.2043 34 1 6.0863 4.2960 3.3315 35 1 6.6434 2.2536 5.5290 36 1 7.6697 3.6653 5.1795 37 1 7.1906 3.7936 8.8289 38 1 7.2583 1.4791 3.2017 39 1 8.1207 2.9920 2.8320 40 1 7.3193 1.8784 0.7593 41 1 6.5313 3.4572 0.9930 42 1 5.0827 -1.7154 -1.0294 43 1 5.6093 -0.9987 0.5125 44 1 4.5562 -2.4338 0.5117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399264558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:07 Heat of formation + Delta-G solvation = 38.778000 kcal Electronic energy + Delta-G solvation = -21821.141871 eV Core-core repulsion = 18773.330915 eV Total energy + Delta-G solvation = -3047.810956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24202 -39.95681 -36.38143 -34.88112 -34.25575 -32.08731 -31.48382 -30.35604 -29.57981 -27.01516 -26.15899 -24.96718 -23.94601 -22.27308 -21.31562 -20.43978 -20.10410 -18.42707 -17.50300 -17.13539 -16.54039 -16.07946 -15.89683 -15.56608 -15.08521 -14.90661 -14.64663 -14.36389 -14.29251 -14.12944 -13.91953 -13.50779 -13.37643 -13.16705 -13.11044 -12.97957 -12.82871 -12.70512 -12.57601 -12.25004 -12.16249 -12.00153 -11.67233 -11.47329 -11.24879 -10.88503 -10.71110 -10.51420 -10.04713 -9.42745 -9.23976 -8.17240 -6.26780 0.88744 1.39294 1.42010 1.49588 1.69178 1.81297 2.41823 3.03406 3.16063 3.61864 3.67727 3.99875 4.03545 4.12203 4.14615 4.34677 4.40820 4.44585 4.50235 4.53311 4.61202 4.67860 4.72133 4.75911 4.79831 4.84281 4.84689 4.95804 4.98388 5.07812 5.10758 5.16126 5.31168 5.39121 5.42802 5.45537 5.58272 5.81136 5.81572 5.89469 6.08971 6.10426 6.22315 6.30661 6.82650 6.89504 7.41663 8.94504 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.003917 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.360037 B = 7147.024546 C = 7903.889505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.058 3.942 3 C -0.285 4.285 4 C 0.098 3.902 5 C 0.118 3.882 6 N -0.543 5.543 7 C 0.068 3.932 8 C -0.092 4.092 9 C -0.074 4.074 10 C 0.034 3.966 11 C -0.531 4.531 12 H 0.060 0.940 13 C -0.001 4.001 14 N -0.936 5.936 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.266 1.266 19 C -0.107 4.107 20 C 0.068 3.932 21 N -0.370 5.370 22 C 0.095 3.905 23 N -0.337 5.337 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.051 0.949 35 H -0.016 1.016 36 H -0.013 1.013 37 H 0.262 0.738 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -5.648 -20.600 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.107 4.107 3 C -0.315 4.315 4 C -0.031 4.031 5 C -0.010 4.010 6 N -0.268 5.268 7 C -0.060 4.060 8 C -0.130 4.130 9 C -0.093 4.093 10 C -0.003 4.003 11 C -0.569 4.569 12 H 0.078 0.922 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.145 4.145 20 C -0.059 4.059 21 N -0.151 5.151 22 C -0.045 4.045 23 N -0.162 5.162 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.173 0.827 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.002 0.998 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.248 -7.512 -20.230 22.466 hybrid contribution -0.300 1.935 0.944 2.174 sum -6.548 -5.576 -19.286 21.117 Atomic orbital electron populations 1.20257 0.84880 1.03837 1.03806 1.22822 0.98322 0.90634 0.98946 1.21394 0.91299 1.00290 1.18497 1.21183 0.97126 0.84662 1.00106 1.20687 0.92720 0.97350 0.90262 1.61852 1.03252 1.50887 1.10845 1.22021 0.95267 0.95828 0.92839 1.21380 0.96876 0.99341 0.95354 1.21091 0.95064 0.97775 0.95368 1.19001 0.94632 0.94518 0.92140 1.21643 1.12364 1.28848 0.94051 0.92213 1.25944 0.96889 0.97413 0.99626 1.70099 1.30256 1.45115 1.12190 0.85595 0.79145 0.79472 0.77435 1.19355 1.21011 1.19085 1.21596 0.98104 0.99945 0.94821 1.22063 0.89645 0.97623 0.96534 1.48607 1.05546 1.04811 1.56171 1.22069 0.83490 0.94669 1.04263 1.77218 0.87421 1.23976 1.27552 0.89243 0.91221 0.89146 0.82685 0.87422 0.90821 0.94237 0.90992 0.94209 0.92899 0.93028 0.99755 0.99435 0.92964 0.92905 0.91590 0.88352 0.93990 0.89059 0.88119 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.45 71.24 0.74 -0.46 16 2 C 0.06 1.45 7.22 43.10 0.31 1.76 16 3 C -0.28 -6.83 9.47 21.99 0.21 -6.62 16 4 C 0.10 2.32 5.67 41.40 0.23 2.55 16 5 C 0.12 2.27 4.90 85.56 0.42 2.69 16 6 N -0.54 -13.51 4.65 -900.92 -4.19 -17.70 16 7 C 0.07 2.00 5.29 86.33 0.46 2.45 16 8 C -0.09 -3.50 5.15 30.65 0.16 -3.34 16 9 C -0.07 -3.01 2.20 -10.71 -0.02 -3.04 16 10 C 0.03 1.81 4.45 29.85 0.13 1.95 16 11 C -0.53 -30.30 8.44 25.60 0.22 -30.08 16 12 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 13 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 14 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 15 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.11 -3.46 5.38 30.65 0.16 -3.30 16 20 C 0.07 1.62 5.46 86.33 0.47 2.09 16 21 N -0.37 -9.23 4.01 -356.02 -1.43 -10.66 16 22 C 0.10 1.68 11.16 127.77 1.43 3.10 16 23 N -0.34 -9.65 12.58 -47.38 -0.60 -10.25 16 24 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.11 1.56 7.84 -2.38 -0.02 1.55 16 29 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 30 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 2.14 6.22 -2.39 -0.01 2.12 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 2.19 7.05 -2.39 -0.02 2.17 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 1.77 8.02 -2.39 -0.02 1.75 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.64 7.80 -2.38 -0.02 1.63 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.06 350.42 2.43 -68.64 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.95 Total: 10.59 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 5.38 Total: -29.85 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -5.93 Total: -96.22 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -71.06 2.43 -68.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399264558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.414 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds