Wall clock time and date at job start Thu Apr 9 2020 13:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39869 * 125.89925 * 2 1 4 4 C 1.35321 * 107.92291 * 179.86681 * 3 2 1 5 5 N 1.34951 * 107.74030 * 0.39949 * 4 3 2 6 6 C 1.46503 * 126.03392 * 179.75420 * 5 4 3 7 7 C 1.53109 * 109.52806 * 34.65179 * 6 5 4 8 8 C 1.53037 * 109.28421 * 182.44084 * 7 6 5 9 9 N 1.46852 * 109.51845 * 59.18093 * 8 7 6 10 10 C 1.46901 * 110.99825 * 174.16399 * 9 8 7 11 11 H 1.09000 * 109.47074 * 66.27556 * 10 9 8 12 12 C 1.52999 * 109.46914 * 186.27465 * 10 9 8 13 13 C 1.52997 * 109.46922 * 306.27958 * 10 9 8 14 14 C 1.50699 * 109.46906 * 302.83157 * 13 10 9 15 15 H 1.08001 * 120.00161 * 5.12438 * 14 13 10 16 16 C 1.37883 * 120.00010 * 185.13009 * 14 13 10 17 17 N 1.31514 * 119.99672 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99836 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47123 * 90.00286 * 18 16 14 20 20 H 1.48507 * 109.47113 * 209.99883 * 18 16 14 21 21 H 1.48500 * 109.47484 * 330.00000 * 18 16 14 22 22 C 1.46851 * 111.19459 * 298.25937 * 9 8 7 23 23 C 1.53038 * 109.52436 * 61.74497 * 22 9 8 24 24 N 1.30837 * 125.89566 * 180.31628 * 2 1 3 25 25 H 1.09006 * 109.47249 * 269.71161 * 1 2 3 26 26 H 1.09005 * 109.47353 * 29.70937 * 1 2 3 27 27 H 1.08995 * 109.47531 * 149.71051 * 1 2 3 28 28 H 1.08004 * 126.04029 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.13028 * 180.14826 * 4 3 2 30 30 H 1.09002 * 109.52181 * 154.84988 * 6 5 4 31 31 H 1.09002 * 109.50447 * 302.38906 * 7 6 5 32 32 H 1.09007 * 109.50448 * 62.49925 * 7 6 5 33 33 H 1.09000 * 109.46018 * 299.16790 * 8 7 6 34 34 H 1.08991 * 109.46526 * 179.19235 * 8 7 6 35 35 H 1.09003 * 109.46662 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.47230 * 299.99870 * 12 10 9 37 37 H 1.09000 * 109.47175 * 60.00153 * 12 10 9 38 38 H 1.08992 * 109.47624 * 62.83215 * 13 10 9 39 39 H 1.09000 * 109.46942 * 182.83739 * 13 10 9 40 40 H 0.97000 * 119.99458 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.46602 * 301.72621 * 22 9 8 42 42 H 1.09003 * 109.46063 * 181.76197 * 22 9 8 43 43 H 1.08996 * 109.49956 * 180.87412 * 23 22 9 44 44 H 1.08998 * 109.53241 * 60.78131 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0030 5 7 3.6087 -0.6341 -0.0041 6 6 4.7899 -1.5008 -0.0090 7 6 5.9050 -0.8508 0.8146 8 6 7.1555 -1.7309 0.7556 9 7 7.5811 -1.8857 -0.6414 10 6 8.8567 -2.6094 -0.7260 11 1 8.7155 -3.6354 -0.3864 12 6 9.3447 -2.6147 -2.1760 13 6 9.8951 -1.9175 0.1593 14 6 10.0393 -0.4790 -0.2661 15 1 9.3916 -0.0741 -1.0297 16 6 10.9983 0.3203 0.3193 17 7 11.7874 -0.1730 1.2487 18 14 11.1775 2.1031 -0.2085 19 1 10.3050 2.9592 0.6350 20 1 12.5916 2.5273 -0.0476 21 1 10.7784 2.2404 -1.6323 22 6 6.5447 -2.5507 -1.4415 23 6 5.2759 -1.6950 -1.4479 24 7 2.2741 -1.0599 -0.0059 25 1 -0.3634 -0.0052 1.0277 26 1 -0.3634 0.8926 -0.5093 27 1 -0.3634 -0.8873 -0.5183 28 1 1.9923 2.1598 -0.0004 29 1 4.4891 1.3485 0.0060 30 1 4.5335 -2.4683 0.4226 31 1 6.1330 0.1335 0.4057 32 1 5.5803 -0.7488 1.8502 33 1 6.9304 -2.7105 1.1774 34 1 7.9558 -1.2638 1.3293 35 1 10.2915 -3.1513 -2.2387 36 1 8.6048 -3.1077 -2.8067 37 1 9.4859 -1.5886 -2.5157 38 1 9.5711 -1.9581 1.1991 39 1 10.8548 -2.4243 0.0576 40 1 12.4618 0.3894 1.6608 41 1 6.3225 -3.5265 -1.0094 42 1 6.9014 -2.6790 -2.4635 43 1 4.5019 -2.1963 -2.0290 44 1 5.4934 -0.7240 -1.8928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411684804.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:30 Heat of formation + Delta-G solvation = 54.389601 kcal Electronic energy + Delta-G solvation = -22150.561190 eV Core-core repulsion = 19103.427204 eV Total energy + Delta-G solvation = -3047.133986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.22619 -40.19930 -36.90736 -34.74870 -33.37901 -32.11129 -31.37321 -30.69864 -28.85965 -28.20203 -25.74796 -24.54747 -23.75588 -22.41247 -20.88829 -20.67280 -20.33102 -18.44947 -18.15070 -16.75462 -16.51151 -16.04671 -15.82388 -15.37852 -15.24804 -14.88994 -14.72797 -14.56022 -14.17276 -14.11377 -13.66892 -13.64813 -13.41306 -12.94986 -12.91687 -12.76393 -12.71312 -12.63120 -12.30971 -12.20567 -12.19030 -12.02173 -11.72646 -11.52812 -11.44465 -10.99249 -10.88567 -10.42939 -10.14908 -9.44097 -9.00262 -8.06269 -6.09318 0.98487 1.43892 1.45316 1.53635 1.55283 1.89623 2.49914 3.02529 3.30178 3.41749 3.68976 3.90603 3.95418 3.96783 4.12599 4.25474 4.30679 4.36193 4.48839 4.49291 4.59838 4.62205 4.73099 4.77916 4.82031 4.86092 4.86130 4.96134 5.03479 5.07806 5.09441 5.15517 5.22560 5.27407 5.29546 5.49931 5.57176 5.71296 5.84714 5.92832 6.14762 6.28738 6.41141 6.55059 6.84230 7.06212 7.56730 9.06169 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020837 B = 0.004485 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.454987 B = 6240.919708 C = 7050.960028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.056 3.944 3 C -0.285 4.285 4 C 0.053 3.947 5 N -0.370 5.370 6 C 0.168 3.832 7 C -0.109 4.109 8 C 0.067 3.933 9 N -0.526 5.526 10 C 0.096 3.904 11 H 0.021 0.979 12 C -0.125 4.125 13 C 0.028 3.972 14 C -0.481 4.481 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.942 5.942 18 Si 0.950 3.050 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.057 3.943 23 C -0.110 4.110 24 N -0.338 5.338 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.166 0.834 29 H 0.186 0.814 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.053 0.947 38 H -0.006 1.006 39 H -0.007 1.007 40 H 0.256 0.744 41 H 0.035 0.965 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -0.577 -4.199 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 C -0.314 4.314 4 C -0.093 4.093 5 N -0.151 5.151 6 C 0.067 3.933 7 C -0.148 4.148 8 C -0.062 4.062 9 N -0.251 5.251 10 C -0.012 4.012 11 H 0.039 0.961 12 C -0.182 4.182 13 C -0.009 4.009 14 C -0.520 4.520 15 H 0.086 0.914 16 C -0.201 4.201 17 N -0.585 5.585 18 Si 0.777 3.223 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.190 1.190 22 C -0.071 4.071 23 C -0.148 4.148 24 N -0.161 5.161 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.184 0.816 29 H 0.203 0.797 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.477 -1.431 -4.309 19.026 hybrid contribution 0.758 0.932 0.567 1.328 sum -17.719 -0.499 -3.742 18.117 Atomic orbital electron populations 1.20264 0.84570 1.04076 1.03712 1.22975 0.98435 0.90685 0.98865 1.21700 0.91369 1.00627 1.17751 1.22948 1.00611 0.85276 1.00451 1.48900 1.04778 1.05073 1.56379 1.21343 0.80857 0.93313 0.97815 1.21833 0.92809 1.00330 0.99866 1.21905 0.96349 0.97700 0.90238 1.61814 1.02290 1.50908 1.10097 1.21524 0.89395 0.92971 0.97271 0.96089 1.21688 0.99920 1.01952 0.94680 1.19157 0.92570 0.95571 0.93587 1.21416 1.14962 0.95770 1.19808 0.91351 1.25815 0.96242 1.02284 0.95744 1.70099 1.22338 1.37422 1.28661 0.85669 0.76618 0.81080 0.78970 1.20401 1.21900 1.18994 1.22132 0.90694 0.94717 0.99587 1.21871 0.96734 1.01592 0.94641 1.77221 0.87325 1.24429 1.27157 0.89678 0.88549 0.91122 0.81613 0.79745 0.88863 0.90394 0.90542 0.95249 0.90931 0.93290 0.91708 0.92817 0.98793 0.98830 0.93511 0.94651 0.89105 0.90522 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.45 71.23 0.74 -0.31 16 2 C 0.06 1.36 7.22 43.10 0.31 1.67 16 3 C -0.29 -6.48 10.74 21.99 0.24 -6.25 16 4 C 0.05 1.32 10.59 83.54 0.88 2.20 16 5 N -0.37 -10.18 3.53 -327.12 -1.16 -11.34 16 6 C 0.17 4.43 3.27 45.07 0.15 4.57 16 7 C -0.11 -3.08 5.06 30.64 0.16 -2.93 16 8 C 0.07 2.25 5.03 86.32 0.43 2.68 16 9 N -0.53 -18.04 3.85 -871.10 -3.35 -21.39 16 10 C 0.10 3.70 2.34 44.91 0.11 3.80 16 11 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 12 C -0.12 -4.36 8.82 71.98 0.63 -3.72 16 13 C 0.03 1.40 4.19 29.85 0.13 1.52 16 14 C -0.48 -25.47 7.63 25.60 0.20 -25.28 16 15 H 0.07 3.57 6.86 -2.91 -0.02 3.55 16 16 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -56.28 13.29 21.45 0.28 -56.00 16 18 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 C 0.06 1.54 5.25 86.33 0.45 2.00 16 23 C -0.11 -2.78 5.70 30.65 0.17 -2.60 16 24 N -0.34 -9.87 12.58 -47.39 -0.60 -10.46 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.19 3.90 7.20 -2.91 -0.02 3.88 16 30 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.08 2.28 7.04 -2.39 -0.02 2.26 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 2.99 5.74 -2.39 -0.01 2.98 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.82 6.33 -2.39 -0.02 1.81 16 37 H 0.05 2.08 6.91 -2.39 -0.02 2.06 16 38 H -0.01 -0.32 6.37 -2.39 -0.02 -0.34 16 39 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 2.32 6.07 -2.39 -0.01 2.30 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -64.23 342.43 3.23 -61.00 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.96 Total: 14.70 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 5.06 Total: -22.47 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -4.82 Total: -99.18 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.23 3.23 -61.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411684804.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.389 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds