Wall clock time and date at job start Thu Apr 9 2020 13:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46896 * 109.47493 * 259.95009 * 6 5 4 8 8 C 1.46852 * 110.99969 * 66.04548 * 7 6 5 9 9 C 1.53030 * 109.52543 * 185.83899 * 8 7 6 10 10 C 1.53119 * 109.27958 * 300.82384 * 9 8 7 11 11 C 1.53122 * 109.16092 * 57.65305 * 10 9 8 12 12 H 1.08995 * 109.50004 * 62.29186 * 11 10 9 13 13 C 1.50704 * 109.50026 * 182.36804 * 11 10 9 14 14 H 1.07997 * 120.00072 * 120.00453 * 13 11 10 15 15 C 1.37877 * 119.99876 * 299.99656 * 13 11 10 16 16 N 1.31515 * 120.00267 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 120.00008 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47319 * 90.00073 * 17 15 13 19 19 H 1.48498 * 109.47411 * 209.99899 * 17 15 13 20 20 H 1.48503 * 109.47062 * 329.99883 * 17 15 13 21 21 C 1.46849 * 111.00286 * 190.25660 * 7 6 5 22 22 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 23 23 C 1.50696 * 125.90209 * 180.26118 * 22 5 4 24 24 N 1.30844 * 108.19764 * 359.97438 * 22 5 4 25 25 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 27 27 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 28 28 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 30 30 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.46985 * 19.95523 * 6 5 4 32 32 H 1.09001 * 109.46900 * 139.94874 * 6 5 4 33 33 H 1.09001 * 109.46481 * 305.86173 * 8 7 6 34 34 H 1.09000 * 109.45893 * 65.82723 * 8 7 6 35 35 H 1.09004 * 109.50258 * 60.76178 * 9 8 7 36 36 H 1.08999 * 109.50425 * 180.87790 * 9 8 7 37 37 H 1.09007 * 109.52375 * 177.56161 * 10 9 8 38 38 H 1.08998 * 109.52428 * 297.68378 * 10 9 8 39 39 H 0.96995 * 120.00428 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46216 * 294.17606 * 21 7 6 41 41 H 1.08992 * 109.45937 * 54.14556 * 21 7 6 42 42 H 1.09005 * 109.46832 * 269.71640 * 23 22 5 43 43 H 1.09004 * 109.46837 * 29.71446 * 23 22 5 44 44 H 1.08992 * 109.47200 * 149.71544 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1305 5.0634 2.1204 8 6 2.5110 4.2925 3.2059 9 6 1.5480 5.1903 3.9859 10 6 2.3195 6.3830 4.5576 11 6 2.9948 7.1409 3.4112 12 1 2.2341 7.5311 2.7351 13 6 3.8040 8.2825 3.9707 14 1 4.8690 8.3256 3.7968 15 6 3.1847 9.2720 4.7043 16 7 1.8878 9.2194 4.9163 17 14 4.1876 10.6874 5.3972 18 1 4.2319 11.7938 4.4077 19 1 3.5593 11.1713 6.6527 20 1 5.5688 10.2225 5.6821 21 6 3.9159 6.1865 2.6479 22 6 2.3129 3.4723 -0.6000 23 6 2.2408 4.7865 -1.3339 24 7 1.6811 2.3745 -0.9282 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3184 1.4127 1.7364 31 1 4.6757 3.6603 1.8811 32 1 4.4869 4.8109 0.5362 33 1 1.9621 3.4498 2.7856 34 1 3.2863 3.9224 3.8768 35 1 0.7645 5.5498 3.3187 36 1 1.1001 4.6220 4.8011 37 1 1.6296 7.0478 5.0774 38 1 3.0769 6.0261 5.2555 39 1 1.4521 9.9153 5.4328 40 1 4.6846 5.8075 3.3214 41 1 4.3873 6.7195 1.8223 42 1 1.4281 5.3868 -0.9250 43 1 3.1831 5.3213 -1.2148 44 1 2.0591 4.6019 -2.3926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895313510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:55:45 Heat of formation + Delta-G solvation = 64.718048 kcal Electronic energy + Delta-G solvation = -22044.695263 eV Core-core repulsion = 18998.009153 eV Total energy + Delta-G solvation = -3046.686111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15668 -38.01288 -34.99284 -33.67843 -31.88825 -31.34235 -30.04368 -29.37656 -27.56178 -25.43535 -24.84059 -22.92272 -21.83341 -21.26375 -20.50566 -19.02879 -18.47455 -16.72915 -16.29271 -15.54270 -14.98557 -14.52084 -14.38376 -14.19735 -13.93108 -13.52935 -13.25998 -12.99271 -12.84673 -12.47527 -12.36190 -12.24857 -12.08745 -11.91382 -11.83008 -11.61811 -11.43570 -11.07428 -10.91473 -10.62453 -10.58228 -10.27211 -10.03941 -9.76781 -9.40003 -9.02885 -8.99075 -8.63435 -8.25148 -8.17999 -7.49586 -5.92203 -3.98241 2.00136 2.55773 2.94115 3.34017 3.40693 3.43557 4.35987 4.46859 4.74979 4.78315 4.87440 4.94643 5.05494 5.29632 5.37718 5.42240 5.46445 5.57031 5.71194 5.82369 5.88995 5.90994 5.93386 6.07118 6.14963 6.20428 6.24151 6.32525 6.37262 6.50553 6.60142 6.81490 6.83380 6.90436 7.05451 7.13563 7.30267 7.48579 7.78984 7.82878 7.89825 7.95783 8.16003 8.24672 8.54780 9.06210 9.65767 11.13620 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.003829 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.446463 B = 7310.044574 C = 7602.698329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 N -0.379 5.379 4 C 0.051 3.949 5 C -0.213 4.213 6 C 0.131 3.869 7 N -0.531 5.531 8 C 0.068 3.932 9 C -0.116 4.116 10 C -0.109 4.109 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.513 4.513 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.068 3.932 22 C 0.097 3.903 23 C -0.068 4.068 24 N -0.304 5.304 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.028 0.972 39 H 0.259 0.741 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -17.039 -8.319 18.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 N -0.162 5.162 4 C -0.095 4.095 5 C -0.225 4.225 6 C 0.002 3.998 7 N -0.256 5.256 8 C -0.060 4.060 9 C -0.154 4.154 10 C -0.148 4.148 11 C 0.037 3.963 12 H 0.052 0.948 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.059 4.059 22 C -0.070 4.070 23 C -0.126 4.126 24 N -0.127 5.127 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.183 0.817 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.225 -17.460 -9.324 19.831 hybrid contribution 1.699 0.611 1.700 2.480 sum 0.474 -16.849 -7.624 18.500 Atomic orbital electron populations 1.22049 0.93963 1.02499 1.03761 1.21572 0.95983 0.77863 1.03212 1.48445 1.36163 1.09862 1.21699 1.22274 0.96205 0.94907 0.96136 1.19918 1.08016 0.94185 1.00348 1.20260 0.92022 0.92417 0.95065 1.61970 1.33363 1.09654 1.20591 1.21957 0.96732 0.95715 0.91635 1.21660 0.98190 0.97695 0.97873 1.21641 0.99107 0.94720 0.99290 1.18649 0.93897 0.91237 0.92548 0.94776 1.21166 0.94311 1.06760 1.32971 0.92879 1.24932 0.94835 0.97838 0.96255 1.69894 1.08606 1.33810 1.40421 0.86646 0.80308 0.82825 0.78490 1.20733 1.21355 1.20055 1.22298 0.95250 0.91027 0.97279 1.22206 0.94736 0.94794 0.95247 1.20128 1.03789 0.90475 0.98242 1.77220 1.24386 0.96877 1.14192 0.91016 0.91994 0.91117 0.90258 0.89045 0.81705 0.95372 0.90563 0.92613 0.96401 0.92279 0.93934 0.89254 0.95311 0.93133 0.96510 0.92287 0.90022 0.90395 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.10 37.16 0.38 -1.00 16 2 C 0.14 1.15 7.23 -4.04 -0.03 1.12 16 3 N -0.38 -4.84 3.68 -61.37 -0.23 -5.07 16 4 C 0.05 0.65 10.51 -17.22 -0.18 0.47 16 5 C -0.21 -3.16 4.71 -105.05 -0.49 -3.65 16 6 C 0.13 2.04 5.17 -4.98 -0.03 2.01 16 7 N -0.53 -9.89 4.65 -236.12 -1.10 -10.98 16 8 C 0.07 1.23 5.31 -3.83 -0.02 1.21 16 9 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 10 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 11 C 0.06 1.39 2.26 -91.69 -0.21 1.19 16 12 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.51 -14.09 8.57 -34.44 -0.29 -14.39 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.51 11.35 55.43 0.63 -24.88 16 17 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 22 C 0.10 1.48 7.22 -82.40 -0.59 0.88 16 23 C -0.07 -0.90 10.26 36.00 0.37 -0.54 16 24 N -0.30 -4.65 12.42 33.67 0.42 -4.23 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.08 1.14 7.43 -51.93 -0.39 0.75 16 33 H 0.06 0.95 6.46 -51.93 -0.34 0.61 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 2.40 6.15 -51.92 -0.32 2.08 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.22 8.01 -51.93 -0.42 0.81 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.08 0.99 7.50 -51.93 -0.39 0.60 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 348.93 15.07 5.26 5.26 Total: -1.00 -30.61 348.93 -9.27 -39.89 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.72 Total: -1.39 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.51 Total: -14.90 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.28 Total: -45.16 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.61 -9.27 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895313510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.604 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds