Wall clock time and date at job start Thu Apr 9 2020 13:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47197 * 2 1 4 4 C 1.36939 * 120.00206 * 273.78958 * 3 2 1 5 5 H 1.08005 * 119.99756 * 42.76226 * 4 3 2 6 6 C 1.38808 * 120.00257 * 222.75265 * 4 3 2 7 7 N 1.31625 * 120.00106 * 17.38028 * 6 4 3 8 8 Si 1.86798 * 120.00216 * 197.37898 * 6 4 3 9 9 H 1.48500 * 109.47269 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47306 * 119.99970 * 8 6 4 11 11 H 1.48499 * 109.46991 * 240.00132 * 8 6 4 12 12 C 1.46504 * 119.99636 * 93.79608 * 3 2 1 13 13 C 1.50698 * 109.46884 * 269.99522 * 12 3 2 14 14 C 1.38291 * 119.97599 * 270.29739 * 13 12 3 15 15 C 1.38244 * 120.11166 * 180.25333 * 14 13 12 16 16 C 1.38168 * 120.05589 * 359.45212 * 15 14 13 17 17 C 1.38718 * 119.94055 * 0.27488 * 16 15 14 18 18 O 1.35900 * 120.05342 * 179.97438 * 17 16 15 19 19 C 1.42911 * 116.99830 * 354.74764 * 18 17 16 20 20 C 1.52999 * 109.46615 * 62.91396 * 19 18 17 21 21 C 1.53000 * 109.46854 * 182.90855 * 19 18 17 22 22 C 1.52996 * 109.47271 * 302.91503 * 19 18 17 23 23 C 1.38129 * 119.96761 * 90.00309 * 13 12 3 24 24 H 1.09000 * 109.46736 * 300.00133 * 1 2 3 25 25 H 1.09007 * 109.46842 * 59.99743 * 1 2 3 26 26 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47129 * 239.99927 * 2 1 3 28 28 H 1.09000 * 109.47284 * 120.00730 * 2 1 3 29 29 H 0.97001 * 120.00384 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.47013 * 149.99809 * 12 3 2 31 31 H 1.08998 * 109.47423 * 30.00053 * 12 3 2 32 32 H 1.07995 * 119.94070 * 0.02562 * 14 13 12 33 33 H 1.07997 * 119.96914 * 179.72662 * 15 14 13 34 34 H 1.07994 * 120.02797 * 180.25226 * 16 15 14 35 35 H 1.08997 * 109.47734 * 84.81955 * 20 19 18 36 36 H 1.09002 * 109.47123 * 204.81923 * 20 19 18 37 37 H 1.09006 * 109.47380 * 324.81987 * 20 19 18 38 38 H 1.08996 * 109.47195 * 60.00441 * 21 19 18 39 39 H 1.09002 * 109.46770 * 180.02562 * 21 19 18 40 40 H 1.08999 * 109.47468 * 300.00264 * 21 19 18 41 41 H 1.08992 * 109.47541 * 50.65869 * 22 19 18 42 42 H 1.08998 * 109.46892 * 170.66364 * 22 19 18 43 43 H 1.09004 * 109.46968 * 290.65828 * 22 19 18 44 44 H 1.07994 * 120.02816 * 0.04085 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1727 2.0529 -1.1833 5 1 1.4165 1.9758 -1.9506 6 6 3.3009 2.8329 -1.3966 7 7 4.3661 2.6702 -0.6407 8 14 3.3076 4.1135 -2.7565 9 1 1.9985 4.0982 -3.4574 10 1 3.5397 5.4577 -2.1696 11 1 4.3902 3.8022 -3.7242 12 6 2.3417 2.0437 1.2660 13 6 1.1160 2.7435 1.7941 14 6 0.8593 4.0538 1.4337 15 6 -0.2616 4.7001 1.9206 16 6 -1.1343 4.0346 2.7599 17 6 -0.8820 2.7185 3.1184 18 8 -1.7386 2.0618 3.9441 19 6 -2.8156 2.8206 4.4980 20 6 -3.7223 3.3172 3.3701 21 6 -3.6240 1.9379 5.4510 22 6 -2.2535 4.0188 5.2655 23 6 0.2466 2.0737 2.6328 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 5.1544 3.2155 -0.7894 30 1 3.1345 2.7737 1.1020 31 1 2.6761 1.3007 1.9900 32 1 1.5375 4.5740 0.7737 33 1 -0.4574 5.7248 1.6412 34 1 -2.0119 4.5387 3.1367 35 1 -4.4443 2.5412 3.1158 36 1 -4.2512 4.2126 3.6966 37 1 -3.1174 3.5516 2.4941 38 1 -2.9781 1.5841 6.2545 39 1 -4.4457 2.5166 5.8731 40 1 -4.0245 1.0843 4.9041 41 1 -1.5461 4.5557 4.6337 42 1 -3.0689 4.6856 5.5458 43 1 -1.7453 3.6688 6.1640 44 1 0.4453 1.0493 2.9107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876631648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:56:29 Heat of formation + Delta-G solvation = -0.821660 kcal Electronic energy + Delta-G solvation = -22525.657779 eV Core-core repulsion = 19443.836902 eV Total energy + Delta-G solvation = -3081.820877 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66908 -39.20420 -37.27869 -35.02556 -33.84966 -32.71905 -30.92150 -30.36467 -28.43724 -28.32024 -27.13482 -25.24025 -23.42799 -22.96475 -22.14713 -20.65947 -18.64724 -17.94005 -17.49219 -16.93079 -16.53379 -16.21139 -15.71314 -15.54124 -15.31149 -14.82833 -14.72986 -14.48988 -14.14554 -14.08182 -13.55830 -13.29358 -13.19985 -13.06722 -12.88692 -12.80141 -12.73250 -12.60492 -12.51727 -12.41729 -12.28979 -12.04531 -11.77939 -11.61218 -11.51405 -11.39429 -11.27169 -10.54339 -9.54383 -8.91423 -8.49946 -7.81957 -5.52726 0.54087 0.66400 1.43089 1.46426 1.56587 2.33083 2.49237 2.93163 3.26611 3.78474 3.85573 3.88408 4.00785 4.03454 4.11527 4.31969 4.43556 4.47300 4.57340 4.62247 4.67283 4.74246 4.76617 4.79903 4.82187 4.88003 4.90665 4.93299 5.07045 5.08608 5.16619 5.23415 5.27953 5.29612 5.33317 5.49415 5.55017 5.57429 5.65756 5.72770 6.00970 6.03659 6.51060 6.67055 7.17861 7.82441 8.40885 9.13122 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.004991 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.615676 B = 5608.741579 C = 6106.760816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.045 0.955 6 C -0.023 4.023 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.288 1.288 12 C 0.185 3.815 13 C -0.047 4.047 14 C -0.159 4.159 15 C -0.089 4.089 16 C -0.224 4.224 17 C 0.127 3.873 18 O -0.326 6.326 19 C 0.097 3.903 20 C -0.196 4.196 21 C -0.134 4.134 22 C -0.199 4.199 23 C -0.161 4.161 24 H 0.048 0.952 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.253 0.747 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.791 2.881 11.804 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.310 5.310 4 C -0.394 4.394 5 H 0.062 0.938 6 C -0.221 4.221 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.215 1.215 12 C 0.059 3.941 13 C -0.050 4.050 14 C -0.178 4.178 15 C -0.107 4.107 16 C -0.242 4.242 17 C 0.082 3.918 18 O -0.241 6.241 19 C 0.060 3.940 20 C -0.253 4.253 21 C -0.191 4.191 22 C -0.256 4.256 23 C -0.181 4.181 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.613 2.706 11.849 19.786 hybrid contribution 0.545 0.670 -0.983 1.308 sum -15.068 3.376 10.866 18.882 Atomic orbital electron populations 1.22216 0.98035 1.00532 1.00658 1.20963 0.93165 0.85717 0.98729 1.43815 1.76703 1.09128 1.01368 1.19065 1.00391 1.25399 0.94524 0.93758 1.25911 0.94041 1.02448 0.99707 1.70104 1.02849 1.40448 1.42425 0.85476 0.77646 0.79459 0.79495 1.19534 1.21011 1.21465 1.19767 0.92536 0.95698 0.86076 1.20754 0.97703 0.93869 0.92676 1.20951 0.99454 0.95369 1.02016 1.21176 0.93240 1.00291 0.95985 1.21875 1.03474 0.94530 1.04355 1.18857 0.89869 0.91702 0.91357 1.86116 1.38613 1.39865 1.59516 1.22105 0.85465 0.92631 0.93842 1.22857 1.00278 1.03241 0.98901 1.21842 0.99590 0.99711 0.97959 1.22903 1.03355 0.98207 1.01101 1.20212 0.94749 1.00295 1.02823 0.93322 0.95055 0.91733 0.94651 0.93798 0.93723 0.91528 0.94735 0.88499 0.84037 0.81426 0.91400 0.88687 0.91613 0.91902 0.87994 0.91934 0.90784 0.88553 0.91991 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.03 10.22 71.98 0.74 -5.29 16 2 C 0.14 6.19 6.43 86.38 0.56 6.75 16 3 N -0.59 -30.23 2.37 -706.33 -1.68 -31.91 16 4 C -0.26 -14.67 9.43 84.03 0.79 -13.88 16 5 H 0.04 2.53 7.89 -2.91 -0.02 2.51 16 6 C -0.02 -1.28 5.01 84.86 0.43 -0.85 16 7 N -0.92 -53.36 11.60 21.65 0.25 -53.11 16 8 Si 0.95 44.60 29.59 68.60 2.03 46.63 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 C 0.19 9.07 5.45 85.63 0.47 9.53 16 13 C -0.05 -2.03 5.42 -19.88 -0.11 -2.14 16 14 C -0.16 -6.53 9.70 22.28 0.22 -6.32 16 15 C -0.09 -2.92 10.04 22.25 0.22 -2.69 16 16 C -0.22 -6.64 5.74 22.37 0.13 -6.51 16 17 C 0.13 4.25 6.02 22.51 0.14 4.38 16 18 O -0.33 -9.72 9.79 -92.42 -0.90 -10.63 16 19 C 0.10 2.00 1.11 -10.80 -0.01 1.98 16 20 C -0.20 -3.62 8.06 71.98 0.58 -3.04 16 21 C -0.13 -2.12 8.70 71.98 0.63 -1.49 16 22 C -0.20 -3.59 8.05 71.98 0.58 -3.02 16 23 C -0.16 -6.22 7.68 22.37 0.17 -6.05 16 24 H 0.05 1.92 5.84 -2.39 -0.01 1.90 16 25 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 27 H 0.04 1.60 8.07 -2.38 -0.02 1.59 16 28 H 0.04 1.82 7.85 -2.39 -0.02 1.80 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.07 3.68 5.70 -2.38 -0.01 3.67 16 31 H 0.03 1.62 7.81 -2.39 -0.02 1.61 16 32 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.17 3.86 3.66 -2.91 -0.01 3.85 16 35 H 0.07 1.19 7.89 -2.39 -0.02 1.17 16 36 H 0.09 1.22 7.75 -2.39 -0.02 1.20 16 37 H 0.07 1.51 4.94 -2.38 -0.01 1.50 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 41 H 0.07 1.57 4.51 -2.39 -0.01 1.56 16 42 H 0.10 1.17 7.90 -2.39 -0.02 1.15 16 43 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 44 H 0.12 4.39 7.94 -2.91 -0.02 4.36 16 Total: -1.00 -63.73 342.72 6.18 -57.54 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.97 Total: 20.09 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 5.52 Total: -28.62 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -1.43 Total: -85.02 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.90 Total: -10.63 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.73 6.18 -57.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876631648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.722 kcal (2) G-P(sol) polarization free energy of solvation -63.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds