Wall clock time and date at job start Thu Apr 9 2020 13:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99931 * 2 1 4 4 H 1.48495 * 109.47209 * 240.00466 * 3 2 1 5 5 H 1.48499 * 109.46678 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46883 * 120.00089 * 3 2 1 7 7 C 1.37879 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46941 * 180.02562 * 9 7 2 11 11 C 1.53119 * 109.52212 * 174.99917 * 10 9 7 12 12 C 1.53041 * 109.27947 * 177.62475 * 11 10 9 13 13 N 1.46847 * 109.51947 * 300.82007 * 12 11 10 14 14 C 1.46906 * 111.00074 * 185.84173 * 13 12 11 15 15 C 1.52994 * 109.47169 * 169.99894 * 14 13 12 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 13 17 17 N 1.46498 * 109.47332 * 180.02562 * 16 15 14 18 18 C 1.36881 * 126.39751 * 89.99853 * 17 16 15 19 19 C 1.34668 * 106.81875 * 180.02562 * 18 17 16 20 20 N 1.34134 * 108.01972 * 359.97438 * 19 18 17 21 21 C 1.30501 * 109.25535 * 0.02562 * 20 19 18 22 22 C 1.46847 * 111.19949 * 61.74382 * 13 12 11 23 23 C 1.53034 * 109.52244 * 298.25650 * 22 13 12 24 24 H 0.97006 * 120.00604 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47082 * 60.00047 * 9 7 2 26 26 H 1.08997 * 109.46973 * 300.00196 * 9 7 2 27 27 H 1.09003 * 109.52489 * 54.87094 * 10 9 7 28 28 H 1.09004 * 109.50323 * 57.67958 * 11 10 9 29 29 H 1.08998 * 109.50636 * 297.56624 * 11 10 9 30 30 H 1.09003 * 109.46323 * 180.81131 * 12 11 10 31 31 H 1.08987 * 109.45517 * 60.82842 * 12 11 10 32 32 H 1.09000 * 109.46780 * 49.99726 * 14 13 12 33 33 H 1.09004 * 109.46868 * 289.99989 * 14 13 12 34 34 H 1.09000 * 109.47407 * 60.00216 * 15 14 13 35 35 H 1.08991 * 109.47567 * 299.99619 * 15 14 13 36 36 H 1.08997 * 109.46927 * 60.00502 * 16 15 14 37 37 H 1.09004 * 109.47199 * 300.00150 * 16 15 14 38 38 H 1.08003 * 126.59103 * 359.97438 * 18 17 16 39 39 H 1.08001 * 125.99672 * 180.02562 * 19 18 17 40 40 H 1.07996 * 125.64878 * 179.97438 * 21 20 19 41 41 H 1.09003 * 109.46154 * 58.27075 * 22 13 12 42 42 H 1.08999 * 109.45974 * 178.23839 * 22 13 12 43 43 H 1.08999 * 109.50544 * 299.23721 * 23 22 13 44 44 H 1.08997 * 109.50249 * 179.11808 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4851 -4.9852 0.1253 12 6 2.4795 -6.1469 0.0651 13 7 3.2112 -6.1011 -1.2073 14 6 4.0755 -7.2791 -1.3603 15 6 4.6255 -7.3262 -2.7872 16 6 5.5262 -8.5528 -2.9463 17 7 6.0534 -8.5976 -4.3124 18 6 7.2156 -8.0247 -4.7538 19 6 7.3156 -8.3079 -6.0665 20 7 6.2440 -9.0345 -6.4171 21 6 5.4835 -9.2118 -5.3715 22 6 3.9865 -4.8601 -1.3296 23 6 3.0371 -3.6600 -1.3110 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8896 27 1 2.9313 -3.5547 0.8397 28 1 0.7714 -5.0742 -0.6938 29 1 0.9532 -5.0104 1.0763 30 1 1.9400 -7.0911 0.1399 31 1 3.1843 -6.0647 0.8924 32 1 3.4972 -8.1820 -1.1638 33 1 4.9031 -7.2167 -0.6537 34 1 5.2038 -6.4234 -2.9837 35 1 3.7980 -7.3887 -3.4938 36 1 4.9483 -9.4558 -2.7498 37 1 6.3538 -8.4900 -2.2398 38 1 7.9171 -7.4543 -4.1629 39 1 8.1184 -8.0041 -6.7221 40 1 4.5524 -9.7588 -5.3559 41 1 4.6843 -4.7841 -0.4957 42 1 4.5416 -4.8696 -2.2677 43 1 2.3479 -3.7281 -2.1527 44 1 3.6142 -2.7383 -1.3861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399281663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:10 Heat of formation + Delta-G solvation = 43.293636 kcal Electronic energy + Delta-G solvation = -21096.550869 eV Core-core repulsion = 18048.935726 eV Total energy + Delta-G solvation = -3047.615143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20418 -38.97617 -36.00492 -34.26594 -32.48365 -30.94036 -30.37331 -29.58725 -27.88142 -25.53378 -23.67009 -22.94932 -21.63424 -21.52255 -20.97171 -20.56914 -18.96908 -17.68559 -16.27561 -15.80240 -15.69272 -15.33179 -14.66362 -14.48278 -14.37516 -14.04518 -13.86052 -13.55442 -13.39998 -13.14320 -12.89510 -12.48981 -12.19359 -11.96051 -11.86289 -11.50746 -11.21984 -11.00334 -10.84161 -10.69848 -10.58171 -10.29314 -10.17125 -9.98291 -9.81875 -9.55666 -9.07396 -8.90462 -8.72046 -8.33687 -8.20102 -5.98297 -4.00054 1.85556 2.53983 3.00418 3.32710 3.37606 3.39444 3.90433 4.26028 4.46323 4.52655 4.59625 4.69503 4.79954 4.90739 5.06266 5.23531 5.26446 5.31158 5.36880 5.42505 5.45824 5.52520 5.66255 5.69656 5.81815 5.85255 5.95380 6.06379 6.09256 6.19540 6.40167 6.52683 6.53650 6.62940 6.94204 6.96226 7.06555 7.16762 7.25381 7.30088 7.68896 7.85544 7.88360 8.02103 8.44984 9.06278 9.63431 11.13000 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.002981 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.555177 B = 9389.670168 C =10166.073074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.112 4.112 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.059 3.941 15 C -0.133 4.133 16 C 0.105 3.895 17 N -0.456 5.456 18 C -0.056 4.056 19 C -0.033 4.033 20 N -0.499 5.499 21 C 0.182 3.818 22 C 0.053 3.947 23 C -0.100 4.100 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.203 0.797 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.414 -18.745 -3.866 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.261 5.261 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.018 4.018 17 N -0.139 5.139 18 C -0.189 4.189 19 C -0.181 4.181 20 N -0.217 5.217 21 C -0.101 4.101 22 C -0.074 4.074 23 C -0.138 4.138 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.220 0.780 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.698 -18.926 -4.878 22.281 hybrid contribution 1.211 1.376 1.551 2.401 sum 11.910 -17.550 -3.327 21.469 Atomic orbital electron populations 1.69950 1.06029 1.26607 1.50965 1.25017 0.94803 0.99129 0.95505 0.86714 0.79632 0.83441 0.78546 1.20263 1.21332 1.20362 1.21211 0.92850 0.91059 1.50303 0.92807 1.19105 0.93608 0.91024 0.97121 1.21233 0.97889 0.94801 0.96064 1.21698 0.97531 0.94225 1.01564 1.22103 0.96272 0.99511 0.88832 1.61917 1.27745 1.01607 1.34823 1.21940 0.95531 0.94675 0.94842 1.21988 0.99531 0.97153 0.98462 1.21915 0.99014 1.00627 0.80212 1.45613 1.18163 1.39957 1.10154 1.22755 0.92241 1.06437 0.97472 1.22306 0.99181 1.02961 0.93654 1.70293 1.04952 1.18241 1.28208 1.25009 1.01105 1.01966 0.82012 1.22266 0.95389 0.90062 0.99676 1.21546 0.97852 0.95461 0.98920 0.93008 0.96508 0.96779 0.93105 0.91561 0.92073 0.91614 0.95392 0.90780 0.95024 0.90857 0.90078 0.88710 0.89148 0.81072 0.81504 0.78036 0.95501 0.91549 0.91854 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.31 8.45 -34.44 -0.29 -14.60 16 8 H 0.05 1.44 7.08 -52.49 -0.37 1.07 16 9 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 10 C -0.08 -1.62 2.20 -90.50 -0.20 -1.82 16 11 C -0.11 -1.88 5.38 -26.65 -0.14 -2.03 16 12 C 0.06 0.82 5.46 -3.83 -0.02 0.80 16 13 N -0.54 -7.07 4.66 -234.67 -1.09 -8.16 16 14 C 0.06 0.55 4.96 -3.82 -0.02 0.53 16 15 C -0.13 -1.11 5.47 -26.73 -0.15 -1.26 16 16 C 0.11 0.66 6.15 -4.04 -0.02 0.63 16 17 N -0.46 -3.95 2.75 -118.58 -0.33 -4.28 16 18 C -0.06 -0.51 11.58 -16.56 -0.19 -0.70 16 19 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 20 N -0.50 -6.17 11.25 -14.66 -0.16 -6.33 16 21 C 0.18 1.78 12.56 -90.37 -1.14 0.64 16 22 C 0.05 0.78 5.29 -3.84 -0.02 0.76 16 23 C -0.10 -1.84 5.15 -26.65 -0.14 -1.97 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 31 H 0.03 0.38 8.14 -51.94 -0.42 -0.04 16 32 H 0.07 0.60 7.99 -51.93 -0.41 0.18 16 33 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 34 H 0.07 0.72 6.43 -51.93 -0.33 0.38 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.89 6.21 -51.93 -0.32 0.56 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.43 7.06 -51.93 -0.37 1.07 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -32.31 350.18 -11.05 -43.37 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.70 Total: -2.78 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.76 Total: -17.47 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.85 Total: -44.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.31 -11.05 -43.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399281663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.660 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds