Wall clock time and date at job start Thu Apr 9 2020 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47079 * 2 1 4 4 C 1.35905 * 116.99842 * 180.02562 * 3 2 1 5 5 C 1.38757 * 120.05461 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.93863 * 179.97438 * 5 4 3 7 7 C 1.38280 * 120.06013 * 0.02562 * 6 5 4 8 8 C 1.38240 * 120.11169 * 359.97438 * 7 6 5 9 9 C 1.38169 * 120.05510 * 359.68546 * 8 7 6 10 10 C 1.50701 * 120.02936 * 180.29773 * 9 8 7 11 11 N 1.46899 * 109.47175 * 260.31562 * 10 9 8 12 12 C 1.46900 * 111.00022 * 66.04561 * 11 10 9 13 13 C 1.46897 * 111.00469 * 190.00163 * 11 10 9 14 14 H 1.09003 * 109.46972 * 54.99480 * 13 11 10 15 15 C 1.53002 * 109.46642 * 295.00194 * 13 11 10 16 16 C 1.53001 * 109.47448 * 174.99917 * 13 11 10 17 17 C 1.50690 * 109.47071 * 295.00163 * 16 13 11 18 18 H 1.08008 * 120.00307 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00280 * 180.02562 * 17 16 13 20 20 N 1.31520 * 119.99747 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00525 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46929 * 59.99500 * 21 19 17 23 23 H 1.48503 * 109.47551 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47223 * 299.99658 * 21 19 17 25 25 H 1.09004 * 109.47059 * 59.99375 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99773 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00226 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00170 * 2 1 3 30 30 H 1.07997 * 120.02528 * 359.97438 * 5 4 3 31 31 H 1.08005 * 119.96887 * 180.02562 * 6 5 4 32 32 H 1.08002 * 119.94689 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.97593 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47197 * 20.31670 * 10 9 8 35 35 H 1.09000 * 109.47368 * 140.31301 * 10 9 8 36 36 H 1.08997 * 109.47087 * 59.99549 * 12 11 10 37 37 H 1.08998 * 109.47383 * 180.02562 * 12 11 10 38 38 H 1.09011 * 109.46962 * 300.00208 * 12 11 10 39 39 H 1.09001 * 109.47707 * 60.00059 * 15 13 11 40 40 H 1.09005 * 109.46882 * 179.97438 * 15 13 11 41 41 H 1.08997 * 109.47141 * 299.99669 * 15 13 11 42 42 H 1.09003 * 109.46627 * 54.99992 * 16 13 11 43 43 H 1.08999 * 109.46671 * 174.99809 * 16 13 11 44 44 H 0.96998 * 120.00320 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6095 -0.0027 7 6 6.0962 1.8878 -0.0022 8 6 5.2552 2.9849 -0.0011 9 6 3.8851 2.8066 -0.0071 10 6 2.9689 4.0030 -0.0128 11 7 2.4800 4.2518 1.3500 12 6 3.5782 4.6569 2.2375 13 6 1.4065 5.2546 1.3494 14 1 0.6147 4.9388 0.6701 15 6 1.9671 6.6014 0.8881 16 6 0.8393 5.3955 2.7634 17 6 0.1782 4.1040 3.1704 18 1 0.1635 3.2665 2.4886 19 6 -0.4090 3.9918 4.4128 20 7 -0.3916 5.0118 5.2429 21 14 -1.2292 2.3911 4.9172 22 1 -0.2294 1.2933 4.8923 23 1 -1.7796 2.5278 6.2896 24 1 -2.3302 2.0793 3.9707 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.7886 -0.5728 -0.0016 31 1 6.2281 -0.2461 -0.0039 32 1 7.1669 2.0293 -0.0026 33 1 5.6694 3.9823 -0.0003 34 1 3.5147 4.8771 -0.3682 35 1 2.1231 3.8099 -0.6726 36 1 4.0342 5.5710 1.8574 37 1 3.1887 4.8343 3.2400 38 1 4.3268 3.8653 2.2738 39 1 2.3711 6.5011 -0.1193 40 1 1.1705 7.3454 0.8872 41 1 2.7589 6.9172 1.5673 42 1 1.6477 5.6246 3.4578 43 1 0.1053 6.2011 2.7817 44 1 -0.8044 4.9327 6.1171 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411176942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:17 Heat of formation + Delta-G solvation = -32.282081 kcal Electronic energy + Delta-G solvation = -22510.768324 eV Core-core repulsion = 19427.583221 eV Total energy + Delta-G solvation = -3083.185103 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18585 -39.31676 -38.19435 -35.08532 -33.54547 -32.55910 -31.20875 -30.35761 -29.27270 -27.87782 -25.67659 -24.89371 -24.51541 -22.46705 -21.88946 -20.29991 -18.92428 -18.33508 -17.18475 -16.93233 -16.80113 -16.68516 -16.38976 -15.51239 -15.26682 -14.98192 -14.61789 -14.29502 -14.14976 -14.05808 -13.73744 -13.44504 -13.35611 -13.24175 -12.95008 -12.77839 -12.65084 -12.58382 -12.53473 -12.37606 -12.22013 -12.01147 -11.81774 -11.57514 -11.46800 -11.09100 -10.99724 -10.45682 -9.75638 -8.98888 -8.79278 -8.08465 -6.11959 0.43816 0.61895 1.38494 1.41906 1.49258 2.43841 2.47475 2.83505 3.23669 3.44896 3.86571 3.94335 4.07406 4.13882 4.25257 4.26970 4.32794 4.38859 4.40186 4.49463 4.53118 4.59803 4.64923 4.70744 4.76844 4.82565 4.94598 4.96191 5.00530 5.16309 5.18108 5.22572 5.24260 5.29464 5.50040 5.51903 5.59231 5.66873 5.73842 5.92370 6.00232 6.36689 6.49788 6.56912 6.67196 7.01330 7.52893 9.03493 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.006630 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.983161 B = 4222.465461 C = 5351.694579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.051 3.949 3 O -0.325 6.325 4 C 0.130 3.870 5 C -0.223 4.223 6 C -0.084 4.084 7 C -0.163 4.163 8 C -0.081 4.081 9 C -0.128 4.128 10 C 0.110 3.890 11 N -0.524 5.524 12 C 0.036 3.964 13 C 0.096 3.904 14 H 0.057 0.943 15 C -0.174 4.174 16 C 0.036 3.964 17 C -0.493 4.493 18 H 0.053 0.947 19 C -0.004 4.004 20 N -0.940 5.940 21 Si 0.951 3.049 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.000 1.000 43 H -0.009 1.009 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.461 -8.990 -13.859 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.238 6.238 4 C 0.084 3.916 5 C -0.242 4.242 6 C -0.102 4.102 7 C -0.181 4.181 8 C -0.100 4.100 9 C -0.129 4.129 10 C -0.017 4.017 11 N -0.247 5.247 12 C -0.112 4.112 13 C -0.012 4.012 14 H 0.076 0.924 15 C -0.232 4.232 16 C -0.001 4.001 17 C -0.532 4.532 18 H 0.072 0.928 19 C -0.200 4.200 20 N -0.583 5.583 21 Si 0.777 3.223 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.084 0.916 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.010 0.990 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.015 -9.245 -13.516 19.735 hybrid contribution -0.431 0.042 0.540 0.692 sum 10.584 -9.203 -12.976 19.107 Atomic orbital electron populations 1.21785 0.92670 1.03783 1.02514 1.22925 0.96230 0.81482 1.01729 1.86203 1.19339 1.30248 1.88057 1.19113 0.82708 0.94242 0.95535 1.21471 0.95038 0.98008 1.09656 1.21255 0.94006 0.98321 0.96619 1.21302 1.00794 0.92062 1.03982 1.21103 0.91109 1.00286 0.97475 1.19328 0.94531 0.92302 1.06771 1.20763 0.96547 0.94054 0.90383 1.61959 1.09710 1.44890 1.08124 1.22239 0.93317 0.98551 0.97066 1.21604 0.92723 0.89127 0.97783 0.92445 1.22388 1.01468 0.98394 1.00994 1.19076 0.94254 0.95264 0.91518 1.21421 1.32890 0.99175 0.99668 0.92845 1.25806 0.97729 0.99434 0.97040 1.70083 1.47314 1.32311 1.08572 0.85707 0.78919 0.80540 0.77105 1.20047 1.21140 1.19354 0.91634 0.87857 0.93975 0.90209 0.92332 0.84304 0.83273 0.83455 0.84476 0.93354 0.91695 0.94787 0.93638 0.91907 0.91543 0.92480 0.92809 0.98169 0.99042 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 10.28 71.98 0.74 -3.00 16 2 C 0.05 1.32 5.46 71.98 0.39 1.71 16 3 O -0.32 -11.16 9.37 -92.49 -0.87 -12.03 16 4 C 0.13 4.11 6.66 22.51 0.15 4.26 16 5 C -0.22 -5.64 9.04 22.37 0.20 -5.44 16 6 C -0.08 -1.77 10.04 22.25 0.22 -1.54 16 7 C -0.16 -3.44 10.04 22.28 0.22 -3.21 16 8 C -0.08 -2.03 8.70 22.25 0.19 -1.83 16 9 C -0.13 -3.97 4.60 -19.77 -0.09 -4.06 16 10 C 0.11 3.66 4.20 85.56 0.36 4.02 16 11 N -0.52 -21.15 4.46 -901.60 -4.02 -25.17 16 12 C 0.04 1.38 8.47 127.69 1.08 2.47 16 13 C 0.10 4.13 2.29 44.92 0.10 4.24 16 14 H 0.06 2.58 8.03 -2.39 -0.02 2.56 16 15 C -0.17 -6.04 8.50 71.98 0.61 -5.43 16 16 C 0.04 1.94 4.27 29.85 0.13 2.07 16 17 C -0.49 -29.10 8.84 25.60 0.23 -28.87 16 18 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 20 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 21 Si 0.95 46.84 29.54 68.60 2.03 48.86 16 22 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.08 1.60 7.66 -2.38 -0.02 1.58 16 29 H 0.06 1.47 7.66 -2.39 -0.02 1.46 16 30 H 0.14 2.92 6.30 -2.91 -0.02 2.90 16 31 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.14 2.90 8.04 -2.91 -0.02 2.88 16 34 H 0.05 1.42 6.80 -2.39 -0.02 1.40 16 35 H 0.06 2.29 7.71 -2.39 -0.02 2.27 16 36 H 0.03 1.12 6.51 -2.39 -0.02 1.11 16 37 H 0.04 2.04 6.03 -2.39 -0.01 2.03 16 38 H 0.06 2.23 6.63 -2.38 -0.02 2.22 16 39 H 0.07 1.96 6.75 -2.39 -0.02 1.94 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.05 1.85 6.47 -2.39 -0.02 1.83 16 42 H 0.00 0.01 6.10 -2.39 -0.01 -0.01 16 43 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.08 348.40 3.39 -66.69 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.96 Total: 14.82 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 5.01 Total: -34.43 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -3.73 Total: -83.91 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.87 Total: -12.03 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -70.08 3.39 -66.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411176942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.404 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds