Wall clock time and date at job start Thu Apr 9 2020 13:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38604 * 120.40609 * 2 1 4 4 C 1.38599 * 118.56353 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.40365 * 179.97438 * 4 3 2 6 6 N 1.32279 * 119.19431 * 0.02562 * 4 3 2 7 7 C 1.32485 * 120.74400 * 359.97438 * 6 4 3 8 8 N 1.38403 * 119.22137 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99857 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.46877 * 269.72319 * 9 8 7 11 11 H 1.08005 * 119.99817 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00081 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99848 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46938 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47198 * 120.00527 * 14 12 10 17 17 H 1.48498 * 109.47360 * 240.00281 * 14 12 10 18 18 C 1.46499 * 120.00149 * 179.72500 * 8 7 6 19 19 C 1.53001 * 109.47147 * 270.27393 * 18 8 7 20 20 C 1.52997 * 109.47238 * 60.00030 * 19 18 8 21 21 C 1.53005 * 109.47315 * 179.97438 * 19 18 8 22 22 C 1.53004 * 109.47245 * 300.00012 * 19 18 8 23 23 N 1.32285 * 120.40122 * 180.30328 * 2 1 3 24 24 H 1.08999 * 109.47387 * 89.99669 * 1 2 3 25 25 H 1.08998 * 109.47408 * 209.99315 * 1 2 3 26 26 H 1.08999 * 109.46858 * 329.99467 * 1 2 3 27 27 H 1.08009 * 120.71555 * 0.05542 * 3 2 1 28 28 H 1.09002 * 109.46833 * 270.02342 * 5 4 3 29 29 H 1.09003 * 109.47090 * 30.01888 * 5 4 3 30 30 H 1.09000 * 109.47183 * 150.01796 * 5 4 3 31 31 H 1.09000 * 109.46803 * 29.71798 * 9 8 7 32 32 H 1.09000 * 109.47214 * 149.72592 * 9 8 7 33 33 H 0.96998 * 119.99944 * 179.97438 * 13 12 10 34 34 H 1.08994 * 109.47173 * 30.27941 * 18 8 7 35 35 H 1.09005 * 109.47077 * 150.28112 * 18 8 7 36 36 H 1.09004 * 109.47123 * 59.99584 * 20 19 18 37 37 H 1.08992 * 109.47586 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47443 * 300.00599 * 20 19 18 39 39 H 1.09003 * 109.46552 * 60.00048 * 21 19 18 40 40 H 1.08990 * 109.47182 * 180.02562 * 21 19 18 41 41 H 1.08996 * 109.46592 * 300.00455 * 21 19 18 42 42 H 1.09005 * 109.47053 * 60.00276 * 22 19 18 43 43 H 1.09001 * 109.46868 * 179.97438 * 22 19 18 44 44 H 1.08997 * 109.46984 * 300.00175 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1954 0.0000 4 6 3.5937 1.1508 -0.0005 5 6 4.3978 2.4254 -0.0011 6 7 4.2015 -0.0241 -0.0016 7 6 3.5013 -1.1488 -0.0015 8 7 4.1696 -2.3607 -0.0032 9 6 5.6344 -2.3895 -0.0043 10 6 6.1354 -2.4049 -1.4255 11 1 5.4329 -2.3939 -2.2459 12 6 7.4904 -2.4319 -1.6786 13 7 8.3458 -2.4448 -0.6796 14 14 8.1114 -2.4518 -3.4402 15 1 6.9558 -2.4333 -4.3727 16 1 8.9594 -1.2564 -3.6797 17 1 8.9129 -3.6809 -3.6688 18 6 3.4124 -3.6148 0.0029 19 6 3.1506 -4.0455 1.4475 20 6 2.3457 -2.9604 2.1654 21 6 2.3592 -5.3550 1.4539 22 6 4.4846 -4.2517 2.1680 23 7 2.1764 -1.1409 -0.0060 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5139 27 1 1.6868 2.1412 0.0009 28 1 4.5909 2.7327 -1.0290 29 1 3.8393 3.2076 0.5130 30 1 5.3447 2.2579 0.5121 31 1 6.0155 -1.5047 0.5057 32 1 5.9807 -3.2844 0.5127 33 1 9.2991 -2.4642 -0.8577 34 1 2.4622 -3.4680 -0.5104 35 1 3.9859 -4.3880 -0.5084 36 1 1.3954 -2.8134 1.6521 37 1 2.1588 -3.2673 3.1943 38 1 2.9090 -2.0272 2.1608 39 1 2.9323 -6.1283 0.9424 40 1 2.1723 -5.6616 2.4830 41 1 1.4090 -5.2076 0.9407 42 1 5.0480 -3.3186 2.1635 43 1 4.2980 -4.5581 3.1973 44 1 5.0580 -5.0248 1.6566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517391669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:55 Heat of formation + Delta-G solvation = 41.323600 kcal Electronic energy + Delta-G solvation = -22817.853019 eV Core-core repulsion = 19770.152449 eV Total energy + Delta-G solvation = -3047.700570 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40654 -37.88055 -34.75578 -34.07897 -32.74286 -31.24739 -29.00601 -27.54577 -27.05472 -26.85447 -26.62262 -25.29222 -23.12539 -21.04147 -20.48681 -18.41841 -16.92833 -16.54497 -16.12988 -15.02691 -14.82822 -14.63389 -14.19151 -14.05834 -13.70112 -13.24140 -13.15900 -12.97051 -12.54276 -12.49190 -12.32221 -12.20801 -11.91760 -11.81938 -11.72091 -11.29054 -11.19990 -11.06066 -10.89924 -10.75544 -10.54825 -10.26116 -10.20611 -10.04007 -10.01884 -9.66985 -9.57391 -8.99798 -8.42577 -8.23088 -6.91833 -5.99227 -4.04587 1.84355 1.90621 3.29976 3.37524 3.41906 3.66515 4.44713 4.56601 4.67629 4.91066 5.19044 5.24029 5.27098 5.33033 5.43291 5.61790 5.66017 5.69773 5.74632 5.86963 5.90426 5.91321 5.94153 5.98033 6.06241 6.16365 6.22126 6.23595 6.31624 6.35100 6.37949 6.43804 6.56098 6.60547 6.80202 6.82680 6.96870 7.20584 7.49793 7.74572 7.89621 8.01043 8.29344 8.46912 8.95689 9.20650 9.59576 11.06334 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.007681 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.135955 B = 3644.517777 C = 5163.724179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.207 3.793 3 C -0.320 4.320 4 C 0.214 3.786 5 C -0.102 4.102 6 N -0.551 5.551 7 C 0.580 3.420 8 N -0.556 5.556 9 C 0.254 3.746 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.895 5.895 14 Si 0.894 3.106 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.144 3.856 19 C -0.085 4.085 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.141 4.141 23 N -0.581 5.581 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.398 2.890 4.357 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.058 3.942 3 C -0.348 4.348 4 C 0.064 3.936 5 C -0.159 4.159 6 N -0.274 5.274 7 C 0.225 3.775 8 N -0.267 5.267 9 C 0.134 3.866 10 C -0.559 4.559 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.534 5.534 14 Si 0.722 3.278 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.019 3.981 19 C -0.086 4.086 20 C -0.180 4.180 21 C -0.192 4.192 22 C -0.198 4.198 23 N -0.306 5.306 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.540 1.752 4.380 13.398 hybrid contribution 0.122 0.835 -1.056 1.352 sum -12.418 2.587 3.325 13.113 Atomic orbital electron populations 1.20656 0.89170 1.02985 1.02788 1.21181 0.96268 0.87990 0.88730 1.21884 0.95478 0.99338 1.18064 1.21341 0.91045 0.93383 0.87837 1.20696 1.00119 0.92049 1.03079 1.67936 1.40258 0.97224 1.22007 1.19276 0.84251 0.86951 0.86977 1.46800 1.07867 0.99879 1.72113 1.19467 0.71074 0.98727 0.97308 1.21497 0.91593 1.50318 0.92449 0.92757 1.24876 0.96631 0.95306 0.97096 1.69940 1.02119 1.50920 1.30459 0.86511 0.78746 0.77542 0.85019 1.19986 1.20967 1.21013 1.21369 0.96498 0.85507 0.94718 1.20984 0.95728 0.95215 0.96679 1.21752 1.00061 0.97981 0.98202 1.21770 0.99655 0.96583 1.01211 1.21967 0.96519 1.02603 0.98744 1.67813 1.08094 1.30037 1.24689 0.90527 0.90684 0.90921 0.85491 0.90285 0.90997 0.90214 0.93484 0.94211 0.92894 0.90724 0.90621 0.92080 0.94418 0.93444 0.92743 0.93033 0.92839 0.91601 0.93852 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.22 36.00 0.37 -0.75 16 2 C 0.21 3.36 6.82 -82.26 -0.56 2.80 16 3 C -0.32 -5.05 9.53 -39.31 -0.37 -5.43 16 4 C 0.21 3.91 6.82 -82.27 -0.56 3.35 16 5 C -0.10 -1.46 10.22 36.01 0.37 -1.09 16 6 N -0.55 -12.37 9.05 -10.16 -0.09 -12.46 16 7 C 0.58 12.70 6.57 -322.82 -2.12 10.58 16 8 N -0.56 -12.37 2.06 -177.40 -0.37 -12.73 16 9 C 0.25 6.54 4.07 -5.19 -0.02 6.52 16 10 C -0.52 -14.69 9.39 -34.44 -0.32 -15.01 16 11 H 0.05 1.59 7.81 -52.48 -0.41 1.18 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.14 2.70 4.60 -4.04 -0.02 2.68 16 19 C -0.08 -1.36 0.84 -154.50 -0.13 -1.49 16 20 C -0.12 -1.98 7.08 37.16 0.26 -1.71 16 21 C -0.13 -1.76 8.47 37.16 0.31 -1.45 16 22 C -0.14 -2.40 7.23 37.16 0.27 -2.13 16 23 N -0.58 -11.06 6.99 -10.16 -0.07 -11.13 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.34 7.32 -51.93 -0.38 0.96 16 32 H 0.04 1.05 6.05 -51.93 -0.31 0.73 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.07 1.38 7.33 -51.93 -0.38 1.00 16 35 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 36 H 0.06 0.97 7.53 -51.93 -0.39 0.57 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.90 6.12 -51.93 -0.32 0.58 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.30 5.99 -51.93 -0.31 0.99 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -31.19 349.70 -9.72 -40.90 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.55 Total: 0.18 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.63 Total: -1.46 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.21 Total: -61.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.19 -9.72 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517391669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.227 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds