Wall clock time and date at job start Thu Apr 9 2020 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.35905 * 116.99842 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05461 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.93863 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.06013 * 0.02562 * 6 5 4 8 8 C 1.38240 * 120.11169 * 359.97438 * 7 6 5 9 9 C 1.38169 * 120.05510 * 359.68546 * 8 7 6 10 10 C 1.50701 * 120.02936 * 180.29773 * 9 8 7 11 11 N 1.46899 * 109.47175 * 260.31562 * 10 9 8 12 12 C 1.46900 * 111.00022 * 66.04561 * 11 10 9 13 13 C 1.46897 * 111.00469 * 190.00163 * 11 10 9 14 14 H 1.09003 * 109.46972 * 54.99480 * 13 11 10 15 15 C 1.53002 * 109.46642 * 295.00194 * 13 11 10 16 16 C 1.53001 * 109.47448 * 174.99917 * 13 11 10 17 17 C 1.50690 * 109.47071 * 295.00163 * 16 13 11 18 18 H 1.08008 * 120.00307 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00280 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99747 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00525 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46929 * 59.99500 * 21 19 17 23 23 H 1.48503 * 109.47551 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47223 * 299.99658 * 21 19 17 25 25 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 30 30 H 1.07997 * 120.02528 * 359.97438 * 5 4 3 31 31 H 1.08005 * 119.96887 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.94689 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.97593 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47197 * 20.31670 * 10 9 8 35 35 H 1.09000 * 109.47368 * 140.31301 * 10 9 8 36 36 H 1.08997 * 109.47087 * 59.99549 * 12 11 10 37 37 H 1.08998 * 109.47383 * 180.02562 * 12 11 10 38 38 H 1.09011 * 109.46962 * 300.00208 * 12 11 10 39 39 H 1.09001 * 109.47707 * 60.00059 * 15 13 11 40 40 H 1.09005 * 109.46882 * 179.97438 * 15 13 11 41 41 H 1.08997 * 109.47141 * 299.99669 * 15 13 11 42 42 H 1.09003 * 109.46627 * 54.99992 * 16 13 11 43 43 H 1.08999 * 109.46671 * 174.99809 * 16 13 11 44 44 H 0.96998 * 120.00320 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6095 -0.0027 7 6 6.0962 1.8878 -0.0022 8 6 5.2552 2.9849 -0.0011 9 6 3.8851 2.8066 -0.0071 10 6 2.9689 4.0030 -0.0128 11 7 2.4800 4.2518 1.3500 12 6 3.5782 4.6569 2.2375 13 6 1.4065 5.2546 1.3494 14 1 0.6147 4.9388 0.6701 15 6 1.9671 6.6014 0.8881 16 6 0.8393 5.3955 2.7634 17 6 0.1782 4.1040 3.1704 18 1 0.1635 3.2665 2.4886 19 6 -0.4090 3.9918 4.4128 20 7 -0.3916 5.0118 5.2429 21 14 -1.2292 2.3911 4.9172 22 1 -0.2294 1.2933 4.8923 23 1 -1.7796 2.5278 6.2896 24 1 -2.3302 2.0793 3.9707 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5728 -0.0016 31 1 6.2281 -0.2461 -0.0039 32 1 7.1669 2.0293 -0.0026 33 1 5.6694 3.9823 -0.0003 34 1 3.5147 4.8771 -0.3682 35 1 2.1231 3.8099 -0.6726 36 1 4.0342 5.5710 1.8574 37 1 3.1887 4.8343 3.2400 38 1 4.3268 3.8653 2.2738 39 1 2.3711 6.5011 -0.1193 40 1 1.1705 7.3454 0.8872 41 1 2.7589 6.9172 1.5673 42 1 1.6477 5.6246 3.4578 43 1 0.1053 6.2011 2.7817 44 1 -0.8044 4.9327 6.1171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411176942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:17 Heat of formation + Delta-G solvation = -13.744365 kcal Electronic energy + Delta-G solvation = -22509.964469 eV Core-core repulsion = 19427.583221 eV Total energy + Delta-G solvation = -3082.381247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.08564 -37.86143 -37.02325 -33.15989 -32.03382 -31.41081 -29.85399 -29.18333 -27.39255 -26.45402 -24.07915 -23.84699 -22.67431 -21.42238 -20.69678 -18.61471 -17.85571 -16.10099 -15.93363 -15.79860 -15.62834 -15.29106 -14.51927 -14.29150 -13.84142 -13.64923 -13.25283 -13.13933 -12.82118 -12.49873 -12.42046 -12.09441 -11.84827 -11.69568 -11.54866 -11.49503 -11.34321 -11.13664 -10.80106 -10.72210 -10.57856 -10.54085 -10.41924 -10.27568 -9.83883 -9.09646 -8.91498 -8.70187 -8.18552 -7.89523 -7.30153 -5.81955 -3.78405 1.46923 1.65240 3.43700 3.46618 3.47230 3.50706 3.90724 4.61671 4.83809 4.91433 4.96580 5.06802 5.19062 5.20287 5.35960 5.41303 5.50877 5.55424 5.66915 5.78337 5.82450 5.86697 5.91997 5.97318 6.04526 6.09357 6.17184 6.22318 6.28818 6.32950 6.50837 6.54698 6.61681 6.69861 6.75329 6.86982 6.98377 7.08156 7.63280 7.71019 7.80033 8.03863 8.13548 8.21624 8.67490 9.28249 9.82443 11.30335 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006630 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.983161 B = 4222.465461 C = 5351.694579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.292 6.292 4 C 0.157 3.843 5 C -0.217 4.217 6 C -0.087 4.087 7 C -0.166 4.166 8 C -0.078 4.078 9 C -0.101 4.101 10 C 0.100 3.900 11 N -0.502 5.502 12 C 0.025 3.975 13 C 0.087 3.913 14 H 0.069 0.931 15 C -0.185 4.185 16 C 0.029 3.971 17 C -0.484 4.484 18 H 0.062 0.938 19 C 0.049 3.951 20 N -0.906 5.906 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.279 1.279 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.012 0.988 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.017 0.983 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -7.364 -12.598 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.204 6.204 4 C 0.111 3.889 5 C -0.236 4.236 6 C -0.105 4.105 7 C -0.184 4.184 8 C -0.097 4.097 9 C -0.102 4.102 10 C -0.027 4.027 11 N -0.225 5.225 12 C -0.123 4.123 13 C -0.020 4.020 14 H 0.087 0.913 15 C -0.244 4.244 16 C -0.008 4.008 17 C -0.523 4.523 18 H 0.080 0.920 19 C -0.150 4.150 20 N -0.548 5.548 21 Si 0.716 3.284 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.205 1.205 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.031 0.969 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.252 -7.614 -12.237 17.127 hybrid contribution 0.056 -0.425 0.178 0.464 sum 9.308 -8.040 -12.060 17.225 Atomic orbital electron populations 1.21761 0.92751 1.02298 1.04209 1.22724 0.96116 0.82474 1.00541 1.86251 1.18373 1.28238 1.87569 1.18788 0.82692 0.93257 0.94197 1.21204 0.94428 0.97902 1.10041 1.20821 0.94236 0.97067 0.98370 1.20912 0.99392 0.92528 1.05551 1.20870 0.91926 0.98839 0.98046 1.19255 0.93673 0.92768 1.04548 1.20864 0.96528 0.92658 0.92688 1.62099 1.09421 1.45073 1.05864 1.22408 0.93589 0.97244 0.99075 1.21926 0.92151 0.86655 1.01317 0.91275 1.22538 1.01492 1.00670 0.99676 1.19226 0.95621 0.97246 0.88708 1.21173 1.32913 0.98528 0.99672 0.91976 1.24995 0.96985 0.96027 0.96951 1.69956 1.46316 1.30289 1.08214 0.86730 0.79701 0.84734 0.77218 1.20468 1.21760 1.20516 0.91688 0.90927 0.90660 0.92830 0.92308 0.85912 0.86410 0.86425 0.85988 0.95089 0.90406 0.96927 0.90005 0.92849 0.94201 0.92649 0.92927 0.96194 0.96460 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 37.16 0.38 -1.55 16 2 C 0.06 0.75 5.46 37.16 0.20 0.96 16 3 O -0.29 -4.97 9.37 -19.44 -0.18 -5.15 16 4 C 0.16 2.54 6.66 -39.22 -0.26 2.28 16 5 C -0.22 -2.97 9.04 -39.43 -0.36 -3.33 16 6 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 7 C -0.17 -2.03 10.04 -39.57 -0.40 -2.43 16 8 C -0.08 -1.07 8.70 -39.61 -0.34 -1.42 16 9 C -0.10 -1.62 4.60 -104.47 -0.48 -2.10 16 10 C 0.10 1.70 4.20 -4.98 -0.02 1.68 16 11 N -0.50 -10.04 4.46 -236.32 -1.05 -11.10 16 12 C 0.03 0.48 8.47 60.06 0.51 0.99 16 13 C 0.09 1.84 2.29 -67.71 -0.16 1.69 16 14 H 0.07 1.50 8.03 -51.93 -0.42 1.09 16 15 C -0.18 -3.28 8.50 37.16 0.32 -2.97 16 16 C 0.03 0.75 4.27 -27.89 -0.12 0.63 16 17 C -0.48 -13.82 8.84 -34.45 -0.30 -14.12 16 18 H 0.06 1.79 7.74 -52.48 -0.41 1.38 16 19 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 20 N -0.91 -27.72 13.29 55.43 0.74 -26.99 16 21 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 29 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 30 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 31 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 34 H 0.03 0.48 6.80 -51.93 -0.35 0.13 16 35 H 0.08 1.36 7.71 -51.93 -0.40 0.96 16 36 H 0.01 0.21 6.51 -51.93 -0.34 -0.12 16 37 H 0.08 1.78 6.03 -51.93 -0.31 1.47 16 38 H 0.05 0.96 6.63 -51.92 -0.34 0.62 16 39 H 0.04 0.62 6.75 -51.93 -0.35 0.27 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 42 H 0.02 0.55 6.10 -51.93 -0.32 0.23 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -31.50 348.40 -9.01 -40.52 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.22 Total: -0.13 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.52 Total: -19.80 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.32 Total: -38.08 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.18 Total: -5.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.50 -9.01 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411176942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.771 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds